Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_008415

Experiment: PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark
1,817,758	+		TX73_008405	0.72	-1.9
1,817,758	+		TX73_008405	0.72	+0.6
1,817,765	+		TX73_008405	0.73	-0.2
1,817,765	+		TX73_008405	0.73	-0.8
1,817,765	+		TX73_008405	0.73	-0.5
1,817,766	-		TX73_008405	0.73	+0.6
1,817,773	-		TX73_008405	0.74	+1.1
1,817,773	-		TX73_008405	0.74	+1.0
1,817,773	-		TX73_008405	0.74	+0.7
1,817,786	+		TX73_008405	0.75	+1.4
1,817,801	+		TX73_008405	0.77	+0.3
1,817,854	-		TX73_008405	0.83	-0.1
1,817,859	-		TX73_008405	0.83	+1.4
1,817,866	-		TX73_008405	0.84	+0.1
1,817,899	-		TX73_008405	0.87	+0.0
1,817,950	+				+0.8
1,817,960	+				-0.7
1,817,960	+				+0.2
1,817,961	-				-0.1
1,817,968	-				+0.6
1,817,968	-				+0.7
1,817,978	-				+0.6
1,817,994	+				+0.4
1,818,018	-				+0.1
1,818,057	-				-0.1
1,818,078	+				+0.1
1,818,128	-				+0.2
1,818,134	+				-0.6
1,818,147	-				-0.7
1,818,150	+				+0.6
1,818,152	-				-0.4
1,818,158	-				-0.1
1,818,176	+				-0.5
1,818,176	+				-1.5
1,818,179	-				-0.1
1,818,184	-				-0.0
1,818,205	+				-0.3
1,818,213	-				+0.1
1,818,215	+				-0.2
1,818,232	+				-0.9
1,818,265	+		TX73_008410	0.24	+1.1
1,818,283	-		TX73_008410	0.33	-0.1
1,818,283	-		TX73_008410	0.33	-0.5
1,818,288	+		TX73_008410	0.36	-0.4
1,818,297	-		TX73_008410	0.40	+1.5
1,818,325	-		TX73_008410	0.54	+0.4
1,818,351	+		TX73_008410	0.67	+0.7
1,818,370	+		TX73_008410	0.77	-0.4
1,818,370	+		TX73_008410	0.77	-0.3
1,818,370	-		TX73_008410	0.77	-1.2
1,818,380	-		TX73_008410	0.82	-0.5
1,818,384	+		TX73_008410	0.84	+0.3
1,818,396	+		TX73_008410	0.90	-0.0
1,818,402	-				+0.2
1,818,402	-				-0.3
1,818,405	-				-0.7
1,818,409	-				+0.5
1,818,423	+				+0.2
1,818,435	+				+0.7
1,818,445	-				-0.5
1,818,500	+				-0.2
1,818,512	+				+0.7
1,818,540	-				-1.1
1,818,541	+				-1.2
1,818,622	+				-0.9
1,818,649	+				+0.9
1,818,652	+				+0.1
1,818,657	-				+0.5
1,818,670	+				+0.3
1,818,678	-				-0.2
1,818,686	-				-0.8
1,818,692	-				+1.0
1,818,746	+				-0.2
1,818,747	-				+0.9
1,818,747	-				-0.5
1,818,753	-				-0.0
1,818,764	+				+0.8
1,818,764	+				+0.7
1,818,782	+				+1.3
1,818,804	+				+1.2
1,818,809	-				+0.6
1,818,819	-				+1.2
1,818,819	-				+0.9
1,818,871	+				+1.2
1,818,876	+				+1.0
1,818,891	-				+1.3
1,818,891	-				+0.7
1,818,953	-				+1.2
1,818,960	+				+1.1
1,818,973	+		TX73_008415	0.10	+1.2
1,818,974	-		TX73_008415	0.10	+1.1
1,818,976	-		TX73_008415	0.10	+1.2
1,818,981	-		TX73_008415	0.10	+0.5
1,818,981	-		TX73_008415	0.10	+1.2
1,818,987	-		TX73_008415	0.11	+1.0
1,819,006	+		TX73_008415	0.12	+0.8
1,819,014	-		TX73_008415	0.12	+1.0
1,819,019	-		TX73_008415	0.12	+1.1
1,819,037	+		TX73_008415	0.13	+1.1
1,819,053	+		TX73_008415	0.14	+0.9
1,819,053	+		TX73_008415	0.14	+0.8
1,819,058	+		TX73_008415	0.14	+1.4
1,819,083	-		TX73_008415	0.15	+1.0
