Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_020220

Experiment: PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark
4,400,696	+				-0.2
4,400,701	-				+1.9
4,400,704	-				+0.7
4,400,710	+				+0.2
4,400,716	-				+0.5
4,400,720	+				+0.2
4,400,721	+				+0.5
4,400,726	-				+0.6
4,400,757	-				+0.5
4,400,757	-				+0.8
4,400,767	-				+0.1
4,400,782	-				+0.4
4,400,782	-				-0.0
4,400,782	-				+0.3
4,400,782	-				-0.2
4,400,803	-				+1.2
4,400,805	+				+0.8
4,400,836	-				+0.6
4,400,836	-				+0.9
4,400,876	+		TX73_020215	0.11	+1.8
4,400,898	-		TX73_020215	0.14	+0.6
4,400,898	-		TX73_020215	0.14	+0.8
4,400,927	+		TX73_020215	0.18	+1.5
4,400,980	-		TX73_020215	0.25	+1.0
4,400,982	+		TX73_020215	0.25	+0.8
4,400,982	+		TX73_020215	0.25	+0.9
4,400,992	+		TX73_020215	0.26	+0.9
4,400,995	-		TX73_020215	0.27	+0.6
4,401,009	+		TX73_020215	0.28	+0.9
4,401,009	+		TX73_020215	0.28	+0.7
4,401,011	+		TX73_020215	0.29	+0.6
4,401,022	+		TX73_020215	0.30	+0.8
4,401,034	+		TX73_020215	0.32	+0.8
4,401,039	-		TX73_020215	0.32	+0.9
4,401,080	+		TX73_020215	0.38	+1.1
4,401,088	-		TX73_020215	0.39	+1.3
4,401,103	-		TX73_020215	0.41	+0.6
4,401,103	-		TX73_020215	0.41	+0.8
4,401,157	+		TX73_020215	0.48	+0.9
4,401,165	-		TX73_020215	0.49	+0.8
4,401,173	+		TX73_020215	0.50	+1.1
4,401,176	-		TX73_020215	0.50	+0.9
4,401,179	-		TX73_020215	0.51	+0.8
4,401,179	-		TX73_020215	0.51	+1.2
4,401,231	+		TX73_020215	0.57	+0.9
4,401,252	+		TX73_020215	0.60	+0.8
4,401,252	+		TX73_020215	0.60	+0.4
4,401,259	-		TX73_020215	0.61	+1.4
4,401,260	-		TX73_020215	0.61	+0.8
4,401,260	-		TX73_020215	0.61	+0.8
4,401,325	+		TX73_020215	0.70	+0.8
4,401,347	+		TX73_020215	0.73	+1.1
4,401,366	-		TX73_020215	0.75	+1.0
4,401,366	-		TX73_020215	0.75	+1.0
4,401,376	-		TX73_020215	0.77	+1.0
4,401,393	-		TX73_020215	0.79	+0.8
4,401,401	+		TX73_020215	0.80	+0.6
4,401,401	+		TX73_020215	0.80	+0.9
4,401,403	+		TX73_020215	0.80	+0.9
4,401,406	+		TX73_020215	0.80	+0.9
4,401,409	-		TX73_020215	0.81	+0.3
4,401,424	-		TX73_020215	0.83	+0.9
4,401,460	-		TX73_020215	0.88	+0.8
4,401,492	-				+1.0
4,401,551	-				+0.7
4,401,553	+				+0.1
4,401,561	-				-0.7
4,401,561	-				+1.3
4,401,575	+				+0.8
4,401,575	+				+1.0
4,401,575	+				+0.6
4,401,576	+				+1.2
4,401,576	+				+1.2
4,401,576	+				+0.9
4,401,576	-				+0.3
4,401,583	-				+1.0
4,401,588	-				+0.8
4,401,624	-				+0.9
4,401,678	+		TX73_020220	0.14	+0.8
4,401,698	-		TX73_020220	0.17	+0.9
4,401,708	-		TX73_020220	0.18	+0.4
4,401,708	-		TX73_020220	0.18	+1.0
4,401,730	+		TX73_020220	0.21	+0.9
4,401,738	-		TX73_020220	0.22	+1.4
4,401,738	-		TX73_020220	0.22	+0.9
4,401,738	-		TX73_020220	0.22	+0.8
4,401,740	+		TX73_020220	0.22	+1.1
4,401,740	+		TX73_020220	0.22	+0.9
4,401,748	-		TX73_020220	0.23	+0.4
4,401,748	-		TX73_020220	0.23	+1.0
4,401,748	-		TX73_020220	0.23	+0.8
4,401,787	-		TX73_020220	0.28	+0.9
4,401,810	+		TX73_020220	0.31	+0.9
4,401,811	-		TX73_020220	0.31	+0.6
