Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002830

Experiment: PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002820 and TX73_002825 overlap by 4 nucleotidesTX73_002825 and TX73_002830 are separated by 94 nucleotidesTX73_002830 and TX73_002835 are separated by 3 nucleotides TX73_002820: TX73_002820 - CidA/LrgA family protein, at 607,334 to 607,717 _002820 TX73_002825: TX73_002825 - LrgB family protein, at 607,714 to 608,436 _002825 TX73_002830: TX73_002830 - hypothetical protein, at 608,531 to 608,995 _002830 TX73_002835: TX73_002835 - phospholipase, at 608,999 to 610,075 _002835 Position (kb) 608 609Strain fitness (log2 ratio) -1 0 1 2at 607.574 kb on - strand, within TX73_002820at 607.580 kb on - strand, within TX73_002820at 607.608 kb on + strand, within TX73_002820at 607.616 kb on - strand, within TX73_002820at 607.635 kb on + strand, within TX73_002820at 607.635 kb on + strand, within TX73_002820at 607.664 kb on + strand, within TX73_002820at 607.665 kb on - strand, within TX73_002820at 607.665 kb on - strand, within TX73_002820at 607.678 kb on - strand, within TX73_002820at 607.702 kb on + strandat 607.739 kb on + strandat 607.739 kb on + strandat 607.739 kb on + strandat 607.740 kb on + strandat 607.741 kb on - strandat 607.747 kb on - strandat 607.757 kb on - strandat 607.772 kb on - strandat 607.781 kb on - strandat 607.783 kb on + strandat 607.783 kb on + strandat 607.783 kb on - strandat 607.788 kb on + strand, within TX73_002825at 607.788 kb on + strand, within TX73_002825at 607.847 kb on - strand, within TX73_002825at 607.866 kb on + strand, within TX73_002825at 607.874 kb on - strand, within TX73_002825at 607.895 kb on + strand, within TX73_002825at 607.906 kb on - strand, within TX73_002825at 607.939 kb on + strand, within TX73_002825at 607.953 kb on + strand, within TX73_002825at 607.994 kb on + strand, within TX73_002825at 608.002 kb on - strand, within TX73_002825at 608.053 kb on - strand, within TX73_002825at 608.068 kb on - strand, within TX73_002825at 608.072 kb on + strand, within TX73_002825at 608.075 kb on - strand, within TX73_002825at 608.075 kb on - strand, within TX73_002825at 608.076 kb on + strand, within TX73_002825at 608.080 kb on - strand, within TX73_002825at 608.094 kb on + strand, within TX73_002825at 608.094 kb on + strand, within TX73_002825at 608.102 kb on - strand, within TX73_002825at 608.102 kb on - strand, within TX73_002825at 608.102 kb on - strand, within TX73_002825at 608.102 kb on - strand, within TX73_002825at 608.179 kb on - strand, within TX73_002825at 608.198 kb on + strand, within TX73_002825at 608.206 kb on - strand, within TX73_002825at 608.227 kb on + strand, within TX73_002825at 608.335 kb on + strand, within TX73_002825at 608.342 kb on - strand, within TX73_002825at 608.343 kb on - strand, within TX73_002825at 608.371 kb on - strandat 608.383 kb on - strandat 608.383 kb on - strandat 608.388 kb on + strandat 608.390 kb on + strandat 608.390 kb on + strandat 608.391 kb on - strandat 608.393 kb on + strandat 608.396 kb on + strandat 608.428 kb on - strandat 608.464 kb on - strandat 608.475 kb on + strandat 608.501 kb on - strandat 608.541 kb on + strandat 608.541 kb on + strandat 608.541 kb on + strandat 608.541 kb on + strandat 608.541 kb on + strandat 608.549 kb on - strandat 608.549 kb on - strandat 608.549 kb on - strandat 608.576 kb on + strandat 608.581 kb on + strand, within TX73_002830at 608.589 kb on - strand, within TX73_002830at 608.589 kb on - strand, within TX73_002830at 608.594 kb on - strand, within TX73_002830at 608.634 kb on - strand, within TX73_002830at 608.648 kb on - strand, within TX73_002830at 608.689 kb