Experiment: PM_argon75_N2O25 with buyrate and 0.1 mM nitrate; in dark
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_023355 and TX73_023360 overlap by 1 nucleotides TX73_023360 and TX73_023365 are separated by 394 nucleotides TX73_023365 and TX73_023370 are separated by 36 nucleotides TX73_023370 and TX73_023375 are separated by 133 nucleotides
TX73_023355: TX73_023355 - hypothetical protein, at 5,078,464 to 5,079,114
_023355
TX73_023360: TX73_023360 - RusA family crossover junction endodeoxyribonuclease, at 5,079,114 to 5,079,527
_023360
TX73_023365: TX73_023365 - hypothetical protein, at 5,079,922 to 5,080,098
_023365
TX73_023370: TX73_023370 - alkylphosphonate utilization protein, at 5,080,135 to 5,080,353
_023370
TX73_023375: TX73_023375 - OmpW family protein, at 5,080,487 to 5,081,176
_023375
Position (kb) 5079
5080
5081 Strain fitness (log2 ratio) -2
-1
0
1 at 5078.981 kb on - strand, within TX73_023355 at 5078.988 kb on + strand, within TX73_023355 at 5078.996 kb on - strand, within TX73_023355 at 5078.996 kb on - strand, within TX73_023355 at 5079.024 kb on - strand, within TX73_023355 at 5079.034 kb on + strand, within TX73_023355 at 5079.042 kb on - strand, within TX73_023355 at 5079.042 kb on - strand, within TX73_023355 at 5079.057 kb on + strand at 5079.125 kb on - strand at 5079.154 kb on - strand at 5079.186 kb on + strand, within TX73_023360 at 5079.192 kb on - strand, within TX73_023360 at 5079.220 kb on - strand, within TX73_023360 at 5079.237 kb on + strand, within TX73_023360 at 5079.282 kb on - strand, within TX73_023360 at 5079.295 kb on - strand, within TX73_023360 at 5079.307 kb on + strand, within TX73_023360 at 5079.307 kb on + strand, within TX73_023360 at 5079.355 kb on - strand, within TX73_023360 at 5079.355 kb on - strand, within TX73_023360 at 5079.355 kb on - strand, within TX73_023360 at 5079.360 kb on - strand, within TX73_023360 at 5079.362 kb on - strand, within TX73_023360 at 5079.364 kb on + strand, within TX73_023360 at 5079.372 kb on - strand, within TX73_023360 at 5079.522 kb on + strand at 5079.538 kb on + strand at 5079.540 kb on + strand at 5079.548 kb on - strand at 5079.578 kb on + strand at 5079.586 kb on - strand at 5079.619 kb on - strand at 5079.637 kb on + strand at 5079.745 kb on + strand at 5079.753 kb on - strand at 5079.753 kb on - strand at 5079.753 kb on - strand at 5079.753 kb on - strand at 5079.753 kb on - strand at 5079.789 kb on - strand at 5079.789 kb on - strand at 5079.914 kb on - strand at 5079.917 kb on + strand at 5080.030 kb on + strand, within TX73_023365 at 5080.030 kb on + strand, within TX73_023365 at 5080.038 kb on - strand, within TX73_023365 at 5080.038 kb on - strand, within TX73_023365 at 5080.049 kb on - strand, within TX73_023365 at 5080.056 kb on + strand, within TX73_023365 at 5080.056 kb on + strand, within TX73_023365 at 5080.071 kb on - strand, within TX73_023365 at 5080.081 kb on - strand at 5080.092 kb on + strand at 5080.114 kb on + strand at 5080.114 kb on + strand at 