Experiment: PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_024880 and TX73_024885 are separated by 6 nucleotides TX73_024885 and TX73_024890 are separated by 206 nucleotides
TX73_024880: TX73_024880 - helix-turn-helix transcriptional regulator, at 5,402,815 to 5,403,789
_024880
TX73_024885: TX73_024885 - sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB, at 5,403,796 to 5,405,124
_024885
TX73_024890: TX73_024890 - HAMP domain-containing sensor histidine kinase, at 5,405,331 to 5,407,412
_024890
Position (kb) 5403
5404
5405
5406 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5402.833 kb on - strand at 5402.835 kb on + strand at 5402.863 kb on - strand at 5402.879 kb on + strand at 5402.887 kb on - strand at 5402.887 kb on - strand at 5402.926 kb on + strand, within TX73_024880 at 5402.934 kb on - strand, within TX73_024880 at 5402.965 kb on + strand, within TX73_024880 at 5402.965 kb on + strand, within TX73_024880 at 5402.970 kb on + strand, within TX73_024880 at 5402.970 kb on + strand, within TX73_024880 at 5402.971 kb on - strand, within TX73_024880 at 5402.973 kb on - strand, within TX73_024880 at 5402.973 kb on - strand, within TX73_024880 at 5402.973 kb on - strand, within TX73_024880 at 5402.973 kb on - strand, within TX73_024880 at 5402.985 kb on - strand, within TX73_024880 at 5402.994 kb on + strand, within TX73_024880 at 5402.994 kb on + strand, within TX73_024880 at 5403.002 kb on - strand, within TX73_024880 at 5403.002 kb on - strand, within TX73_024880 at 5403.017 kb on - strand, within TX73_024880 at 5403.039 kb on - strand, within TX73_024880 at 5403.065 kb on - strand, within TX73_024880 at 5403.105 kb on + strand, within TX73_024880 at 5403.109 kb on - strand, within TX73_024880 at 5403.171 kb on + strand, within TX73_024880 at 5403.171 kb on + strand, within TX73_024880 at 5403.180 kb on + strand, within TX73_024880 at 5403.189 kb on - strand, within TX73_024880 at 5403.189 kb on - strand, within TX73_024880 at 5403.189 kb on - strand, within TX73_024880 at 5403.194 kb on - strand, within TX73_024880 at 5403.212 kb on + strand, within TX73_024880 at 5403.247 kb on - strand, within TX73_024880 at 5403.272 kb on + strand, within TX73_024880 at 5403.307 kb on + strand, within TX73_024880 at 5403.315 kb on - strand, within TX73_024880 at 5403.317 kb on + strand, within TX73_024880 at 5403.345 kb on - strand, within TX73_024880 at 5403.361 kb on - strand, within TX73_024880 at 5403.369 kb on - strand, within TX73_024880 at 5403.404 kb on + strand, within TX73_024880 at 5403.412 kb on - strand, within TX73_024880 at 5403.413 kb on + strand, within TX73_024880 at 5403.417 kb on - strand, within TX73_024880 at 5403.437 kb on + strand, within TX73_024880 at 5403.437 kb on + strand, within TX73_024880 at 5403.487 kb on - strand, within