on - strand, within TX73_002830at 608.726 kb on + strand, within TX73_002830at 608.728 kb on + strand, within TX73_002830at 608.734 kb on - strand, within TX73_002830at 608.744 kb on - strand, within TX73_002830at 608.746 kb on - strand, within TX73_002830at 608.760 kb on + strand, within TX73_002830at 608.765 kb on + strand, within TX73_002830at 608.768 kb on + strand, within TX73_002830at 608.779 kb on + strand, within TX73_002830at 608.787 kb on - strand, within TX73_002830at 608.787 kb on - strand, within TX73_002830at 608.789 kb on + strand, within TX73_002830at 608.795 kb on + strand, within TX73_002830at 608.803 kb on - strand, within TX73_002830at 608.833 kb on + strand, within TX73_002830at 608.841 kb on - strand, within TX73_002830at 608.876 kb on - strand, within TX73_002830at 608.883 kb on + strand, within TX73_002830at 608.972 kb on + strandat 608.983 kb on + strandat 608.989 kb on + strandat 608.999 kb on - strandat 609.023 kb on + strandat 609.023 kb on + strandat 609.031 kb on - strandat 609.031 kb on - strandat 609.041 kb on + strandat 609.059 kb on - strandat 609.102 kb on + strandat 609.110 kb on - strand, within TX73_002835at 609.115 kb on - strand, within TX73_002835at 609.126 kb on + strand, within TX73_002835at 609.149 kb on + strand, within TX73_002835at 609.163 kb on - strand, within TX73_002835at 609.181 kb on - strand, within TX73_002835at 609.199 kb on - strand, within TX73_002835at 609.234 kb on - strand, within TX73_002835at 609.258 kb on - strand, within TX73_002835at 609.260 kb on + strand, within TX73_002835at 609.268 kb on - strand, within TX73_002835at 609.278 kb on + strand, within TX73_002835at 609.278 kb on + strand, within TX73_002835at 609.285 kb on + strand, within TX73_002835at 609.291 kb on - strand, within TX73_002835at 609.328 kb on + strand, within TX73_002835at 609.368 kb on - strand, within TX73_002835at 609.427 kb on - strand, within TX73_002835at 609.505 kb on + strand, within TX73_002835at 609.542 kb on + strand, within TX73_002835at 609.548 kb on + strand, within TX73_002835at 609.635 kb on + strand, within TX73_002835at 609.635 kb on + strand, within TX73_002835at 609.635 kb on + strand, within TX73_002835at 609.643 kb on - strand, within TX73_002835at 609.775 kb on - strand, within TX73_002835at 609.775 kb on - strand, within TX73_002835at 609.796 kb on - strand, within TX73_002835at 609.809 kb on + strand, within TX73_002835at 609.826 kb on + strand, within TX73_002835at 609.837 kb on + strand, within TX73_002835at 609.844 kb on - strand, within TX73_002835at 609.861 kb on + strand, within TX73_002835at 609.863 kb on + strand, within TX73_002835at 609.868 kb on - strand, within TX73_002835at 609.871 kb on - strand, within TX73_002835at 609.881 kb on - strand, within TX73_002835at 609.883 kb on - strand, within TX73_002835at 609.927 kb on - strand, within TX73_002835at 609.954 kb on + strand, within TX73_002835at 609.962 kb on - strand, within TX73_002835at 609.962 kb on - strand, within TX73_002835at 609.982 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark
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607,574 - TX73_002820 0.62 -0.7
607,580 - TX73_002820 0.64 +0.4
607,608 + TX73_002820 0.71 +0.5
607,616 - TX73_002820 0.73 +1.0
607,635 + TX73_002820 0.78 +1.0
607,635 + TX73_002820 0.78 +0.6
607,664 + TX73_002820 0.86 -0.4
607,665 - TX73_002820 0.86 +1.3
607,665 - TX73_002820 0.86 +0.4
607,678 - TX73_002820 0.90 -0.0
607,702 + +1.4
607,739 + +0.3
607,739 + -0.1
607,739 + +0.1
607,740 + -0.2
607,741 - -0.3
607,747 - -0.4
607,757 - +0.5
607,772 - +0.0
607,781 - +0.9
607,783 + +0.3
607,783 + +0.6
607,783 - +0.0
607,788 + TX73_002825 0.10 +0.4
