Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_000220

Experiment: PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_000215 and TX73_000220 overlap by 52 nucleotidesTX73_000220 and TX73_000225 are separated by 199 nucleotides TX73_000215: TX73_000215 - tRNA epoxyqueuosine(34) reductase QueG, at 48,211 to 49,419 _000215 TX73_000220: TX73_000220 - glutathione S-transferase family protein, at 49,368 to 50,060 _000220 TX73_000225: TX73_000225 - undecaprenyl-diphosphate phosphatase, at 50,260 to 51,066 _000225 Position (kb) 49 50 51Strain fitness (log2 ratio) -1 0 1 2at 48.385 kb on - strand, within TX73_000215at 48.440 kb on - strand, within TX73_000215at 48.441 kb on + strand, within TX73_000215at 48.462 kb on + strand, within TX73_000215at 48.472 kb on + strand, within TX73_000215at 48.478 kb on - strand, within TX73_000215at 48.505 kb on - strand, within TX73_000215at 48.530 kb on - strand, within TX73_000215at 48.532 kb on + strand, within TX73_000215at 48.532 kb on + strand, within TX73_000215at 48.535 kb on - strand, within TX73_000215at 48.539 kb on + strand, within TX73_000215at 48.540 kb on - strand, within TX73_000215at 48.540 kb on - strand, within TX73_000215at 48.540 kb on - strand, within TX73_000215at 48.555 kb on + strand, within TX73_000215at 48.555 kb on + strand, within TX73_000215at 48.555 kb on + strand, within TX73_000215at 48.555 kb on + strand, within TX73_000215at 48.562 kb on + strand, within TX73_000215at 48.563 kb on - strand, within TX73_000215at 48.563 kb on - strand, within TX73_000215at 48.563 kb on - strand, within TX73_000215at 48.566 kb on + strand, within TX73_000215at 48.566 kb on + strand, within TX73_000215at 48.574 kb on - strand, within TX73_000215at 48.581 kb on + strand, within TX73_000215at 48.584 kb on - strand, within TX73_000215at 48.600 kb on + strand, within TX73_000215at 48.620 kb on + strand, within TX73_000215at 48.634 kb on + strand, within TX73_000215at 48.642 kb on - strand, within TX73_000215at 48.657 kb on - strand, within TX73_000215at 48.669 kb on - strand, within TX73_000215at 48.688 kb on - strand, within TX73_000215at 48.695 kb on + strand, within TX73_000215at 48.713 kb on + strand, within TX73_000215at 48.721 kb on - strand, within TX73_000215at 48.750 kb on + strand, within TX73_000215at 48.770 kb on + strand, within TX73_000215at 48.784 kb on + strand, within TX73_000215at 48.784 kb on + strand, within TX73_000215at 48.784 kb on + strand, within TX73_000215at 48.784 kb on + strand, within TX73_000215at 48.785 kb on + strand, within TX73_000215at 48.789 kb on + strand, within TX73_000215at 48.791 kb on + strand, within TX73_000215at 48.792 kb on - strand, within TX73_000215at 48.797 kb on + strand, within TX73_000215at 48.805 kb on - strand, within TX73_000215at 48.807 kb on + strand, within TX73_000215at 48.815 kb on - strand, within TX73_000215at 48.817 kb on + strand, within TX73_000215at 48.835 kb on - strand, within TX73_000215at 48.846 kb on - strand, within TX73_000215at 48.857 kb on + strand, within TX73_000215at 48.872 kb on - strand, within TX73_000215at 48.872 kb on - strand, within TX73_000215at 48.889 kb on + strand, within TX73_000215at 48.935 kb on + strand, within TX73_000215at 48.948 kb on + strand, within TX73_000215at 48.948 kb on + strand, within TX73_000215at 48.949 kb on + strand, within TX73_000215at 48.968 kb on + strand, within TX73_000215at 48.972 kb on + strand, within TX73_000215at 48.972 kb on + strand, within TX73_000215at 48.972 kb on + strand, within TX73_000215at 48.980 kb on - strand, within TX73_000215at 