Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_000620

Experiment: PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_000610 and TX73_000615 are separated by 4 nucleotidesTX73_000615 and TX73_000620 are separated by 7 nucleotidesTX73_000620 and TX73_000625 are separated by 92 nucleotides TX73_000610: TX73_000610 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 133,329 to 133,886 _000610 TX73_000615: TX73_000615 - dTDP-4-dehydrorhamnose reductase, at 133,891 to 134,784 _000615 TX73_000620: TX73_000620 - glucose-1-phosphate thymidylyltransferase RfbA, at 134,792 to 135,661 _000620 TX73_000625: TX73_000625 - hypothetical protein, at 135,754 to 136,602 _000625 Position (kb) 134 135 136Strain fitness (log2 ratio) -1 0 1at 133.804 kb on - strand, within TX73_000610at 133.899 kb on - strandat 133.951 kb on + strandat 133.988 kb on - strand, within TX73_000615at 134.021 kb on + strand, within TX73_000615at 134.024 kb on - strand, within TX73_000615at 134.034 kb on - strand, within TX73_000615at 134.044 kb on - strand, within TX73_000615at 134.088 kb on + strand, within TX73_000615at 134.091 kb on - strand, within TX73_000615at 134.099 kb on + strand, within TX73_000615at 134.200 kb on + strand, within TX73_000615at 134.237 kb on - strand, within TX73_000615at 134.247 kb on - strand, within TX73_000615at 134.248 kb on + strand, within TX73_000615at 134.298 kb on + strand, within TX73_000615at 134.323 kb on - strand, within TX73_000615at 134.333 kb on + strand, within TX73_000615at 134.333 kb on + strand, within TX73_000615at 134.341 kb on - strand, within TX73_000615at 134.341 kb on - strand, within TX73_000615at 134.377 kb on + strand, within TX73_000615at 134.416 kb on + strand, within TX73_000615at 134.467 kb on + strand, within TX73_000615at 134.563 kb on - strand, within TX73_000615at 134.589 kb on + strand, within TX73_000615at 134.745 kb on + strandat 134.745 kb on + strandat 134.748 kb on - strandat 134.823 kb on + strandat 134.823 kb on + strandat 134.831 kb on - strandat 134.831 kb on - strandat 134.852 kb on - strandat 134.936 kb on + strand, within TX73_000620at 134.944 kb on - strand, within TX73_000620at 134.981 kb on + strand, within TX73_000620at 135.021 kb on + strand, within TX73_000620at 135.024 kb on - strand, within TX73_000620at 135.031 kb on + strand, within TX73_000620at 135.031 kb on + strand, within TX73_000620at 135.039 kb on - strand, within TX73_000620at 135.039 kb on - strand, within TX73_000620at 135.039 kb on - strand, within TX73_000620at 135.053 kb on - strand, within TX73_000620at 135.063 kb on - strand, within TX73_000620at 135.192 kb on + strand, within TX73_000620at 135.223 kb on - strand, within TX73_000620at 135.275 kb on + strand, within TX73_000620at 135.284 kb on + strand, within TX73_000620at 135.307 kb on - strand, within TX73_000620at 135.378 kb on + strand, within TX73_000620at 135.437 kb on + strand, within TX73_000620at 135.517 kb on + strand, within TX73_000620at 135.519 kb on - strand, within TX73_000620at 135.524 kb on + strand, within TX73_000620at 135.540 kb on + strand, within TX73_000620at 135.548 kb on - strand, within TX73_000620at 135.550 kb on - strand, within TX73_000620at 135.576 kb on + strandat 135.579 kb on - strandat 135.585 kb on + strandat 135.655 kb on + strandat 135.663 kb on - strandat 135.663 kb on - strandat 135.673 kb on - strandat 135.715 kb on - strandat 135.715 kb on - strandat 135.746 kb on - strandat 135.768 kb on - strandat 135.775 kb on - strandat 135.819 kb on + strandat 135.825 kb on - strandat 135.827 kb on - strandat 135.885 kb on - strand, within TX73_000625at 135.927 kb on + strand, within TX73_000625at 135.927 kb on + strand, within TX73_000625at 135.927 kb on + strand, within TX73_000625at 135.935 kb on - strand, within TX73_000625at 135.935 kb on - strand, within TX73_000625at 135.936 kb on + strand, within TX73_000625at 136.030 kb on + strand, within TX73_000625at 136.038 kb on - strand, within TX73_000625at 136.098 kb on + strand, within TX73_000625at 136.178 kb on + strand, within TX73_000625at 136.188 kb on - strand, within TX73_000625at 136.196 kb on - strand, within TX73_000625at 136.208 kb on + strand, within TX73_000625at 136.212 kb on + strand, within TX73_000625at 136.235 kb on + strand, within TX73_000625at 136.260 kb on + strand, within TX73_000625at 136.260 kb on + strand, within TX73_000625at 136.273 kb on - strand, within TX73_000625at 