TX73_024880 at 5403.494 kb on + strand, within TX73_024880 at 5403.494 kb on + strand, within TX73_024880 at 5403.502 kb on - strand, within TX73_024880 at 5403.512 kb on - strand, within TX73_024880 at 5403.542 kb on + strand, within TX73_024880 at 5403.550 kb on - strand, within TX73_024880 at 5403.565 kb on - strand, within TX73_024880 at 5403.621 kb on + strand, within TX73_024880 at 5403.621 kb on - strand, within TX73_024880 at 5403.637 kb on - strand, within TX73_024880 at 5403.652 kb on + strand, within TX73_024880 at 5403.652 kb on + strand, within TX73_024880 at 5403.655 kb on - strand, within TX73_024880 at 5403.660 kb on - strand, within TX73_024880 at 5403.660 kb on - strand, within TX73_024880 at 5403.660 kb on - strand, within TX73_024880 at 5403.660 kb on - strand, within TX73_024880 at 5403.660 kb on - strand, within TX73_024880 at 5403.660 kb on - strand, within TX73_024880 at 5403.678 kb on - strand, within TX73_024880 at 5403.681 kb on - strand, within TX73_024880 at 5403.683 kb on + strand, within TX73_024880 at 5403.683 kb on + strand, within TX73_024880 at 5403.686 kb on - strand, within TX73_024880 at 5403.691 kb on - strand, within TX73_024880 at 5403.739 kb on + strand at 5403.761 kb on + strand at 5403.761 kb on + strand at 5403.771 kb on + strand at 5403.894 kb on + strand at 5403.897 kb on - strand at 5403.898 kb on + strand at 5403.930 kb on - strand, within TX73_024885 at 5403.930 kb on - strand, within TX73_024885 at 5403.943 kb on - strand, within TX73_024885 at 5403.972 kb on + strand, within TX73_024885 at 5403.977 kb on + strand, within TX73_024885 at 5403.985 kb on - strand, within TX73_024885 at 5404.022 kb on + strand, within TX73_024885 at 5404.083 kb on + strand, within TX73_024885 at 5404.104 kb on - strand, within TX73_024885 at 5404.119 kb on + strand, within TX73_024885 at 5404.166 kb on - strand, within TX73_024885 at 5404.176 kb on + strand, within TX73_024885 at 5404.182 kb on + strand, within TX73_024885 at 5404.182 kb on + strand, within TX73_024885 at 5404.190 kb on - strand, within TX73_024885 at 5404.190 kb on - strand, within TX73_024885 at 5404.194 kb on + strand, within TX73_024885 at 5404.204 kb on + strand, within TX73_024885 at 5404.240 kb on - strand, within TX73_024885 at 5404.243 kb on - strand, within TX73_024885 at 5404.338 kb on - strand, within TX73_024885 at 5404.404 kb on + strand, within TX73_024885 at 5404.409 kb on + strand, within TX73_024885 at 5404.409 kb on + strand, within TX73_024885 at 5404.417 kb on - strand, within TX73_024885 at 5404.417 kb on - strand, within TX73_024885 at 5404.430 kb on + strand, within TX73_024885 at 5404.440 kb on - strand, within TX73_024885 at 5404.596 kb on - strand, within TX73_024885 at 5404.628 kb on - strand, within TX73_024885 at 5404.628 kb on - strand, within