48.993 kb on + strand, within TX73_000215at 49.006 kb on - strand, within TX73_000215at 49.011 kb on - strand, within TX73_000215at 49.035 kb on + strand, within TX73_000215at 49.055 kb on - strand, within TX73_000215at 49.062 kb on + strand, within TX73_000215at 49.062 kb on + strand, within TX73_000215at 49.069 kb on + strand, within TX73_000215at 49.069 kb on + strand, within TX73_000215at 49.069 kb on + strand, within TX73_000215at 49.070 kb on - strand, within TX73_000215at 49.077 kb on - strand, within TX73_000215at 49.089 kb on - strand, within TX73_000215at 49.104 kb on + strand, within TX73_000215at 49.106 kb on - strand, within TX73_000215at 49.114 kb on + strand, within TX73_000215at 49.117 kb on - strand, within TX73_000215at 49.119 kb on + strand, within TX73_000215at 49.119 kb on + strand, within TX73_000215at 49.119 kb on + strand, within TX73_000215at 49.119 kb on + strand, within TX73_000215at 49.119 kb on + strand, within TX73_000215at 49.119 kb on + strand, within TX73_000215at 49.127 kb on - strand, within TX73_000215at 49.127 kb on - strand, within TX73_000215at 49.127 kb on - strand, within TX73_000215at 49.127 kb on - strand, within TX73_000215at 49.127 kb on - strand, within TX73_000215at 49.127 kb on - strand, within TX73_000215at 49.134 kb on - strand, within TX73_000215at 49.134 kb on - strand, within TX73_000215at 49.134 kb on - strand, within TX73_000215at 49.135 kb on - strand, within TX73_000215at 49.139 kb on + strand, within TX73_000215at 49.160 kb on + strand, within TX73_000215at 49.163 kb on - strand, within TX73_000215at 49.167 kb on + strand, within TX73_000215at 49.170 kb on - strand, within TX73_000215at 49.192 kb on - strand, within TX73_000215at 49.233 kb on + strand, within TX73_000215at 49.278 kb on + strand, within TX73_000215at 49.278 kb on + strand, within TX73_000215at 49.286 kb on - strand, within TX73_000215at 49.286 kb on - strand, within TX73_000215at 49.286 kb on - strand, within TX73_000215at 49.300 kb on + strandat 49.300 kb on - strandat 49.334 kb on + strandat 49.342 kb on - strandat 49.348 kb on + strandat 49.365 kb on - strandat 50.059 kb on - strandat 50.062 kb on - strandat 50.067 kb on - strandat 50.072 kb on - strandat 50.072 kb on - strandat 50.074 kb on + strandat 50.090 kb on - strandat 50.090 kb on - strandat 50.120 kb on + strandat 50.126 kb on - strandat 50.131 kb on + strandat 50.135 kb on + strandat 50.136 kb on + strandat 50.139 kb on - strandat 50.141 kb on + strandat 50.148 kb on - strandat 50.195 kb on + strandat 50.203 kb on - strandat 50.204 kb on - strandat 50.206 kb on - strandat 50.209 kb on + strandat 50.216 kb on + strandat 50.240 kb on + strandat 50.240 kb on - strandat 50.250 kb on + strandat 50.250 kb on + strandat 50.255 kb on + strandat 50.274 kb on + strandat 50.274 kb on + strandat 50.274 kb on + strandat 50.282 kb on - strandat 50.282 kb on - strandat 51.046 kb on - strandat 51.053 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark
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48,385 - TX73_000215 0.14 +0.2
48,440 - TX73_000215 0.19 +0.2
48,441 + TX73_000215 0.19 -1.1
48,462 + TX73_000215 0.21 -0.2
48,472 + TX73_000215 0.22 +1.0
48,478 - TX73_000215 0.22 +0.3
48,505 - TX73_000215 0.24 -0.2
48,530 - TX73_000215 0.26 -0.5
48,532 + TX73_000215 0.27 -0.2
48,532 + TX73_000215 0.27 +0.5
48,535 - TX73_000215 0.27 -0.2
48,539 + TX73_000215 0.27 +0.2
48,540 - TX73_000215 0.27 +0.4
48,540 - TX73_000215 0.27 -0.5
48,540 - TX73_000215 0.27 +0.3
48,555 + TX73_000215 0.28 +0.2
48,555 + TX73_000215 0.28 -0.6
