Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_004165

Experiment: PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_004160 and TX73_004165 are separated by 136 nucleotidesTX73_004165 and TX73_004170 are separated by 139 nucleotides TX73_004160: TX73_004160 - ligase-associated DNA damage response DEXH box helicase, at 895,773 to 898,490 _004160 TX73_004165: TX73_004165 - ligase-associated DNA damage response endonuclease PdeM, at 898,627 to 899,277 _004165 TX73_004170: TX73_004170 - LysR substrate-binding domain-containing protein, at 899,417 to 900,280 _004170 Position (kb) 898 899 900Strain fitness (log2 ratio) -2 -1 0 1at 897.635 kb on + strand, within TX73_004160at 897.635 kb on + strand, within TX73_004160at 897.635 kb on + strand, within TX73_004160at 897.643 kb on - strand, within TX73_004160at 897.643 kb on - strand, within TX73_004160at 897.656 kb on + strand, within TX73_004160at 897.656 kb on + strand, within TX73_004160at 897.656 kb on + strand, within TX73_004160at 897.677 kb on + strand, within TX73_004160at 897.795 kb on + strand, within TX73_004160at 897.808 kb on - strand, within TX73_004160at 897.996 kb on + strand, within TX73_004160at 897.996 kb on + strand, within TX73_004160at 898.004 kb on + strand, within TX73_004160at 898.005 kb on - strand, within TX73_004160at 898.094 kb on - strand, within TX73_004160at 898.155 kb on - strand, within TX73_004160at 898.200 kb on + strand, within TX73_004160at 898.215 kb on + strand, within TX73_004160at 898.220 kb on + strandat 898.220 kb on + strandat 898.220 kb on + strandat 898.228 kb on - strandat 898.228 kb on - strandat 898.260 kb on - strandat 898.265 kb on - strandat 898.288 kb on + strandat 898.296 kb on - strandat 898.326 kb on - strandat 898.367 kb on - strandat 898.435 kb on + strandat 898.443 kb on - strandat 898.479 kb on + strandat 898.497 kb on + strandat 898.511 kb on - strandat 898.519 kb on + strandat 898.519 kb on + strandat 898.524 kb on + strandat 898.527 kb on - strandat 898.562 kb on + strandat 898.562 kb on + strandat 898.570 kb on + strandat 898.589 kb on + strandat 898.602 kb on + strandat 898.624 kb on + strandat 898.651 kb on + strandat 898.651 kb on + strandat 898.668 kb on + strandat 898.668 kb on + strandat 898.671 kb on - strandat 898.676 kb on - strandat 898.676 kb on - strandat 898.676 kb on - strandat 898.697 kb on + strand, within TX73_004165at 898.700 kb on - strand, within TX73_004165at 898.705 kb on - strand, within TX73_004165at 898.720 kb on + strand, within TX73_004165at 898.728 kb on - strand, within TX73_004165at 898.728 kb on - strand, within TX73_004165at 898.760 kb on - strand, within TX73_004165at 898.783 kb on - strand, within TX73_004165at 898.785 kb on + strand, within TX73_004165at 898.785 kb on + strand, within TX73_004165at 898.793 kb on - strand, within TX73_004165at 898.810 kb on + strand, within TX73_004165at 898.818 kb on - strand, within TX73_004165at 898.882 kb on - strand, within TX73_004165at 898.903 kb on + strand, within