TX73_024885 at 5404.671 kb on - strand, within TX73_024885 at 5404.729 kb on - strand, within TX73_024885 at 5404.869 kb on + strand, within TX73_024885 at 5404.930 kb on + strand, within TX73_024885 at 5404.938 kb on - strand, within TX73_024885 at 5405.004 kb on - strand at 5405.021 kb on - strand at 5405.028 kb on - strand at 5405.074 kb on + strand at 5405.077 kb on - strand at 5405.095 kb on + strand at 5405.149 kb on + strand at 5405.219 kb on + strand at 5405.219 kb on + strand at 5405.222 kb on - strand at 5405.222 kb on - strand at 5405.236 kb on + strand at 5405.244 kb on - strand at 5405.244 kb on - strand at 5405.258 kb on + strand at 5405.260 kb on + strand at 5405.268 kb on - strand at 5405.317 kb on - strand at 5405.328 kb on + strand at 5405.329 kb on + strand at 5405.336 kb on - strand at 5405.367 kb on - strand at 5405.399 kb on + strand at 5405.426 kb on - strand at 5405.451 kb on + strand at 5405.456 kb on + strand at 5405.459 kb on - strand at 5405.459 kb on - strand at 5405.484 kb on + strand at 5405.485 kb on + strand at 5405.520 kb on + strand at 5405.521 kb on + strand at 5405.533 kb on + strand at 5405.533 kb on + strand at 5405.568 kb on + strand, within TX73_024890 at 5405.578 kb on - strand, within TX73_024890 at 5405.629 kb on + strand, within TX73_024890 at 5405.629 kb on + strand, within TX73_024890 at 5405.629 kb on + strand, within TX73_024890 at 5405.629 kb on + strand, within TX73_024890 at 5405.637 kb on - strand, within TX73_024890 at 5405.637 kb on - strand, within TX73_024890 at 5405.637 kb on - strand, within TX73_024890 at 5405.657 kb on + strand, within TX73_024890 at 5405.670 kb on + strand, within TX73_024890 at 5405.673 kb on - strand, within TX73_024890 at 5405.698 kb on + strand, within TX73_024890 at 5405.718 kb on + strand, within TX73_024890 at 5405.730 kb on + strand, within TX73_024890 at 5405.730 kb on + strand, within TX73_024890 at 5405.732 kb on - strand, within TX73_024890 at 5405.738 kb on - strand, within TX73_024890 at 5405.745 kb on + strand, within TX73_024890 at 5405.784 kb on + strand, within TX73_024890 at 5405.792 kb on - strand, within TX73_024890 at 5405.792 kb on - strand, within TX73_024890 at 5405.832 kb on + strand, within TX73_024890 at 5405.872 kb on + strand, within TX73_024890 at 5405.880 kb on - strand, within TX73_024890 at 5405.889 kb on + strand, within TX73_024890 at 5405.889 kb on + strand, within TX73_024890 at 5405.992 kb on + strand, within TX73_024890 at 5406.033 kb on + strand, within TX73_024890 at 5406.070 kb on - strand, within TX73_024890 at 5406.097 kb on + strand, within TX73_024890 at 5406.105 kb on - strand, within TX73_024890 at 5406.105 kb on - strand, within TX73_024890 at 5406.122 kb on - strand, within TX73_024890
Per-strain Table
