Experiment: PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_020670 and TX73_020675 are separated by 182 nucleotides TX73_020675 and TX73_020680 are separated by 121 nucleotides
TX73_020670: TX73_020670 - lipopolysaccharide heptosyltransferase I, at 4,511,024 to 4,511,968
_020670
TX73_020675: TX73_020675 - UDP-glucose 4-epimerase GalE, at 4,512,151 to 4,513,164
_020675
TX73_020680: TX73_020680 - ABC transporter ATP-binding protein, at 4,513,286 to 4,515,088
_020680
Position (kb) 4512
4513
4514 Strain fitness (log2 ratio) -2
-1
0
1 at 4512.003 kb on - strand at 4512.008 kb on - strand at 4512.107 kb on + strand at 4512.107 kb on + strand at 4512.115 kb on - strand at 4512.125 kb on + strand at 4512.140 kb on - strand at 4512.141 kb on - strand at 4512.199 kb on + strand at 4512.199 kb on + strand at 4512.199 kb on + strand at 4512.207 kb on - strand at 4512.207 kb on - strand at 4512.207 kb on - strand at 4512.207 kb on - strand at 4512.218 kb on - strand at 4512.218 kb on - strand at 4512.235 kb on - strand at 4512.235 kb on - strand at 4512.282 kb on - strand, within TX73_020675 at 4512.288 kb on + strand, within TX73_020675 at 4512.299 kb on - strand, within TX73_020675 at 4512.391 kb on + strand, within TX73_020675 at 4512.450 kb on + strand, within TX73_020675 at 4512.453 kb on - strand, within TX73_020675 at 4512.458 kb on + strand, within TX73_020675 at 4512.468 kb on + strand, within TX73_020675 at 4512.516 kb on - strand, within TX73_020675 at 4512.521 kb on - strand, within TX73_020675 at 4512.547 kb on - strand, within TX73_020675 at 4512.568 kb on + strand, within TX73_020675 at 4512.583 kb on + strand, within TX73_020675 at 4512.586 kb on - strand, within TX73_020675 at 4512.643 kb on + strand, within TX73_020675 at 4512.691 kb on + strand, within TX73_020675 at 4512.769 kb on + strand, within TX73_020675 at 4512.779 kb on - strand, within TX73_020675 at 4512.816 kb on - strand, within TX73_020675 at 4512.892 kb on + strand, within TX73_020675 at 4512.900 kb on - strand, within TX73_020675 at 4512.935 kb on - strand, within TX73_020675 at 4512.984 kb on - strand, within TX73_020675 at 4513.051 kb on + strand, within TX73_020675 at 4513.058 kb on - strand, within TX73_020675 at 4513.082 kb on + strand at 4513.083 kb on - strand at 4513.090 kb on - strand at 4513.095 kb on + strand at 4513.213 kb on + strand at 4513.221 kb on - strand at 4513.238 kb on + strand at 4513.244 kb on - strand at 4513.244 kb on - strand at 4513.268 kb on + strand at 4513.318 kb on + strand at 4513.318 kb on + strand at 4513.318 kb on + strand at 4513.321 kb on + strand at 4513.326 kb on - strand at 4513.326 kb on - strand at 4513.326 kb on - strand at 4513.326 kb on - strand at 4513.326 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark remove 4,512,003 - +0.4 4,512,008 - -2.0 4,512,107 + -0.0 4,512,107 + +0.1 4,512,115 - -1.2 4,512,125 + -0.1 4,512,140 - +0.1 4,512,141 - -0.9 4,512,199 + +0.3 4,512,199 + +0.0 4,512,199 + +1.3 4,512,207 - -0.9 4,512,207 - +0.3 4,512,207 - -0.3 4,512,207 - +0.2 4,512,218 - -0.1 4,512,218 - -0.1 4,512,235 - -0.7 4,512,235 - -0.5 4,512,282 - TX73_020675 0.13 +0.1 4,512,288 + TX73_020675 0.14 +0.3 4,512,299 - TX73_020675 0.15 -0.5 4,512,391 + TX73_020675 0.24 +0.9 4,512,450 + TX73_020675 0.29 +0.4 4,512,453 - TX73_020675 0.30 -1.0 4,512,458 + TX73_020675 0.30 -0.0 4,512,468 + TX73_020675 0.31 -0.1 4,512,516 - TX73_020675 0.36 -0.8 4,512,521 - TX73_020675 0.36 +1.3 4,512,547 - TX73_020675 0.39 +0.9 4,512,568 + TX73_020675 0.41 -0.0 4,512,583 + TX73_020675 0.43 -0.3 4,512,586 - TX73_020675 0.43 +0.2 4,512,643 + TX73_020675 0.49 +0.2 4,512,691 + TX73_020675 0.53 +0.2 4,512,769 + TX73_020675 0.61 +0.2 4,512,779 - TX73_020675 0.62 +0.2 4,512,816 - TX73_020675 0.66 +0.2 4,512,892 + TX73_020675 0.73 -0.1 4,512,900 - TX73_020675 0.74 +0.2 4,512,935 - TX73_020675 0.77 +0.1 4,512,984 - TX73_020675 0.82 +0.3 4,513,051 + TX73_020675 0.89 +0.2 4,513,058 - TX73_020675 0.89 +0.6 4,513,082 + +0.6 4,513,083 - +0.5 4,513,090 - +0.5 4,513,095 + +0.2 4,513,213 + +0.3 4,513,221 - -0.1 4,513,238 + -0.7 4,513,244 - +0.6 4,513,244 - +0.5 4,513,268 + -0.0 4,513,318 + -0.9 4,513,318 + +0.4 4,513,318 + -0.8 4,513,321 + -0.7 4,513,326 - -0.6 4,513,326 - +0.2 4,513,326 - +0.5 4,513,326 - +0.2 4,513,326 - +0.2
Or see this region's nucleotide sequence