TX73_004165at 898.989 kb on - strand, within TX73_004165at 898.990 kb on - strand, within TX73_004165at 899.000 kb on + strand, within TX73_004165at 899.015 kb on + strand, within TX73_004165at 899.067 kb on + strand, within TX73_004165at 899.093 kb on + strand, within TX73_004165at 899.111 kb on - strand, within TX73_004165at 899.212 kb on + strand, within TX73_004165at 899.245 kb on + strandat 899.262 kb on - strandat 899.284 kb on + strandat 899.309 kb on - strandat 899.350 kb on + strandat 899.437 kb on - strandat 899.438 kb on - strandat 899.460 kb on - strandat 899.497 kb on - strandat 899.594 kb on + strand, within TX73_004170at 899.602 kb on + strand, within TX73_004170at 899.605 kb on - strand, within TX73_004170at 899.644 kb on - strand, within TX73_004170at 899.651 kb on + strand, within TX73_004170at 899.651 kb on + strand, within TX73_004170at 899.651 kb on + strand, within TX73_004170at 899.651 kb on + strand, within TX73_004170at 899.659 kb on - strand, within TX73_004170at 899.659 kb on - strand, within TX73_004170at 899.659 kb on - strand, within TX73_004170at 899.659 kb on - strand, within TX73_004170at 899.659 kb on - strand, within TX73_004170at 899.659 kb on - strand, within TX73_004170at 899.659 kb on - strand, within TX73_004170at 899.677 kb on - strand, within TX73_004170at 899.762 kb on - strand, within TX73_004170at 899.770 kb on + strand, within TX73_004170at 899.792 kb on + strand, within TX73_004170at 899.849 kb on - strand, within TX73_004170at 899.934 kb on - strand, within TX73_004170at 899.967 kb on + strand, within TX73_004170at 899.967 kb on + strand, within TX73_004170at 899.967 kb on + strand, within TX73_004170at 899.967 kb on + strand, within TX73_004170at 899.975 kb on - strand, within TX73_004170at 899.977 kb on + strand, within TX73_004170at 899.980 kb on - strand, within TX73_004170at 899.986 kb on + strand, within TX73_004170at 900.010 kb on + strand, within TX73_004170at 900.018 kb on + strand, within TX73_004170at 900.026 kb on - strand, within TX73_004170at 900.054 kb on - strand, within TX73_004170at 900.057 kb on + strand, within TX73_004170at 900.075 kb on + strand, within TX73_004170at 900.075 kb on + strand, within TX73_004170at 900.083 kb on - strand, within TX73_004170at 900.088 kb on - strand, within TX73_004170at 900.093 kb on - strand, within TX73_004170at 900.200 kb on + strandat 900.229 kb on - strandat 900.236 kb on + strandat 900.257 kb on + strandat 900.265 kb on + strandat 900.273 kb on - strandat 900.273 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark
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897,635 + TX73_004160 0.69 -0.3
897,635 + TX73_004160 0.69 -0.1
897,635 + TX73_004160 0.69 +0.7
897,643 - TX73_004160 0.69 -0.0
897,643 - TX73_004160 0.69 +0.5
897,656 + TX73_004160 0.69 +0.4
897,656 + TX73_004160 0.69 +1.1
897,656 + TX73_004160 0.69 +1.5
897,677 + TX73_004160 0.70 +0.7
897,795 + TX73_004160 0.74 +0.7
897,808 - TX73_004160 0.75 +0.1
897,996 + TX73_004160 0.82 +0.4
