Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003190

Experiment: dpurH coculture with Glucose and NaCl and NH4Cl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_003185 and TX73_003190 are separated by 21 nucleotidesTX73_003190 and TX73_003195 are separated by 95 nucleotidesTX73_003195 and TX73_003200 are separated by 19 nucleotides TX73_003185: TX73_003185 - DNA polymerase III subunit gamma/tau, at 682,650 to 684,521 _003185 TX73_003190: TX73_003190 - YbaB/EbfC family nucleoid-associated protein, at 684,543 to 684,863 _003190 TX73_003195: TX73_003195 - recombination mediator RecR, at 684,959 to 685,561 _003195 TX73_003200: TX73_003200 - hypothetical protein, at 685,581 to 686,009 _003200 Position (kb) 684 685Strain fitness (log2 ratio) -2 -1 0 1 2at 684.439 kb on + strandat 684.441 kb on + strandat 684.449 kb on - strandat 684.454 kb on + strandat 684.454 kb on + strandat 684.462 kb on - strandat 684.462 kb on - strandat 684.480 kb on + strandat 684.483 kb on - strandat 684.488 kb on - strandat 684.488 kb on - strandat 684.493 kb on + strandat 684.566 kb on + strandat 684.567 kb on + strandat 684.584 kb on - strand, within TX73_003190at 684.593 kb on + strand, within TX73_003190at 684.593 kb on + strand, within TX73_003190at 684.595 kb on - strand, within TX73_003190at 684.598 kb on + strand, within TX73_003190at 684.598 kb on + strand, within TX73_003190at 684.601 kb on - strand, within TX73_003190at 684.606 kb on - strand, within TX73_003190at 684.608 kb on + strand, within TX73_003190at 684.613 kb on + strand, within TX73_003190at 684.623 kb on + strand, within TX73_003190at 684.623 kb on + strand, within TX73_003190at 684.627 kb on - strand, within TX73_003190at 684.631 kb on - strand, within TX73_003190at 684.631 kb on - strand, within TX73_003190at 684.646 kb on + strand, within TX73_003190at 684.663 kb on + strand, within TX73_003190at 684.663 kb on + strand, within TX73_003190at 684.663 kb on + strand, within TX73_003190at 684.669 kb on - strand, within TX73_003190at 684.671 kb on - strand, within TX73_003190at 684.679 kb on + strand, within TX73_003190at 684.679 kb on + strand, within TX73_003190at 684.687 kb on - strand, within TX73_003190at 684.687 kb on - strand, within TX73_003190at 684.703 kb on - strand, within TX73_003190at 684.716 kb on + strand, within TX73_003190at 684.721 kb on + strand, within TX73_003190at 684.724 kb on - strand, within TX73_003190at 684.729 kb on - strand, within TX73_003190at 684.731 kb on + strand, within TX73_003190at 684.731 kb on - strand, within TX73_003190at 684.747 kb on + strand, within TX73_003190at 684.777 kb on - strand, within TX73_003190at 684.793 kb on - strand, within TX73_003190at 684.793 kb on - strand, within TX73_003190at 684.798 kb on + strand, within TX73_003190at 684.816 kb on + strand, within TX73_003190at 684.818 kb on - strand, within TX73_003190at 684.829 kb on + strand, within TX73_003190at 684.829 kb on + strand, within TX73_003190at 684.847 kb on + strandat 684.855 kb on - strandat 684.858 kb on + strandat 684.860 kb on - strandat 684.861 kb on - strandat 684.861 kb on - strandat 684.863 kb on + strandat 684.865 kb on - strandat 684.865 kb on - strandat 684.865 kb on - strandat 684.885 kb on + strandat 684.893 kb on - strandat 684.893 kb on - strandat 684.918 kb on - strandat 684.923 kb on + strandat 684.934 kb on + strandat 684.934 kb on + strandat 684.947 kb on - strandat 684.947 kb on - strandat 684.952 kb on - strandat 684.955 kb on + strandat 684.955 kb on + strandat 685.054 kb on + strand, within TX73_003195at 685.095 kb on + strand, within TX73_003195at 685.132 kb on + strand, within TX73_003195at 685.209 kb on + strand, within TX73_003195at 685.370 kb on - strand, within TX73_003195at 685.417 kb on - strand, within TX73_003195at 685.422 kb on + strand, within TX73_003195at 685.555 kb on + strandat 685.555 kb on + strandat 685.555 kb on + strandat 685.555 kb on + strandat 685.555 kb on + strandat 685.555 kb on + strandat 685.563 kb on - strandat 685.563 kb on - strandat 685.563 kb on - strandat 685.568 kb on - strandat 685.569 kb on + strandat 685.601 kb on - strandat 685.639 kb on + strand, within TX73_003200at 685.647 kb on - strand, within TX73_003200at 685.647 kb on - strand, within TX73_003200at 685.655 kb on - strand, within TX73_003200at 685.678 kb on - strand, within TX73_003200at 685.691 kb on + strand, within TX73_003200at 685.701 kb on + strand, within TX73_003200at 685.765 kb on - strand, within TX73_003200at 685.772 kb on + strand, within TX73_003200at 685.779 kb on + strand, within TX73_003200at 685.780 kb on - strand, within TX73_003200at 685.819 kb on + strand, within TX73_003200at 685.829 kb on + strand, within TX73_003200at 685.836 kb on + strand, within TX73_003200at 685.837 kb on - strand, within TX73_003200at 685.843 kb on - strand, within TX73_003200