5080.122 kb on - strand at 5080.122 kb on - strand at 5080.164 kb on + strand, within TX73_023370 at 5080.172 kb on + strand, within TX73_023370 at 5080.172 kb on + strand, within TX73_023370 at 5080.257 kb on - strand, within TX73_023370 at 5080.274 kb on + strand, within TX73_023370 at 5080.285 kb on + strand, within TX73_023370 at 5080.403 kb on + strand at 5080.408 kb on + strand at 5080.452 kb on + strand at 5080.457 kb on + strand at 5080.457 kb on + strand at 5080.465 kb on - strand at 5080.493 kb on - strand at 5080.508 kb on - strand at 5080.621 kb on - strand, within TX73_023375 at 5080.625 kb on + strand, within TX73_023375 at 5080.628 kb on - strand, within TX73_023375 at 5080.642 kb on + strand, within TX73_023375 at 5080.677 kb on + strand, within TX73_023375 at 5080.677 kb on + strand, within TX73_023375 at 5080.685 kb on - strand, within TX73_023375 at 5080.685 kb on - strand, within TX73_023375 at 5080.707 kb on - strand, within TX73_023375 at 5080.714 kb on + strand, within TX73_023375 at 5080.722 kb on - strand, within TX73_023375 at 5080.734 kb on + strand, within TX73_023375 at 5080.739 kb on + strand, within TX73_023375 at 5080.739 kb on + strand, within TX73_023375 at 5080.785 kb on + strand, within TX73_023375 at 5080.793 kb on - strand, within TX73_023375 at 5080.800 kb on + strand, within TX73_023375 at 5080.806 kb on - strand, within TX73_023375 at 5080.817 kb on + strand, within TX73_023375 at 5080.818 kb on + strand, within TX73_023375 at 5080.824 kb on + strand, within TX73_023375 at 5080.824 kb on + strand, within TX73_023375 at 5080.826 kb on - strand, within TX73_023375 at 5080.827 kb on - strand, within TX73_023375 at 5080.834 kb on + strand, within TX73_023375 at 5080.867 kb on - strand, within TX73_023375 at 5080.871 kb on + strand, within TX73_023375 at 5080.884 kb on - strand, within TX73_023375 at 5080.914 kb on + strand, within TX73_023375 at 5080.927 kb on - strand, within TX73_023375 at 5080.945 kb on - strand, within TX73_023375 at 5080.959 kb on - strand, within TX73_023375 at 5080.984 kb on + strand, within TX73_023375 at 5080.989 kb on + strand, within TX73_023375 at 5080.992 kb on - strand, within TX73_023375 at 5080.992 kb on - strand, within TX73_023375 at 5080.992 kb on - strand, within TX73_023375 at 5081.010 kb on + strand, within TX73_023375 at 5081.010 kb on + strand, within TX73_023375 at 5081.018 kb on - strand, within TX73_023375 at 5081.077 kb on - strand, within TX73_023375 at 5081.077 kb on - strand, within TX73_023375 at 5081.083 kb on - strand, within TX73_023375
Per-strain Table
