Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002880

Experiment: PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002870 and TX73_002875 are separated by 48 nucleotidesTX73_002875 and TX73_002880 are separated by 119 nucleotidesTX73_002880 and TX73_002885 are separated by 280 nucleotides TX73_002870: TX73_002870 - ureidoglycolate lyase, at 616,458 to 616,970 _002870 TX73_002875: TX73_002875 - class I SAM-dependent methyltransferase, at 617,019 to 617,639 _002875 TX73_002880: TX73_002880 - HNH endonuclease, at 617,759 to 618,316 _002880 TX73_002885: TX73_002885 - cysteine synthase A, at 618,597 to 619,595 _002885 Position (kb) 617 618 619Strain fitness (log2 ratio) -1 0 1at 616.791 kb on + strand, within TX73_002870at 616.808 kb on + strand, within TX73_002870at 616.836 kb on + strand, within TX73_002870at 616.842 kb on - strand, within TX73_002870at 616.884 kb on - strand, within TX73_002870at 616.908 kb on - strand, within TX73_002870at 616.920 kb on - strandat 616.925 kb on + strandat 616.933 kb on - strandat 616.937 kb on + strandat 616.981 kb on + strandat 617.002 kb on - strandat 617.011 kb on + strandat 617.025 kb on - strandat 617.046 kb on + strandat 617.054 kb on - strandat 617.097 kb on - strand, within TX73_002875at 617.117 kb on + strand, within TX73_002875at 617.149 kb on + strand, within TX73_002875at 617.181 kb on + strand, within TX73_002875at 617.194 kb on - strand, within TX73_002875at 617.194 kb on - strand, within TX73_002875at 617.329 kb on + strand, within TX73_002875at 617.337 kb on - strand, within TX73_002875at 617.358 kb on + strand, within TX73_002875at 617.383 kb on - strand, within TX73_002875at 617.419 kb on - strand, within TX73_002875at 617.465 kb on + strand, within TX73_002875at 617.500 kb on - strand, within TX73_002875at 617.531 kb on + strand, within TX73_002875at 617.549 kb on + strand, within TX73_002875at 617.549 kb on + strand, within TX73_002875at 617.549 kb on + strand, within TX73_002875at 617.554 kb on + strand, within TX73_002875at 617.559 kb on + strand, within TX73_002875at 617.559 kb on + strand, within TX73_002875at 617.562 kb on - strand, within TX73_002875at 617.562 kb on - strand, within TX73_002875at 617.562 kb on - strand, within TX73_002875at 617.567 kb on - strand, within TX73_002875at 617.582 kb on + strandat 617.590 kb on - strandat 617.590 kb on - strandat 617.604 kb on - strandat 617.604 kb on - strandat 617.692 kb on - strandat 617.702 kb on - strandat 617.762 kb on - strandat 617.859 kb on + strand, within TX73_002880at 617.867 kb on - strand, within TX73_002880at 617.896 kb on - strand, within TX73_002880at 617.957 kb on + strand, within TX73_002880at 617.976 kb on + strand, within TX73_002880at 617.984 kb on - strand, within TX73_002880at 618.006 kb on - strand, within TX73_002880at 618.006 kb on - strand, within TX73_002880at 618.006 kb on - strand, within TX73_002880at 618.051 kb on + strand, within TX73_002880at 618.060 kb on + strand, within TX73_002880at 618.060 kb on + strand, within TX73_002880at 618.157 kb on - strand, within TX73_002880at 618.160 kb on - strand, within TX73_002880at 618.164 kb on + strand, within TX73_002880at 618.172 kb on - strand, within TX73_002880at 618.172 kb on - strand, within TX73_002880at 618.246 kb on - strand, within TX73_002880at 618.323 kb on + strandat 618.323 kb on + strandat 618.323 kb on + strandat 618.331 kb on - strandat 618.331 kb on - strandat 618.348 kb on + strandat 618.373 kb on - strandat 618.381 kb on - strandat 618.392 kb on + strandat 618.393 kb on + strandat 618.396 kb on - strandat 618.442 kb on + strandat 618.446 kb on - strandat 618.546 kb on + strandat 618.558 kb on - strandat 618.572 kb on - strandat 618.594 kb on + strandat 618.599 kb on + strandat 618.602 kb on - strandat 618.620 kb on + strandat 618.620 kb on + strandat 618.628 kb on - strandat 618.628 kb on - strandat 618.628 kb on - strandat 618.634 kb on + strandat 618.669 kb on + strandat 618.764 kb on - strand, within TX73_002885at 618.785 kb on + strand, within TX73_002885at 618.793 kb on + strand, within TX73_002885at 618.793 kb on + strand, within TX73_002885at 618.844 kb on - strand, within TX73_002885at 618.854 kb on + strand, within TX73_002885at 618.864 kb on + strand, within TX73_002885at 618.890 kb on + strand, within TX73_002885at 618.898 kb on - strand, within TX73_002885at 618.934 kb on - strand, within TX73_002885at 618.989 kb on - strand, within TX73_002885at 618.997 kb on + strand, within TX73_002885at 618.997 kb on + strand, within TX73_002885at 618.997 kb on + strand, within TX73_002885at 619.029 kb on + strand, within TX73_002885at 619.036 kb on - strand, within TX73_002885at 619.037 kb on - strand, within TX73_002885at 619.039 kb on - strand, within TX73_002885at 619.074 kb on + strand, within TX73_002885at 619.098 kb on - strand, within TX73_002885at 619.138 kb on - strand, within TX73_002885at 619.151 kb on + strand, within TX73_002885at 619.161 kb on + strand, within TX73_002885at 619.171 kb on + strand, within TX73_002885at 619.176 kb on + strand, within TX73_002885at 619.176 kb on + strand, within TX73_002885at 619.176 kb on + strand, within TX73_002885at 619.176 kb on + strand, within TX73_002885at 619.205 kb on + strand, within TX73_002885at 619.261 kb on + strand, within TX73_002885at 619.263 kb on + strand, within TX73_002885at 619.265 kb on + strand, within TX73_002885at 619.298 kb on + strand, within TX73_002885at 619.301 kb on - strand, within TX73_002885

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Per-strain Table

Position Strand Gene LocusTag Fraction PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark
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616,791 + TX73_002870 0.65 -0.1
616,808 + TX73_002870 0.68 -0.2
616,836 + TX73_002870 0.74 +0.3
616,842 - TX73_002870 0.75 +0.2
616,884 - TX73_002870 0.83 +0.0
616,908 - TX73_002870 0.88 +0.4
616,920 - +0.7
616,925 + -0.3
616,933 - -0.5
616,937 + -0.4
616,981 + +0.0
617,002 - +0.4
617,011 + +0.6
617,025 - -0.4