1,819,094	+		TX73_008415	0.15	+1.1
1,819,094	+		TX73_008415	0.15	+0.7
1,819,102	-		TX73_008415	0.16	+1.2
1,819,111	-		TX73_008415	0.16	+1.7
1,819,124	-		TX73_008415	0.17	+1.0
1,819,130	-		TX73_008415	0.17	+1.2
1,819,135	+		TX73_008415	0.17	+1.3
1,819,143	-		TX73_008415	0.18	+1.3
1,819,153	+		TX73_008415	0.18	+1.3
1,819,174	+		TX73_008415	0.19	+1.1
1,819,214	-		TX73_008415	0.21	+1.0
1,819,221	+		TX73_008415	0.21	+1.5
1,819,229	-		TX73_008415	0.22	+1.5
1,819,245	-		TX73_008415	0.22	+1.1
1,819,250	-		TX73_008415	0.22	+1.1
1,819,256	+		TX73_008415	0.23	+1.2
1,819,256	+		TX73_008415	0.23	+1.0
1,819,271	+		TX73_008415	0.23	+1.7
1,819,297	-		TX73_008415	0.25	+1.2
1,819,299	+		TX73_008415	0.25	+0.9
1,819,299	+		TX73_008415	0.25	+1.1
1,819,307	-		TX73_008415	0.25	+1.1
1,819,318	+		TX73_008415	0.26	+1.2
1,819,321	-		TX73_008415	0.26	+0.9
1,819,326	+		TX73_008415	0.26	+1.3
1,819,326	-		TX73_008415	0.26	+1.1
1,819,334	-		TX73_008415	0.26	+1.0
1,819,340	+		TX73_008415	0.26	+1.0
1,819,348	-		TX73_008415	0.27	+1.4
1,819,348	-		TX73_008415	0.27	+0.9
1,819,350	+		TX73_008415	0.27	+1.4
1,819,371	+		TX73_008415	0.28	+1.0
1,819,394	+		TX73_008415	0.29	+1.3
1,819,394	+		TX73_008415	0.29	+1.2
1,819,394	+		TX73_008415	0.29	+1.0
1,819,408	-		TX73_008415	0.30	+1.5
1,819,410	-		TX73_008415	0.30	+1.0
1,819,418	+		TX73_008415	0.30	+1.2
1,819,426	-		TX73_008415	0.30	+1.1
1,819,435	+		TX73_008415	0.31	+0.9
1,819,452	+		TX73_008415	0.31	+1.1
1,819,464	+		TX73_008415	0.32	+1.3
1,819,502	-		TX73_008415	0.34	+1.2
1,819,510	+		TX73_008415	0.34	+1.3
1,819,583	+		TX73_008415	0.37	+0.9
1,819,603	-		TX73_008415	0.38	+0.9
1,819,603	-		TX73_008415	0.38	+1.2
1,819,613	-		TX73_008415	0.39	+0.8
1,819,628	-		TX73_008415	0.39	+1.3
1,819,642	-		TX73_008415	0.40	+1.1
1,819,667	+		TX73_008415	0.41	+1.2
1,819,667	+		TX73_008415	0.41	+1.3
1,819,667	+		TX73_008415	0.41	+1.3
1,819,668	-		TX73_008415	0.41	+1.2
1,819,668	-		TX73_008415	0.41	+1.1
1,819,675	-		TX73_008415	0.41	+1.2
1,819,680	-		TX73_008415	0.42	+1.2
1,819,688	-		TX73_008415	0.42	+1.1
1,819,690	+		TX73_008415	0.42	+0.9
1,819,690	+		TX73_008415	0.42	+1.0
1,819,698	+		TX73_008415	0.43	+1.4
1,819,698	-		TX73_008415	0.43	+1.3
1,819,706	+		TX73_008415	0.43	+1.2
1,819,744	-		TX73_008415	0.45	+1.1
1,819,759	+		TX73_008415	0.45	+1.4
1,819,759	+		TX73_008415	0.45	+1.2
1,819,767	-		TX73_008415	0.46	+1.0
1,819,774	+		TX73_008415	0.46	+1.1
1,819,840	-		TX73_008415	0.49	+1.0
1,819,853	+		TX73_008415	0.49	+1.1
1,819,856	-		TX73_008415	0.50	+1.3
1,819,861	-		TX73_008415	0.50	+0.8
1,819,887	+		TX73_008415	0.51	+1.0
1,819,897	-		TX73_008415	0.51	+0.7
1,819,909	+		TX73_008415	0.52	+1.3
1,819,931	+		TX73_008415	0.53	+1.3
1,819,970	-		TX73_008415	0.55	+1.0
1,819,999	+		TX73_008415	0.56	+1.2
1,820,005	+		TX73_008415	0.56	+1.2
1,820,008	-		TX73_008415	0.56	+1.2
1,820,031	-		TX73_008415	0.57	+1.0