Position Strand Gene LocusTag Fraction PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark remove 5,402,833 - -0.4 5,402,835 + +0.6 5,402,863 - -0.0 5,402,879 + +0.2 5,402,887 - -1.3 5,402,887 - -1.0 5,402,926 + TX73_024880 0.11 +0.6 5,402,934 - TX73_024880 0.12 +0.4 5,402,965 + TX73_024880 0.15 +0.2 5,402,965 + TX73_024880 0.15 +0.3 5,402,970 + TX73_024880 0.16 +0.1 5,402,970 + TX73_024880 0.16 -0.0 5,402,971 - TX73_024880 0.16 +0.6 5,402,973 - TX73_024880 0.16 +0.9 5,402,973 - TX73_024880 0.16 -1.2 5,402,973 - TX73_024880 0.16 -0.7 5,402,973 - TX73_024880 0.16 +0.0 5,402,985 - TX73_024880 0.17 +0.2 5,402,994 + TX73_024880 0.18 +0.8 5,402,994 + TX73_024880 0.18 -0.6 5,403,002 - TX73_024880 0.19 +0.4 5,403,002 - TX73_024880 0.19 +0.8 5,403,017 - TX73_024880 0.21 +0.1 5,403,039 - TX73_024880 0.23 +1.9 5,403,065 - TX73_024880 0.26 +0.3 5,403,105 + TX73_024880 0.30 -0.1 5,403,109 - TX73_024880 0.30 +0.0 5,403,171 + TX73_024880 0.37 -0.4 5,403,171 + TX73_024880 0.37 +0.5 5,403,180 + TX73_024880 0.37 +0.6 5,403,189 - TX73_024880 0.38 -1.1 5,403,189 - TX73_024880 0.38 -0.2 5,403,189 - TX73_024880 0.38 +0.4 5,403,194 - TX73_024880 0.39 +0.2 5,403,212 + TX73_024880 0.41 +0.6 5,403,247 - TX73_024880 0.44 -1.0 5,403,272 + TX73_024880 0.47 -0.4 5,403,307 + TX73_024880 0.50 -0.2 5,403,315 - TX73_024880 0.51 -0.8 5,403,317 + TX73_024880 0.51 +0.1 5,403,345 - TX73_024880 0.54 +0.1 5,403,361 - TX73_024880 0.56 +1.4 5,403,369 - TX73_024880 0.57 -0.2 5,403,404 + TX73_024880 0.60 +0.4 5,403,412 - TX73_024880 0.61 +0.1 5,403,413 + TX73_024880 0.61 +1.5 5,403,417 - TX73_024880 0.62 +1.3 5,403,437 + TX73_024880 0.64 +0.7 5,403,437 + TX73_024880 0.64 +0.5 5,403,487 - TX73_024880 0.69 +0.1 5,403,494 + TX73_024880 0.70 +0.7 5,403,494 + TX73_024880 0.70 +0.5 5,403,502 - TX73_024880 0.70 +0.5 5,403,512 - TX73_024880 0.71 +0.8 5,403,542 + TX73_024880 0.75 +0.3 5,403,550 - TX73_024880 0.75 +0.3 5,403,565 - TX73_024880 0.77 +0.6 5,403,621 + TX73_024880 0.83 +0.8 5,403,621 - TX73_024880 0.83 -0.1 5,403,637 - TX73_024880 0.84 -0.2 5,403,652 + TX73_024880 0.86 +0.7 5,403,652 + TX73_024880 0.86 +0.2 5,403,655 - TX73_024880 0.86 -1.0 5,403,660 - TX73_024880 0.87 +1.9 5,403,660 - TX73_024880 0.87 -0.3 5,403,660 - TX73_024880 0.87 +0.0 5,403,660 - TX73_024880 0.87 +0.2 5,403,660 - TX73_024880 0.87 +0.7 5,403,660 - TX73_024880 0.87 +0.3 5,403,678 - TX73_024880 0.89 +0.2 5,403,681 - TX73_024880 0.89 +0.2 5,403,683 + TX73_024880 0.89 +0.5 5,403,683 + TX73_024880 0.89 -0.4 5,403,686 - TX73_024880 0.89 +0.3 5,403,691 - TX73_024880 0.90 -0.5 5,403,739 + -0.0 5,403,761 + -0.2 5,403,761 + -0.3 5,403,771 + +0.8 5,403,894 + -1.2 5,403,897 - -0.8 5,403,898 + -0.8 5,403,930 - TX73_024885 0.10 +0.1 5,403,930 - TX73_024885 0.10 -0.6 5,403,943 - TX73_024885 0.11 +0.4 5,403,972 + TX73_024885 0.13 -0.3 5,403,977 + TX73_024885 0.14 -0.1 5,403,985 - TX73_024885 0.14 -0.4 5,404,022 + TX73_024885 0.17 -0.5 5,404,083 + TX73_024885 0.22 -1.2 5,404,104 - TX73_024885 0.23 -1.0 5,404,119 + TX73_024885 0.24 -0.3 5,404,166 - TX73_024885 0.28 +0.1 5,404,176 + TX73_024885 0.29 +0.2 5,404,182 + TX73_024885 0.29 +0.1 5,404,182 + TX73_024885 0.29 -0.2 5,404,190 - TX73_024885 0.30 -0.3 5,404,190 - TX73_024885 0.30 -0.2 5,404,194 + TX73_024885 0.30 -0.2 5,404,204 + TX73_024885 0.31 -0.7 5,404,240 - TX73_024885 0.33 -0.2 5,404,243 - TX73_024885 0.34 +0.1 5,404,338 - TX73_024885 0.41 -0.1 5,404,404 + TX73_024885 0.46 +1.5 5,404,409 + TX73_024885 0.46 -0.2 5,404,409 + TX73_024885 0.46 -0.2 5,404,417 - TX73_024885 0.47 -1.0 5,404,417 - TX73_024885 0.47 -0.3 5,404,430 + TX73_024885 0.48 -0.1 5,404,440 - TX73_024885 0.48 +0.4 5,404,596 - TX73_024885 0.60 -0.8 5,404,628 - TX73_024885 0.63 -0.8 5,404,628 - TX73_024885 0.63 -1.2 5,404,671 - TX73_024885 0.66 -0.3 5,404,729 - TX73_024885 0.70 -0.0 5,404,869 + TX73_024885 0.81 -0.1 5,404,930 + TX73_024885 0.85 -0.6 5,404,938 - TX73_024885 0.86 +0.4 5,405,004 - +0.2 5,405,021 - -0.8 5,405,028 - +0.2 5,405,074 + -1.0 5,405,077 - -0.5 5,405,095 + -1.4 5,405,149 + +0.2 5,405,219 + +0.7 5,405,219 + -0.3 5,405,222 - +0.3 5,405,222 - -1.6 5,405,236 + -0.4 5,405,244 - +0.6 5,405,244 - +0.6 5,405,258 + +0.5 5,405,260 + +0.6 5,405,268 - +0.4 5,405,317 - -0.3 5,405,328 + -0.4 5,405,329 + +0.6 5,405,336 - +0.2 5,405,367 - -0.0 5,405,399 + +0.3 5,405,426 - +0.3 5,405,451 + +0.6 5,405,456 + -0.1 5,405,459 - +0.3 5,405,459 - -0.7 5,405,484 + -1.0 5,405,485 + +0.2 5,405,520 + -0.2 5,405,521 + -0.3 5,405,533 + +0.4 5,405,533 + +0.1 5,405,568 + TX73_024890 0.11 +0.3 5,405,578 - TX73_024890 0.12 +0.5 5,405,629 + TX73_024890 0.14 +0.4 5,405,629 + TX73_024890 0.14 -0.1 5,405,629 + TX73_024890 0.14 -0.4 5,405,629 + TX73_024890 0.14 +1.1 5,405,637 - TX73_024890 0.15 +0.3 5,405,637 - TX73_024890 0.15 -1.1 5,405,637 - TX73_024890 0.15 +0.0 5,405,657 + TX73_024890 0.16 +0.1 5,405,670 + TX73_024890 0.16 -0.4 5,405,673 - TX73_024890 0.16 -0.8 5,405,698 + TX73_024890 0.18 +0.5 5,405,718 + TX73_024890 0.19 +1.0 5,405,730 + TX73_024890 0.19 +0.2 5,405,730 + TX73_024890 0.19 -0.5 5,405,732 - TX73_024890 0.19 -2.0 5,405,738 - TX73_024890 0.20 -0.1 5,405,745 + TX73_024890 0.20 -0.5 5,405,784 + TX73_024890 0.22 +0.5 5,405,792 - TX73_024890 0.22 +0.2 5,405,792 - TX73_024890 0.22 -0.2 5,405,832 + TX73_024890 0.24 +0.2 5,405,872 + TX73_024890 0.26 +0.3 5,405,880 - TX73_024890 0.26 -0.2 5,405,889 + TX73_024890 0.27 +0.1 5,405,889 + TX73_024890 0.27 +0.6 5,405,992 + TX73_024890 0.32 -0.5 5,406,033 + TX73_024890 0.34 +0.3 5,406,070 - TX73_024890 0.35 +0.0 5,406,097 + TX73_024890 0.37 -0.5 5,406,105 - TX73_024890 0.37 +0.2 5,406,105 - TX73_024890 0.37 +0.5 5,406,122 - TX73_024890 0.38 +0.2
Or see this region's nucleotide sequence