617,046 + -0.8
617,054 - -0.4
617,097 - TX73_002875 0.13 +0.0
617,117 + TX73_002875 0.16 +0.1
617,149 + TX73_002875 0.21 +0.0
617,181 + TX73_002875 0.26 +0.2
617,194 - TX73_002875 0.28 -0.1
617,194 - TX73_002875 0.28 -0.3
617,329 + TX73_002875 0.50 +0.1
617,337 - TX73_002875 0.51 +0.7
617,358 + TX73_002875 0.55 -0.4
617,383 - TX73_002875 0.59 +0.5
617,419 - TX73_002875 0.64 -0.2
617,465 + TX73_002875 0.72 +0.4
617,500 - TX73_002875 0.77 +0.7
617,531 + TX73_002875 0.82 +0.1
617,549 + TX73_002875 0.85 +0.8
617,549 + TX73_002875 0.85 -0.5
617,549 + TX73_002875 0.85 +0.1
617,554 + TX73_002875 0.86 -0.4
617,559 + TX73_002875 0.87 +0.2
617,559 + TX73_002875 0.87 -0.0
617,562 - TX73_002875 0.87 -0.6
617,562 - TX73_002875 0.87 -1.1
617,562 - TX73_002875 0.87 -0.7
617,567 - TX73_002875 0.88 +0.1
617,582 + +0.5
617,590 - +0.0
617,590 - +0.6
617,604 - +0.2
617,604 - +0.2
617,692 - -1.0
617,702 - +0.0
617,762 - -0.1
617,859 + TX73_002880 0.18 -0.4
617,867 - TX73_002880 0.19 -0.8
617,896 - TX73_002880 0.25 +0.9
617,957 + TX73_002880 0.35 +0.5
617,976 + TX73_002880 0.39 -1.3
617,984 - TX73_002880 0.40 -0.3
618,006 - TX73_002880 0.44 +1.2
618,006 - TX73_002880 0.44 -1.3
618,006 - TX73_002880 0.44 +0.0
618,051 + TX73_002880 0.52 -0.8
618,060 + TX73_002880 0.54 -0.1
618,060 + TX73_002880 0.54 -1.4
618,157 - TX73_002880 0.71 +0.4
618,160 - TX73_002880 0.72 -0.5
618,164 + TX73_002880 0.73 -0.5
618,172 - TX73_002880 0.74 -0.7
618,172 - TX73_002880 0.74 -0.3
618,246 - TX73_002880 0.87 -0.6
618,323 + -0.6
618,323 + -0.5
618,323 + -1.1
618,331 - -0.8
618,331 - -0.1
618,348 + -0.3
618,373 - +0.0
618,381 - -0.5
618,392 + +0.1
618,393 + -0.7
618,396 - -1.1
618,442 + +0.2
618,446 - -0.5
618,546 + -0.9
618,558 - -0.5
618,572 - +0.8
618,594 + +0.4
618,599 + +1.3
618,602 - +1.0
618,620 + +0.8
618,620 + +0.4
618,628 - +0.3
618,628 - +0.5
618,628 - +0.3
618,634 + +0.0
618,669 + +1.3
618,764 - TX73_002885 0.17 -1.4
618,785 + TX73_002885 0.19 +0.3
618,793 + TX73_002885 0.20 +0.4
618,793 + TX73_002885 0.20 +0.5
618,844 - TX73_002885 0.25 +1.1
618,854 + TX73_002885 0.26 +0.1
618,864 + TX73_002885 0.27 +0.9
618,890 + TX73_002885 0.29 +0.3
618,898 - TX73_002885 0.30 +0.4
618,934 - TX73_002885 0.34 -0.3
618,989 - TX73_002885 0.39 -0.2
618,997 + TX73_002885 0.40 -0.1
618,997 + TX73_002885 0.40 -0.7
618,997 + TX73_002885 0.40 +0.4
619,029 + TX73_002885 0.43 +0.3
619,036 - TX73_002885 0.44 +0.4
619,037 - TX73_002885 0.44 -0.3
619,039 - TX73_002885 0.44 +0.2
619,074 + TX73_002885 0.48 -0.1
619,098 - TX73_002885 0.50 +1.6
619,138 - TX73_002885 0.54 -0.1
619,151 + TX73_002885 0.55 -0.3
619,161 + TX73_002885 0.56 +0.7
619,171 + TX73_002885 0.57 +0.1
619,176 + TX73_002885 0.58 +0.3
619,176 + TX73_002885 0.58 +1.4
619,176 + TX73_002885 0.58 +0.7
619,176 + TX73_002885 0.58 +0.9
619,205 + TX73_002885 0.61 +0.5
619,261 + TX73_002885 0.66 -0.3
619,263 + TX73_002885 0.67 -0.2
619,265 + TX73_002885 0.67 -0.2
619,298 + TX73_002885 0.70 +0.4
619,301 - TX73_002885 0.70 +0.2

Or see this region's nucleotide sequence