1,820,034	+		TX73_008415	0.58	-0.1
1,820,042	+		TX73_008415	0.58	+1.2
1,820,078	-		TX73_008415	0.60	+0.9
1,820,091	-		TX73_008415	0.60	+1.4
1,820,098	-		TX73_008415	0.60	+1.2
1,820,103	-		TX73_008415	0.61	+0.7
1,820,103	-		TX73_008415	0.61	+1.5
1,820,117	-		TX73_008415	0.61	+1.3
1,820,130	+		TX73_008415	0.62	+1.2
1,820,130	+		TX73_008415	0.62	+1.2
1,820,130	+		TX73_008415	0.62	+1.3
1,820,130	+		TX73_008415	0.62	+1.2
1,820,130	+		TX73_008415	0.62	+1.0
1,820,130	+		TX73_008415	0.62	+1.1
1,820,130	+		TX73_008415	0.62	+1.5
1,820,130	+		TX73_008415	0.62	+1.5
1,820,130	+		TX73_008415	0.62	+1.5
1,820,130	+		TX73_008415	0.62	+0.8
1,820,130	+		TX73_008415	0.62	+1.1
1,820,130	+		TX73_008415	0.62	+0.6
1,820,130	+		TX73_008415	0.62	+1.3
1,820,130	+		TX73_008415	0.62	+1.2
1,820,130	+		TX73_008415	0.62	+1.1
1,820,130	+		TX73_008415	0.62	+1.2
1,820,130	+		TX73_008415	0.62	+1.1
1,820,130	+		TX73_008415	0.62	+0.8
1,820,132	+		TX73_008415	0.62	+1.5
1,820,132	+		TX73_008415	0.62	+1.0
1,820,138	-		TX73_008415	0.62	+1.3
1,820,138	-		TX73_008415	0.62	+1.1
1,820,138	-		TX73_008415	0.62	+1.1
1,820,138	-		TX73_008415	0.62	+1.1
1,820,138	-		TX73_008415	0.62	+1.5
1,820,138	-		TX73_008415	0.62	+1.3
1,820,138	-		TX73_008415	0.62	+1.0
1,820,138	-		TX73_008415	0.62	+1.2
1,820,138	-		TX73_008415	0.62	+1.4
1,820,138	-		TX73_008415	0.62	+1.6
1,820,138	-		TX73_008415	0.62	+1.1
1,820,138	-		TX73_008415	0.62	+0.8
1,820,138	-		TX73_008415	0.62	+0.9
1,820,138	-		TX73_008415	0.62	+0.7
1,820,179	+		TX73_008415	0.64	+0.9
1,820,202	+		TX73_008415	0.65	+1.3
1,820,261	-		TX73_008415	0.68	+0.9
1,820,263	+		TX73_008415	0.68	+0.9
1,820,271	-		TX73_008415	0.68	+1.3
1,820,278	-		TX73_008415	0.68	+1.4
1,820,293	+		TX73_008415	0.69	+1.6
1,820,345	-		TX73_008415	0.71	+1.2
1,820,422	+		TX73_008415	0.75	+1.1
1,820,422	+		TX73_008415	0.75	+1.2
1,820,466	-		TX73_008415	0.77	+1.0
1,820,467	+		TX73_008415	0.77	+1.1
1,820,475	+		TX73_008415	0.77	+0.9
1,820,521	+		TX73_008415	0.79	+1.2
1,820,523	+		TX73_008415	0.79	+1.2
1,820,553	+		TX73_008415	0.81	+0.9
1,820,553	+		TX73_008415	0.81	+1.0
1,820,553	+		TX73_008415	0.81	+0.9
1,820,553	+		TX73_008415	0.81	+0.4
1,820,571	+		TX73_008415	0.82	+0.5
1,820,572	+		TX73_008415	0.82	+1.0
1,820,579	-		TX73_008415	0.82	+1.1
1,820,581	+		TX73_008415	0.82	+1.4
1,820,593	+		TX73_008415	0.83	+1.3
1,820,601	-		TX73_008415	0.83	+1.3
1,820,633	+		TX73_008415	0.84	+1.4
1,820,681	+		TX73_008415	0.86	+0.8
1,820,686	-		TX73_008415	0.87	+1.2
1,820,694	-		TX73_008415	0.87	+1.0
1,820,714	+		TX73_008415	0.88	+1.0
1,820,714	+		TX73_008415	0.88	+0.7
1,820,722	-		TX73_008415	0.88	+1.0
1,820,732	-		TX73_008415	0.89	+1.1
1,820,751	+		TX73_008415	0.90	+1.2
1,820,752	+		TX73_008415	0.90	+1.1
1,820,760	-				+1.3
1,820,769	-				+0.9
1,820,832	+				+1.2
1,820,832	+				+1.3
1,820,844	-				-0.7
1,820,850	-				-0.4