48,555 + TX73_000215 0.28 -0.6
48,555 + TX73_000215 0.28 +0.5
48,562 + TX73_000215 0.29 +0.6
48,563 - TX73_000215 0.29 +0.4
48,563 - TX73_000215 0.29 -0.1
48,563 - TX73_000215 0.29 +0.7
48,566 + TX73_000215 0.29 -0.2
48,566 + TX73_000215 0.29 -1.0
48,574 - TX73_000215 0.30 +0.5
48,581 + TX73_000215 0.31 +0.4
48,584 - TX73_000215 0.31 -0.3
48,600 + TX73_000215 0.32 -1.2
48,620 + TX73_000215 0.34 +0.0
48,634 + TX73_000215 0.35 -0.4
48,642 - TX73_000215 0.36 +0.8
48,657 - TX73_000215 0.37 -0.0
48,669 - TX73_000215 0.38 -0.1
48,688 - TX73_000215 0.39 +0.1
48,695 + TX73_000215 0.40 -0.2
48,713 + TX73_000215 0.42 -0.0
48,721 - TX73_000215 0.42 -0.6
48,750 + TX73_000215 0.45 +0.1
48,770 + TX73_000215 0.46 +0.4
48,784 + TX73_000215 0.47 -0.1
48,784 + TX73_000215 0.47 -0.3
48,784 + TX73_000215 0.47 -0.7
48,784 + TX73_000215 0.47 -0.1
48,785 + TX73_000215 0.47 +1.0
48,789 + TX73_000215 0.48 +0.1
48,791 + TX73_000215 0.48 +0.4
48,792 - TX73_000215 0.48 +0.6
48,797 + TX73_000215 0.48 +0.7
48,805 - TX73_000215 0.49 +0.3
48,807 + TX73_000215 0.49 +0.5
48,815 - TX73_000215 0.50 -0.6
48,817 + TX73_000215 0.50 -0.6
48,835 - TX73_000215 0.52 +0.4
48,846 - TX73_000215 0.53 +0.3
48,857 + TX73_000215 0.53 +0.7
48,872 - TX73_000215 0.55 -0.5
48,872 - TX73_000215 0.55 +0.3
48,889 + TX73_000215 0.56 -0.4
48,935 + TX73_000215 0.60 +0.2
48,948 + TX73_000215 0.61 +0.6
48,948 + TX73_000215 0.61 +0.1
48,949 + TX73_000215 0.61 +1.9
48,968 + TX73_000215 0.63 -0.4
48,972 + TX73_000215 0.63 +0.2
48,972 + TX73_000215 0.63 -0.8
48,972 + TX73_000215 0.63 +0.6
48,980 - TX73_000215 0.64 +0.2
48,993 + TX73_000215 0.65 -0.2
49,006 - TX73_000215 0.66 +0.6
49,011 - TX73_000215 0.66 -1.0
49,035 + TX73_000215 0.68 +1.1
49,055 - TX73_000215 0.70 +0.6
49,062 + TX73_000215 0.70 -0.3
49,062 + TX73_000215 0.70 -0.5
49,069 + TX73_000215 0.71 +0.5
49,069 + TX73_000215 0.71 +0.4
49,069 + TX73_000215 0.71 +0.1
49,070 - TX73_000215 0.71 +1.7
49,077 - TX73_000215 0.72 +1.1
49,089 - TX73_000215 0.73 +0.1
49,104 + TX73_000215 0.74 +0.2
49,106 - TX73_000215 0.74 +0.2
49,114 + TX73_000215 0.75 +0.8
49,117 - TX73_000215 0.75 +0.0
49,119 + TX73_000215 0.75 -0.1
49,119 + TX73_000215 0.75 -0.5
49,119 + TX73_000215 0.75 -0.4
49,119 + TX73_000215 0.75 -0.2
49,119 + TX73_000215 0.75 -0.8
49,119 + TX73_000215 0.75 +0.4
49,127 - TX73_000215 0.76 +0.3
49,127 - TX73_000215 0.76 +0.6
49,127 - TX73_000215 0.76 +2.0
49,127 - TX73_000215 0.76 -0.2
49,127 - TX73_000215 0.76 -0.6
49,127 - TX73_000215 0.76 -0.2
49,134 - TX73_000215 0.76 +0.6
49,134 - TX73_000215 0.76 -1.0
49,134 - TX73_000215 0.76 -0.4
49,135 - TX73_000215 0.76 +0.5
49,139 + TX73_000215 0.77 -0.9
49,160 + TX73_000215 0.78 +0.1
49,163 - TX73_000215 0.79 -0.6
49,167 + TX73_000215 0.79 +0.1
49,170 - TX73_000215 0.79 +0.8
49,192 - TX73_000215 0.81 +0.3
49,233 + TX73_000215 0.85 -0.4
49,278 + TX73_000215 0.88 +0.6
49,278 + TX73_000215 0.88 +1.0
49,286 - TX73_000215 0.89 -0.0
49,286 - TX73_000215 0.89 -0.4
49,286 - TX73_000215 0.89 -0.1
49,300 + -0.7
49,300 - -0.9
49,334 + -0.0
49,342 - +0.1
49,348 + -0.9
49,365 - -0.5
50,059 - +0.3
50,062 - +1.4
50,067 - +0.2
50,072 - -0.6
50,072 - +0.8
50,074 + +0.2
50,090 - +0.8
50,090 - -0.3
50,120 + -0.4
50,126 - +1.3
50,131 + -0.2
50,135 + +1.6
50,136 + -1.1
50,139 - -1.1
50,141 + +0.2
50,148 - +0.2
50,195 + -0.2
50,203 - +0.2
50,204 - -0.3
50,206 - +0.3
50,209 + -0.4
50,216 + -0.1
50,240 + +0.7
50,240 - -0.3
50,250 + -0.1
50,250 + -0.3
50,255 + +0.0
50,274 + +0.3
50,274 + -0.6
50,274 + +0.2
50,282 - +0.2
50,282 - -1.4
51,046 - -0.1
51,053 + +0.4

Or see this region's nucleotide sequence