136.300 kb on + strand, within TX73_000625at 136.335 kb on - strand, within TX73_000625at 136.368 kb on + strand, within TX73_000625at 136.368 kb on + strand, within TX73_000625at 136.376 kb on - strand, within TX73_000625at 136.381 kb on + strand, within TX73_000625at 136.386 kb on + strand, within TX73_000625at 136.387 kb on + strand, within TX73_000625at 136.406 kb on + strand, within TX73_000625at 136.437 kb on - strand, within TX73_000625at 136.451 kb on + strand, within TX73_000625at 136.459 kb on - strand, within TX73_000625at 136.470 kb on + strand, within TX73_000625at 136.474 kb on - strand, within TX73_000625at 136.478 kb on - strand, within TX73_000625at 136.493 kb on - strand, within TX73_000625at 136.494 kb on + strand, within TX73_000625at 136.502 kb on - strand, within TX73_000625at 136.509 kb on + strand, within TX73_000625at 136.509 kb on + strand, within TX73_000625at 136.517 kb on - strand, within TX73_000625at 136.545 kb on - strandat 136.611 kb on - strandat 136.618 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark
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133,804 - TX73_000610 0.85 +0.5
133,899 - +0.2
133,951 + +0.3
133,988 - TX73_000615 0.11 +1.1
134,021 + TX73_000615 0.15 +0.1
134,024 - TX73_000615 0.15 +0.6
134,034 - TX73_000615 0.16 -0.7
134,044 - TX73_000615 0.17 +0.7
134,088 + TX73_000615 0.22 -0.3
134,091 - TX73_000615 0.22 +0.0
134,099 + TX73_000615 0.23 +0.3
134,200 + TX73_000615 0.35 +1.6
134,237 - TX73_000615 0.39 +0.7
134,247 - TX73_000615 0.40 +1.5
134,248 + TX73_000615 0.40 +0.7
134,298 + TX73_000615 0.46 +0.6
134,323 - TX73_000615 0.48 +0.3
134,333 + TX73_000615 0.49 +0.1
134,333 + TX73_000615 0.49 +1.5
134,341 - TX73_000615 0.50 +1.4
134,341 - TX73_000615 0.50 -1.1
134,377 + TX73_000615 0.54 -0.8
134,416 + TX73_000615 0.59 +1.0
134,467 + TX73_000615 0.64 +0.4
134,563 - TX73_000615 0.75 -0.4
134,589 + TX73_000615 0.78 +0.7
134,745 + -0.5
134,745 + +0.1
134,748 - +0.7
134,823 + +0.4
134,823 + -0.2
134,831 - +0.6
134,831 - -0.3
134,852 - -0.4
134,936 + TX73_000620 0.17 -0.5
134,944 - TX73_000620 0.17 +0.4
134,981 + TX73_000620 0.22 -0.9
135,021 + TX73_000620 0.26 -0.3
135,024 - TX73_000620 0.27 -0.4
135,031 + TX73_000620 0.27 -0.3
135,031 + TX73_000620 0.27 -0.8
135,039 - TX73_000620 0.28 -1.0
135,039 - TX73_000620 0.28 -1.2
135,039 - TX73_000620 0.28 -0.9
135,053 - TX73_000620 0.30 -0.5
135,063 - TX73_000620 0.31 -0.2
135,192 + TX73_000620 0.46 -0.3
135,223 - TX73_000620 0.50 -0.4
135,275 + TX73_000620 0.56 +0.4
135,284 + TX73_000620 0.57 +0.0
135,307 - TX73_000620 0.59 -0.7
135,378 + TX73_000620 0.67 +0.2
135,437 + TX73_000620 0.74 -0.8
135,517 + TX73_000620 0.83 +0.2
135,519 - TX73_000620 0.84 -1.1
135,524 + TX73_000620 0.84 +0.5
135,540 + TX73_000620 0.86 -0.3
135,548 - TX73_000620 0.87 -0.1
135,550 - TX73_000620 0.87 +0.2
135,576 + -0.4
135,579 - -0.5
135,585 + -0.0
135,655 + -0.9
135,663 - -0.0
135,663 - +1.0
135,673 - +0.3
135,715 - -0.2
135,715 - +0.1
135,746 - +0.3
135,768 - -0.2
135,775 - -0.6
135,819 + -0.2
135,825 - +0.2
135,827 - +0.1
135,885 - TX73_000625 0.15 +0.4
135,927 + TX73_000625 0.20 +0.1
135,927 + TX73_000625 0.20 -0.3
135,927 + TX73_000625 0.20 -0.7
135,935 - TX73_000625 0.21 -1.2
135,935 - TX73_000625 0.21 -0.4
135,936 + TX73_000625 0.21 -0.5
136,030 + TX73_000625 0.33 -0.4
136,038 - TX73_000625 0.33 +0.2
136,098 + TX73_000625 0.41 -0.3
136,178 + TX73_000625 0.50 +0.0
136,188 - TX73_000625 0.51 +0.1
136,196 - TX73_000625 0.52 +0.2
136,208 + TX73_000625 0.53 -0.4
136,212 + TX73_000625 0.54 +0.3
136,235 + TX73_000625 0.57 +0.4
136,260 + TX73_000625 0.60 -0.3
136,260 + TX73_000625 0.60 +0.4
136,273 - TX73_000625 0.61 -0.3
136,300 + TX73_000625 0.64 -0.0
136,335 - TX73_000625 0.68 +0.0
136,368 + TX73_000625 0.72 -0.7
136,368 + TX73_000625 0.72 +0.4
136,376 - TX73_000625 0.73 +0.4
136,381 + TX73_000625 0.74 +0.2
136,386 + TX73_000625 0.74 -0.1
136,387 + TX73_000625 0.75 +0.2
136,406 + TX73_000625 0.77 -0.5
136,437 - TX73_000625 0.80 -0.1
136,451 + TX73_000625 0.82 +0.8
136,459 - TX73_000625 0.83 -1.3
136,470 + TX73_000625 0.84 -0.5
136,474 - TX73_000625 0.85 +0.2
136,478 - TX73_000625 0.85 +0.1
136,493 - TX73_000625 0.87 +0.3
136,494 + TX73_000625 0.87 +0.2
136,502 - TX73_000625 0.88 -0.7
136,509 + TX73_000625 0.89 +0.5
136,509 + TX73_000625 0.89 -0.1
136,517 - TX73_000625 0.90 +1.5
136,545 - -0.3
136,611 - -0.6
136,618 - -0.1

Or see this region's nucleotide sequence