1,820,864	+				-0.3
1,820,864	+				-0.3
1,820,864	+				+0.2
1,820,867	-				+1.0
1,820,893	+				-0.9
1,820,893	+				+0.1
1,820,896	-				+0.0
1,820,901	-				+0.2
1,820,916	+				+0.6
1,820,916	+				+0.9
1,820,916	+				+0.7
1,820,916	+				-0.1
1,820,916	+				+0.3
1,820,924	-				+0.5
1,820,924	-				-0.7
1,820,924	-				-0.0
1,820,940	+				+1.0
1,820,940	+				+0.3
1,820,952	+				+0.0
1,820,953	-				+0.2
1,820,957	+				+0.2
1,820,957	+				+0.5
1,820,959	-				+0.1
1,820,960	-				-0.1
1,821,012	-				+0.0
1,821,014	+				+0.1
1,821,020	-				-0.0
1,821,072	+				-1.3
1,821,085	+				+0.7
1,821,095	-				+0.1
1,821,105	+				+0.4
1,821,105	+				+0.6
1,821,105	+				-0.1
1,821,113	-				+0.5
1,821,113	-				-0.4
1,821,113	-				+0.1
1,821,186	+				+0.4
1,821,198	-				-1.5
1,821,202	+				+0.2
1,821,202	+				-0.5
1,821,202	+				+0.8
1,821,240	-				+0.0
1,821,245	-				+0.9
1,821,251	+				-1.0
1,821,259	-				-1.1
1,821,259	-				+0.1
1,821,259	-				-0.1
1,821,270	+		TX73_008420	0.10	-1.0
1,821,323	+		TX73_008420	0.14	+0.2
1,821,328	+		TX73_008420	0.15	+0.4
1,821,336	+		TX73_008420	0.16	-0.4
1,821,337	-		TX73_008420	0.16	-0.2
1,821,359	-		TX73_008420	0.17	+0.1
1,821,394	+		TX73_008420	0.20	+0.2
1,821,402	-		TX73_008420	0.21	-0.7
1,821,402	-		TX73_008420	0.21	-0.0
1,821,423	+		TX73_008420	0.22	-0.6
1,821,428	+		TX73_008420	0.23	-0.2
1,821,431	-		TX73_008420	0.23	-0.4
1,821,441	-		TX73_008420	0.24	+0.7
1,821,441	-		TX73_008420	0.24	+0.2
1,821,441	-		TX73_008420	0.24	-0.5
1,821,468	-		TX73_008420	0.26	-0.7
1,821,473	+		TX73_008420	0.27	+0.9
1,821,479	-		TX73_008420	0.27	-0.3
1,821,515	-		TX73_008420	0.30	-0.3
1,821,518	-		TX73_008420	0.30	-0.0
1,821,533	-		TX73_008420	0.31	-0.0
1,821,548	+		TX73_008420	0.33	+0.3
1,821,548	+		TX73_008420	0.33	-0.0
1,821,558	+		TX73_008420	0.33	+0.0
1,821,570	+		TX73_008420	0.34	+0.1
1,821,590	+		TX73_008420	0.36	-0.2
1,821,607	+		TX73_008420	0.37	-0.2
1,821,617	+		TX73_008420	0.38	-0.5
1,821,635	-		TX73_008420	0.40	-0.2
1,821,645	-		TX73_008420	0.40	-0.5
1,821,657	+		TX73_008420	0.41	-0.1
1,821,659	-		TX73_008420	0.41	-0.0
1,821,665	-		TX73_008420	0.42	+0.5
1,821,677	+		TX73_008420	0.43	+0.4
1,821,685	+		TX73_008420	0.44	-0.0
1,821,694	+		TX73_008420	0.44	-0.2
1,821,712	+		TX73_008420	0.46	-0.2
1,821,713	+		TX73_008420	0.46	-0.8
1,821,721	-		TX73_008420	0.46	+0.9
1,821,723	+		TX73_008420	0.47	+0.4
1,821,731	-		TX73_008420	0.47	+0.3
1,821,731	-		TX73_008420	0.47	+0.4
1,821,771	-		TX73_008420	0.50	+0.5
1,821,779	-		TX73_008420	0.51	-1.0
1,821,818	-		TX73_008420	0.54	+0.4
1,821,827	+		TX73_008420	0.55	+0.2
1,821,832	+		TX73_008420	0.55	+0.3
1,821,832	-		TX73_008420	0.55	-0.2
1,821,832	-		TX73_008420	0.55	-0.1
1,821,877	+		TX73_008420	0.59	-0.7
1,821,902	+		TX73_008420	0.61	-1.1
1,821,910	-		TX73_008420	0.62	+0.3
1,821,927	+		TX73_008420	0.63	-0.8
1,821,930	+		TX73_008420	0.63	-0.2