4,401,817	+		TX73_020220	0.32	+0.9
4,401,818	-		TX73_020220	0.32	+0.8
4,401,822	+		TX73_020220	0.32	+1.3
4,401,848	-		TX73_020220	0.36	+1.0
4,401,891	+		TX73_020220	0.41	+0.7
4,401,905	-		TX73_020220	0.43	+0.9
4,401,932	+		TX73_020220	0.46	+1.0
4,401,932	+		TX73_020220	0.46	+0.8
4,401,936	-		TX73_020220	0.47	+0.7
4,401,962	+		TX73_020220	0.50	+0.8
4,401,962	+		TX73_020220	0.50	+1.2
4,401,962	+		TX73_020220	0.50	+1.4
4,401,962	+		TX73_020220	0.50	+1.0
4,401,962	+		TX73_020220	0.50	+0.9
4,401,962	+		TX73_020220	0.50	+0.7
4,401,970	-		TX73_020220	0.51	+0.9
4,402,009	+		TX73_020220	0.56	+0.9
4,402,059	+		TX73_020220	0.62	+1.0
4,402,059	+		TX73_020220	0.62	+0.9
4,402,063	+		TX73_020220	0.63	+1.4
4,402,095	-		TX73_020220	0.67	+0.8
4,402,108	+		TX73_020220	0.69	+1.1
4,402,127	+		TX73_020220	0.71	+1.0
4,402,165	-		TX73_020220	0.76	+1.0
4,402,167	+		TX73_020220	0.76	+0.9
4,402,167	+		TX73_020220	0.76	+0.8
4,402,170	-		TX73_020220	0.76	+0.9
4,402,175	-		TX73_020220	0.77	+1.0
4,402,195	+		TX73_020220	0.80	+0.9
4,402,203	-		TX73_020220	0.81	+1.2
4,402,255	+		TX73_020220	0.87	+0.8
4,402,263	-		TX73_020220	0.88	+0.7
4,402,268	-		TX73_020220	0.89	+1.5
4,402,273	-		TX73_020220	0.89	+1.0
4,402,310	-				+1.1
4,402,310	-				+1.5
4,402,312	+				+1.2
4,402,334	-				+1.2
4,402,380	+				+0.7
4,402,383	-				+1.2
4,402,462	-				+1.0
4,402,482	+		TX73_020225	0.11	+1.2
4,402,581	+		TX73_020225	0.21	+1.1
4,402,617	-		TX73_020225	0.24	+0.9
4,402,620	+		TX73_020225	0.24	+1.1
4,402,635	-		TX73_020225	0.26	+0.8
4,402,654	+		TX73_020225	0.28	+1.2
4,402,662	-		TX73_020225	0.29	+0.9
4,402,662	-		TX73_020225	0.29	+0.4
4,402,703	+		TX73_020225	0.33	+0.1
4,402,712	+		TX73_020225	0.33	+0.8
4,402,714	+		TX73_020225	0.34	+1.2
4,402,722	-		TX73_020225	0.34	+1.1
4,402,751	+		TX73_020225	0.37	+1.0
4,402,752	+		TX73_020225	0.37	+1.0
4,402,759	+		TX73_020225	0.38	+1.3
4,402,759	+		TX73_020225	0.38	+1.2
4,402,760	-		TX73_020225	0.38	+1.0
4,402,777	+		TX73_020225	0.40	+1.0
4,402,983	+		TX73_020225	0.60	+0.7
4,402,983	+		TX73_020225	0.60	+1.4
4,402,983	+		TX73_020225	0.60	+0.8
4,402,991	-		TX73_020225	0.61	+1.1
4,402,991	-		TX73_020225	0.61	+1.6
4,402,995	+		TX73_020225	0.61	+3.5
4,403,003	-		TX73_020225	0.62	+0.7
4,403,003	-		TX73_020225	0.62	+1.0
4,403,008	-		TX73_020225	0.62	+1.5
4,403,042	-		TX73_020225	0.66	+1.2
4,403,132	+		TX73_020225	0.74	+1.0
4,403,133	-		TX73_020225	0.74	+1.1
4,403,135	-		TX73_020225	0.75	+1.3
4,403,140	+		TX73_020225	0.75	+0.3
4,403,145	+		TX73_020225	0.76	+1.5
4,403,145	+		TX73_020225	0.76	+0.6
4,403,148	-		TX73_020225	0.76	+0.7
4,403,197	+		TX73_020225	0.81	+1.2
4,403,197	+		TX73_020225	0.81	+0.8
4,403,202	+		TX73_020225	0.81	+1.2
4,403,205	-		TX73_020225	0.81	+1.2
4,403,205	-		TX73_020225	0.81	+1.2
4,403,228	+		TX73_020225	0.84	+0.8
4,403,251	-		TX73_020225	0.86	+1.2
4,403,252	+		TX73_020225	0.86	+0.8
4,403,258	-		TX73_020225	0.86	+1.3
4,403,308	-				+0.7
4,403,319	-				+1.3
4,403,319	-				+0.5