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Per-strain Table

Position Strand Gene LocusTag Fraction dpurH coculture with Glucose and NaCl and NH4Cl
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684,439 + +0.3
684,441 + -1.4
684,449 - -0.5
684,454 + +0.0
684,454 + +0.4
684,462 - -0.6
684,462 - +0.4
684,480 + -0.2
684,483 - +0.4
684,488 - -0.4
684,488 - -0.4
684,493 + -0.7
684,566 + +0.4
684,567 + +0.2
684,584 - TX73_003190 0.13 -1.4
684,593 + TX73_003190 0.16 -0.4
684,593 + TX73_003190 0.16 -0.2
684,595 - TX73_003190 0.16 +0.4
684,598 + TX73_003190 0.17 +0.0
684,598 + TX73_003190 0.17 -0.9
684,601 - TX73_003190 0.18 +0.7
684,606 - TX73_003190 0.20 -0.3
684,608 + TX73_003190 0.20 +1.3
684,613 + TX73_003190 0.22 +0.9
684,623 + TX73_003190 0.25 +0.3
684,623 + TX73_003190 0.25 -0.3
684,627 - TX73_003190 0.26 +0.3
684,631 - TX73_003190 0.27 +0.2
684,631 - TX73_003190 0.27 +0.2
684,646 + TX73_003190 0.32 -0.1
684,663 + TX73_003190 0.37 +0.9
684,663 + TX73_003190 0.37 +0.8
684,663 + TX73_003190 0.37 +1.0
684,669 - TX73_003190 0.39 +0.4
684,671 - TX73_003190 0.40 +1.9
684,679 + TX73_003190 0.42 +0.5
684,679 + TX73_003190 0.42 -0.4
684,687 - TX73_003190 0.45 +0.7
684,687 - TX73_003190 0.45 -0.4
684,703 - TX73_003190 0.50 +0.2
684,716 + TX73_003190 0.54 +0.3
684,721 + TX73_003190 0.55 +0.4
684,724 - TX73_003190 0.56 +0.1
684,729 - TX73_003190 0.58 +0.4
684,731 + TX73_003190 0.59 +0.8
684,731 - TX73_003190 0.59 -0.3
684,747 + TX73_003190 0.64 -0.4
684,777 - TX73_003190 0.73 -0.0
684,793 - TX73_003190 0.78 +0.2
684,793 - TX73_003190 0.78 +0.3
684,798 + TX73_003190 0.79 +0.4
684,816 + TX73_003190 0.85 +0.2
684,818 - TX73_003190 0.86 -0.5
684,829 + TX73_003190 0.89 +0.1
684,829 + TX73_003190 0.89 +1.0
684,847 + +0.5
684,855 - +0.1
684,858 + -0.3
684,860 - -0.1
684,861 - +0.2
684,861 - +0.7
684,863 + -0.6
684,865 - -0.5
684,865 - +0.2
684,865 - +0.0
684,885 + +0.2
684,893 - +0.6
684,893 - +0.8
684,918 - +0.2
684,923 + -0.3
684,934 + -0.0
684,934 + -0.4
684,947 - +0.2
684,947 - +0.3
684,952 - +0.5
684,955 + -0.7
684,955 + +0.1
685,054 + TX73_003195 0.16 +0.4
685,095 + TX73_003195 0.23 -0.4
685,132 + TX73_003195 0.29 -1.1
685,209 + TX73_003195 0.41 -1.1
685,370 - TX73_003195 0.68 -1.3
685,417 - TX73_003195 0.76 -0.1
685,422 + TX73_003195 0.77 +0.4
685,555 + -1.5
685,555 + +0.0
685,555 + -0.2
685,555 + +0.6
685,555 + +0.5
685,555 + +0.2
685,563 - -1.7
685,563 - -0.1
685,563 - -0.3
685,568 - -0.5
685,569 + +0.1
685,601 - -1.4
685,639 + TX73_003200 0.14 -0.6
685,647 - TX73_003200 0.15 -0.7
685,647 - TX73_003200 0.15 -0.1
685,655 - TX73_003200 0.17 -1.4
685,678 - TX73_003200 0.23 -0.1
685,691 + TX73_003200 0.26 +0.4
685,701 + TX73_003200 0.28 +1.3
685,765 - TX73_003200 0.43 +0.7
685,772 + TX73_003200 0.45 +0.5
685,779 + TX73_003200 0.46 -0.1
685,780 - TX73_003200 0.46 +0.2
685,819 + TX73_003200 0.55 -1.3
685,829 + TX73_003200 0.58 -0.4
685,836 + TX73_003200 0.59 +0.1
685,837 - TX73_003200 0.60 +0.1
685,843 - TX73_003200 0.61 -1.8

Or see this region's nucleotide sequence