897,996 + TX73_004160 0.82 +0.2
898,004 + TX73_004160 0.82 +0.1
898,005 - TX73_004160 0.82 +0.6
898,094 - TX73_004160 0.85 -0.3
898,155 - TX73_004160 0.88 +0.4
898,200 + TX73_004160 0.89 +0.9
898,215 + TX73_004160 0.90 +0.3
898,220 + +0.1
898,220 + +0.2
898,220 + +0.2
898,228 - -0.6
898,228 - -0.3
898,260 - +0.2
898,265 - +0.5
898,288 + +0.2
898,296 - -1.8
898,326 - +0.1
898,367 - -0.3
898,435 + +0.9
898,443 - -0.2
898,479 + -0.1
898,497 + +0.3
898,511 - +0.2
898,519 + +0.0
898,519 + +1.3
898,524 + +0.5
898,527 - +0.7
898,562 + -0.3
898,562 + +0.1
898,570 + +0.4
898,589 + -0.0
898,602 + -0.4
898,624 + -0.2
898,651 + +0.7
898,651 + +0.6
898,668 + +0.7
898,668 + +0.5
898,671 - +0.2
898,676 - -0.2
898,676 - +0.4
898,676 - +0.4
898,697 + TX73_004165 0.11 +0.7
898,700 - TX73_004165 0.11 -0.5
898,705 - TX73_004165 0.12 -0.4
898,720 + TX73_004165 0.14 -1.1
898,728 - TX73_004165 0.16 +0.3
898,728 - TX73_004165 0.16 +0.4
898,760 - TX73_004165 0.20 +0.2
898,783 - TX73_004165 0.24 +0.7
898,785 + TX73_004165 0.24 -0.5
898,785 + TX73_004165 0.24 +0.1
898,793 - TX73_004165 0.25 +0.3
898,810 + TX73_004165 0.28 -0.1
898,818 - TX73_004165 0.29 +0.5
898,882 - TX73_004165 0.39 +0.2
898,903 + TX73_004165 0.42 -0.8
898,989 - TX73_004165 0.56 +0.6
898,990 - TX73_004165 0.56 -0.7
899,000 + TX73_004165 0.57 -0.7
899,015 + TX73_004165 0.60 -1.5
899,067 + TX73_004165 0.68 -1.1
899,093 + TX73_004165 0.72 -0.8
899,111 - TX73_004165 0.74 -0.1
899,212 + TX73_004165 0.90 +0.1
899,245 + -0.7
899,262 - +0.1
899,284 + -0.0
899,309 - +1.4
899,350 + +0.3
899,437 - -0.7
899,438 - -0.3
899,460 - -0.8
899,497 - +0.4
899,594 + TX73_004170 0.20 +0.5
899,602 + TX73_004170 0.21 -0.6
899,605 - TX73_004170 0.22 -0.7
899,644 - TX73_004170 0.26 -0.1
899,651 + TX73_004170 0.27 -0.4
899,651 + TX73_004170 0.27 +0.5
899,651 + TX73_004170 0.27 +0.1
899,651 + TX73_004170 0.27 +0.7
899,659 - TX73_004170 0.28 +0.9
899,659 - TX73_004170 0.28 +0.1
899,659 - TX73_004170 0.28 +0.1
899,659 - TX73_004170 0.28 -0.9
899,659 - TX73_004170 0.28 +0.1
899,659 - TX73_004170 0.28 +0.7
899,659 - TX73_004170 0.28 +0.7
899,677 - TX73_004170 0.30 -0.8
899,762 - TX73_004170 0.40 -0.4
899,770 + TX73_004170 0.41 -0.4
899,792 + TX73_004170 0.43 +0.4
899,849 - TX73_004170 0.50 -0.5
899,934 - TX73_004170 0.60 -0.4
899,967 + TX73_004170 0.64 -1.0
899,967 + TX73_004170 0.64 +1.0
899,967 + TX73_004170 0.64 +0.5
899,967 + TX73_004170 0.64 +0.1
899,975 - TX73_004170 0.65 -0.7
899,977 + TX73_004170 0.65 -0.5
899,980 - TX73_004170 0.65 +0.4
899,986 + TX73_004170 0.66 -0.3
900,010 + TX73_004170 0.69 +1.5
900,018 + TX73_004170 0.70 -0.3
900,026 - TX73_004170 0.70 -0.5
900,054 - TX73_004170 0.74 -0.4
900,057 + TX73_004170 0.74 -0.8
900,075 + TX73_004170 0.76 +0.0
900,075 + TX73_004170 0.76 -0.1
900,083 - TX73_004170 0.77 -0.6
900,088 - TX73_004170 0.78 -0.4
900,093 - TX73_004170 0.78 -0.8
900,200 + -0.2
900,229 - -0.0
900,236 + +0.4
900,257 + +0.6
900,265 + +0.5
900,273 - +0.0
900,273 - +0.8

Or see this region's nucleotide sequence