607,788 + TX73_002825 0.10 +0.4
607,847 - TX73_002825 0.18 +0.1
607,866 + TX73_002825 0.21 -1.0
607,874 - TX73_002825 0.22 +0.4
607,895 + TX73_002825 0.25 +0.4
607,906 - TX73_002825 0.27 +1.1
607,939 + TX73_002825 0.31 +0.3
607,953 + TX73_002825 0.33 +0.4
607,994 + TX73_002825 0.39 -0.0
608,002 - TX73_002825 0.40 -0.5
608,053 - TX73_002825 0.47 +1.2
608,068 - TX73_002825 0.49 +0.7
608,072 + TX73_002825 0.50 -1.2
608,075 - TX73_002825 0.50 +0.1
608,075 - TX73_002825 0.50 -0.4
608,076 + TX73_002825 0.50 -0.8
608,080 - TX73_002825 0.51 +0.4
608,094 + TX73_002825 0.53 +0.6
608,094 + TX73_002825 0.53 +0.2
608,102 - TX73_002825 0.54 +0.0
608,102 - TX73_002825 0.54 -0.2
608,102 - TX73_002825 0.54 -0.3
608,102 - TX73_002825 0.54 -0.7
608,179 - TX73_002825 0.64 -0.5
608,198 + TX73_002825 0.67 -0.3
608,206 - TX73_002825 0.68 -1.1
608,227 + TX73_002825 0.71 +0.1
608,335 + TX73_002825 0.86 -0.3
608,342 - TX73_002825 0.87 -0.4
608,343 - TX73_002825 0.87 +2.6
608,371 - +0.4
608,383 - +0.7
608,383 - -1.1
608,388 + -0.1
608,390 + -0.0
608,390 + +0.7
608,391 - -1.0
608,393 + +0.4
608,396 + +0.1
608,428 - -0.8
608,464 - +0.3
608,475 + -0.4
608,501 - +0.6
608,541 + -0.6
608,541 + +0.1
608,541 + +0.5
608,541 + +0.4
608,541 + -0.6
608,549 - -1.1
608,549 - -0.3
608,549 - -0.3
608,576 + -0.6
608,581 + TX73_002830 0.11 -0.4
608,589 - TX73_002830 0.12 -1.7
608,589 - TX73_002830 0.12 -0.7
608,594 - TX73_002830 0.14 -0.6
608,634 - TX73_002830 0.22 -0.5
608,648 - TX73_002830 0.25 +0.5
608,689 - TX73_002830 0.34 -0.7
608,726 + TX73_002830 0.42 +0.1
608,728 + TX73_002830 0.42 -0.3
608,734 - TX73_002830 0.44 -0.5
608,744 - TX73_002830 0.46 -0.7
608,746 - TX73_002830 0.46 -0.1
608,760 + TX73_002830 0.49 -0.7
608,765 + TX73_002830 0.50 -0.9
608,768 + TX73_002830 0.51 +0.3
608,779 + TX73_002830 0.53 +0.2
608,787 - TX73_002830 0.55 +0.5
608,787 - TX73_002830 0.55 -0.3
608,789 + TX73_002830 0.55 +0.3
608,795 + TX73_002830 0.57 -0.2
608,803 - TX73_002830 0.58 -0.1
608,833 + TX73_002830 0.65 +0.4
608,841 - TX73_002830 0.67 +0.5
608,876 - TX73_002830 0.74 -1.1
608,883 + TX73_002830 0.76 -0.2
608,972 + -0.4
608,983 + +0.2
608,989 + +0.0
608,999 - -0.1
609,023 + +0.5
609,023 + +0.4
609,031 - -0.3
609,031 - -1.1
609,041 + +0.4
609,059 - -0.5
609,102 + +1.0
609,110 - TX73_002835 0.10 -0.2
609,115 - TX73_002835 0.11 +0.7
609,126 + TX73_002835 0.12 -0.1
609,149 + TX73_002835 0.14 -0.0
609,163 - TX73_002835 0.15 -0.6
609,181 - TX73_002835 0.17 +0.6
609,199 - TX73_002835 0.19 +0.5
609,234 - TX73_002835 0.22 -0.6
609,258 - TX73_002835 0.24 +0.1
609,260 + TX73_002835 0.24 -0.1
609,268 - TX73_002835 0.25 +0.5
609,278 + TX73_002835 0.26 -0.1
609,278 + TX73_002835 0.26 +1.1
609,285 + TX73_002835 0.27 -0.1
609,291 - TX73_002835 0.27 +0.3
609,328 + TX73_002835 0.31 +0.6
609,368 - TX73_002835 0.34 -1.0
609,427 - TX73_002835 0.40 -0.6
609,505 + TX73_002835 0.47 +0.6
609,542 + TX73_002835 0.50 +0.7
609,548 + TX73_002835 0.51 +0.2
609,635 + TX73_002835 0.59 -0.6
609,635 + TX73_002835 0.59 +0.3
609,635 + TX73_002835 0.59 +0.3
609,643 - TX73_002835 0.60 +0.1
609,775 - TX73_002835 0.72 +0.5
609,775 - TX73_002835 0.72 +0.3
609,796 - TX73_002835 0.74 +0.2
609,809 + TX73_002835 0.75 -0.1
609,826 + TX73_002835 0.77 -0.7
609,837 + TX73_002835 0.78 +0.1
609,844 - TX73_002835 0.78 -0.4
609,861 + TX73_002835 0.80 +0.1
609,863 + TX73_002835 0.80 -0.3
609,868 - TX73_002835 0.81 +0.1
609,871 - TX73_002835 0.81 -0.0
609,881 - TX73_002835 0.82 -0.2
609,883 - TX73_002835 0.82 +0.1
609,927 - TX73_002835 0.86 +0.0
609,954 + TX73_002835 0.89 +0.6
609,962 - TX73_002835 0.89 +1.3
609,962 - TX73_002835 0.89 -0.0
609,982 + -0.9

Or see this region's nucleotide sequence