Position Strand Gene LocusTag Fraction PM_argon75_N2O25 with buyrate and 0.1 mM nitrate; in dark remove 5,078,981 - TX73_023355 0.79 -0.6 5,078,988 + TX73_023355 0.80 -1.5 5,078,996 - TX73_023355 0.82 +0.1 5,078,996 - TX73_023355 0.82 +0.5 5,079,024 - TX73_023355 0.86 -0.2 5,079,034 + TX73_023355 0.88 -1.8 5,079,042 - TX73_023355 0.89 -1.7 5,079,042 - TX73_023355 0.89 -0.5 5,079,057 + +0.4 5,079,125 - -0.3 5,079,154 - +0.2 5,079,186 + TX73_023360 0.17 +1.4 5,079,192 - TX73_023360 0.19 -0.8 5,079,220 - TX73_023360 0.26 +0.3 5,079,237 + TX73_023360 0.30 +0.1 5,079,282 - TX73_023360 0.41 -1.5 5,079,295 - TX73_023360 0.44 +0.6 5,079,307 + TX73_023360 0.47 +0.4 5,079,307 + TX73_023360 0.47 -0.9 5,079,355 - TX73_023360 0.58 -0.2 5,079,355 - TX73_023360 0.58 +0.6 5,079,355 - TX73_023360 0.58 -0.1 5,079,360 - TX73_023360 0.59 +0.2 5,079,362 - TX73_023360 0.60 +0.5 5,079,364 + TX73_023360 0.60 +0.1 5,079,372 - TX73_023360 0.62 -0.2 5,079,522 + +0.4 5,079,538 + +0.2 5,079,540 + +0.5 5,079,548 - -0.1 5,079,578 + +0.2 5,079,586 - -0.2 5,079,619 - -0.8 5,079,637 + +0.1 5,079,745 + -0.6 5,079,753 - -0.1 5,079,753 - -0.5 5,079,753 - +0.1 5,079,753 - -0.1 5,079,753 - -0.3 5,079,789 - +1.4 5,079,789 - -1.3 5,079,914 - +0.3 5,079,917 + -0.1 5,080,030 + TX73_023365 0.61 -0.4 5,080,030 + TX73_023365 0.61 +0.2 5,080,038 - TX73_023365 0.66 -2.2 5,080,038 - TX73_023365 0.66 -1.3 5,080,049 - TX73_023365 0.72 -0.2 5,080,056 + TX73_023365 0.76 -1.1 5,080,056 + TX73_023365 0.76 -0.2 5,080,071 - TX73_023365 0.84 -0.5 5,080,081 - -0.3 5,080,092 + +1.5 5,080,114 + -1.5 5,080,114 + +0.1 5,080,122 - +0.3 5,080,122 - +0.0 5,080,164 + TX73_023370 0.13 +0.4 5,080,172 + TX73_023370 0.17 +0.7 5,080,172 + TX73_023370 0.17 +0.3 5,080,257 - TX73_023370 0.56 +0.3 5,080,274 + TX73_023370 0.63 +0.3 5,080,285 + TX73_023370 0.68 -0.2 5,080,403 + +0.4 5,080,408 + +0.3 5,080,452 + +0.2 5,080,457 + -0.2 5,080,457 + +1.4 5,080,465 - -0.5 5,080,493 - +0.2 5,080,508 - -0.7 5,080,621 - TX73_023375 0.19 +0.8 5,080,625 + TX73_023375 0.20 -0.3 5,080,628 - TX73_023375 0.20 -0.4 5,080,642 + TX73_023375 0.22 +0.2 5,080,677 + TX73_023375 0.28 +0.1 5,080,677 + TX73_023375 0.28 -0.1 5,080,685 - TX73_023375 0.29 -0.5 5,080,685 - TX73_023375 0.29 +0.3 5,080,707 - TX73_023375 0.32 -0.9 5,080,714 + TX73_023375 0.33 -1.0 5,080,722 - TX73_023375 0.34 -0.0 5,080,734 + TX73_023375 0.36 +0.4 5,080,739 + TX73_023375 0.37 +0.7 5,080,739 + TX73_023375 0.37 -0.7 5,080,785 + TX73_023375 0.43 -0.6 5,080,793 - TX73_023375 0.44 -0.1 5,080,800 + TX73_023375 0.45 -0.4 5,080,806 - TX73_023375 0.46 -0.1 5,080,817 + TX73_023375 0.48 +0.8 5,080,818 + TX73_023375 0.48 -0.6 5,080,824 + TX73_023375 0.49 -0.3 5,080,824 + TX73_023375 0.49 +0.5 5,080,826 - TX73_023375 0.49 -0.6 5,080,827 - TX73_023375 0.49 +0.3 5,080,834 + TX73_023375 0.50 -0.1 5,080,867 - TX73_023375 0.55 +0.2 5,080,871 + TX73_023375 0.56 -0.5 5,080,884 - TX73_023375 0.58 +1.2 5,080,914 + TX73_023375 0.62 +0.9 5,080,927 - TX73_023375 0.64 -0.2 5,080,945 - TX73_023375 0.66 -0.3 5,080,959 - TX73_023375 0.68 -0.0 5,080,984 + TX73_023375 0.72 +0.3 5,080,989 + TX73_023375 0.73 -1.2 5,080,992 - TX73_023375 0.73 +0.1 5,080,992 - TX73_023375 0.73 +0.2 5,080,992 - TX73_023375 0.73 +0.4 5,081,010 + TX73_023375 0.76 -0.1 5,081,010 + TX73_023375 0.76 +0.9 5,081,018 - TX73_023375 0.77 -0.2 5,081,077 - TX73_023375 0.86 -0.2 5,081,077 - TX73_023375 0.86 -0.9 5,081,083 - TX73_023375 0.86 -0.1
Or see this region's nucleotide sequence