Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_024110

Experiment: PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_024105 and TX73_024110 are separated by 61 nucleotidesTX73_024110 and TX73_024115 are separated by 34 nucleotidesTX73_024115 and TX73_024120 are separated by 37 nucleotides TX73_024105: TX73_024105 - fructose-bisphosphate aldolase class II, at 5,225,637 to 5,226,722 _024105 TX73_024110: TX73_024110 - transketolase, at 5,226,784 to 5,228,799 _024110 TX73_024115: TX73_024115 - phosphoribulokinase, at 5,228,834 to 5,229,709 _024115 TX73_024120: TX73_024120 - class 1 fructose-bisphosphatase, at 5,229,747 to 5,230,778 _024120 Position (kb) 5226 5227 5228 5229Strain fitness (log2 ratio) -2 -1 0 1at 5226.727 kb on - strandat 5226.749 kb on + strandat 5227.133 kb on - strand, within TX73_024110at 5228.815 kb on - strandat 5228.839 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark
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5,226,727 - +0.8
5,226,749 + -0.5
5,227,133 - TX73_024110 0.17 -2.1
5,228,815 - -0.1
5,228,839 - -0.2

Or see this region's nucleotide sequence