Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_019840

Experiment: PM_argon75_N2O25 with buyrate and 0.1 mM nitrate; in dark

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_019830 and TX73_019835 are separated by 60 nucleotidesTX73_019835 and TX73_019840 are separated by 24 nucleotidesTX73_019840 and TX73_019845 are separated by 94 nucleotides TX73_019830: TX73_019830 - transcription elongation factor GreA, at 4,323,709 to 4,324,191 _019830 TX73_019835: TX73_019835 - mismatch-specific DNA-glycosylase, at 4,324,252 to 4,324,761 _019835 TX73_019840: TX73_019840 - DUF2147 domain-containing protein, at 4,324,786 to 4,325,187 _019840 TX73_019845: TX73_019845 - diguanylate cyclase, at 4,325,282 to 4,326,274 _019845 Position (kb) 4324 4325 4326Strain fitness (log2 ratio) -2 -1 0 1at 4323.810 kb on - strand, within TX73_019830at 4323.820 kb on + strand, within TX73_019830at 4323.829 kb on + strand, within TX73_019830at 4323.833 kb on - strand, within TX73_019830at 4323.837 kb on - strand, within TX73_019830at 4323.857 kb on + strand, within TX73_019830at 4323.863 kb on + strand, within TX73_019830at 4323.865 kb on - strand, within TX73_019830at 4323.865 kb on - strand, within TX73_019830at 4323.894 kb on - strand, within TX73_019830at 4323.935 kb on - strand, within TX73_019830at 4323.947 kb on - strand, within TX73_019830at 4323.960 kb on - strand, within TX73_019830at 4323.993 kb on + strand, within TX73_019830at 4324.043 kb on + strand, within TX73_019830at 4324.049 kb on + strand, within TX73_019830at 4324.049 kb on + strand, within TX73_019830at 4324.129 kb on + strand, within TX73_019830at 4324.135 kb on - strand, within TX73_019830at 4324.150 kb on - strandat 4324.160 kb on + strandat 4324.163 kb on + strandat 4324.165 kb on + strandat 4324.167 kb on - strandat 4324.177 kb on - strandat 4324.200 kb on + strandat 4324.241 kb on - strandat 4324.259 kb on + strandat 4324.278 kb on + strandat 4324.278 kb on + strandat 4324.371 kb on + strand, within TX73_019835at 4324.371 kb on + strand, within TX73_019835at 4324.379 kb on - strand, within TX73_019835at 4324.379 kb on - strand, within TX73_019835at 4324.386 kb on + strand, within TX73_019835at 4324.389 kb on - strand, within TX73_019835at 4324.427 kb on - strand, within TX73_019835at 4324.458 kb on + strand, within TX73_019835at 4324.458 kb on + strand, within TX73_019835at 4324.465 kb on - strand, within TX73_019835at 4324.477 kb on - strand, within TX73_019835at 4324.479 kb on - strand, within TX73_019835at 4324.529 kb on + strand, within TX73_019835at 4324.529 kb on + strand, within TX73_019835at 4324.529 kb on + strand, within TX73_019835at 4324.529 kb on + strand, within TX73_019835at 4324.529 kb on + strand, within TX73_019835at 4324.529 kb on + strand, within TX73_019835at 4324.537 kb on - strand, within TX73_019835at 4324.537 kb on - strand, within TX73_019835at 4324.537 kb on - strand, within TX73_019835at 4324.537 kb on - strand, within TX73_019835at 4324.569 kb on - strand, within TX73_019835at 4324.577 kb on + strand, within TX73_019835at 4324.601 kb on - strand, within TX73_019835at 4324.618 kb on + strand, within TX73_019835at 4324.628 kb on + strand, within TX73_019835at 4324.628 kb on + strand, within TX73_019835at 4324.636 kb on - strand, within TX73_019835at 4324.638 kb on - strand, within TX73_019835at 4324.650 kb on + strand, within TX73_019835at 4324.653 kb on + strand, within TX73_019835at 4324.663 kb on - strand, within TX73_019835at 4324.678 kb on - strand, within TX73_019835at 4324.702 kb on + strand, within TX73_019835at 4324.702 kb on + strand, within TX73_019835at 4324.712 kb on - strandat 4324.717 kb on - strandat 4324.720 kb on + strandat 4324.725 kb on + strandat 4324.759 kb on + strandat 4324.763 kb on - strandat 4324.777 kb on + strandat 4324.779 kb on + strandat 4324.785 kb on - strandat 4324.787 kb on - strandat 4324.787 kb on - strandat 4324.795 kb on - strandat 4324.821 kb on - strandat 4324.835 kb on + strand, within TX73_019840at 4324.835 kb on + strand, within TX73_019840at 4324.835 kb on + strand, within TX73_019840at 4324.840 kb on + strand, within TX73_019840at 4324.840 kb on + strand, within TX73_019840at 4324.840 kb on + strand, within TX73_019840at 4324.840 kb on + strand, within TX73_019840at 4324.848 kb on - strand, within TX73_019840at 4324.848 kb on - strand, within TX73_019840at 4324.848 kb on - strand, within TX73_019840at 4324.848 kb on - strand, within TX73_019840at 4324.848 kb on - strand, within TX73_019840at 4324.848 kb on - strand, within TX73_019840at 4324.848 kb on - strand, within TX73_019840at 4324.882 kb on + strand, within TX73_019840at 4324.883 kb on + strand, within TX73_019840at 4324.883 kb on + strand, within TX73_019840at 4324.888 kb on + strand, within TX73_019840at 4324.891 kb on - strand, within TX73_019840at 4324.904 kb on + strand, within TX73_019840at 4324.906 kb on + strand, within TX73_019840at 4324.937 kb on - strand, within TX73_019840at 4324.937 kb on - strand, within TX73_019840at 4324.952 kb on - strand, within TX73_019840at 4325.006 kb on - strand, within TX73_019840at 4325.011 kb on - strand, within TX73_019840at 4325.011 kb on - strand, within TX73_019840at 4325.015 kb on + strand, within TX73_019840at 4325.018 kb on - strand, within TX73_019840at 4325.023 kb on - strand, within TX73_019840at 4325.053 kb on - strand, within TX73_019840at 4325.053 kb on - strand, within TX73_019840at 4325.053 kb on - strand, within TX73_019840at 4325.061 kb on + strand, within TX73_019840at 4325.119 kb on - strand, within TX73_019840at 4325.138 kb on + strand, within TX73_019840at 4325.138 kb on + strand, within TX73_019840at 4325.142 kb on + strand, within TX73_019840at 4325.153 kb on - strandat 4325.170 kb on + strandat 4325.178 kb on - strandat 4325.179 kb on - strandat 4325.250 kb on - strandat 4325.298 kb on + strandat 4325.334 kb on + strandat 4325.342 kb on - strandat 4325.342 kb on - strandat 4325.363 kb on - strandat 4325.363 kb on - strandat 4325.363 kb on - strandat 4325.365 kb on - strandat 4325.406 kb on - strand, within TX73_019845at 4325.420 kb on + strand, within TX73_019845at 4325.429 kb on - strand, within TX73_019845at 4325.431 kb on - strand, within TX73_019845at 4325.433 kb on - strand, within TX73_019845at 4325.455 kb on + strand, within TX73_019845at 4325.463 kb on - strand, within TX73_019845at 4325.463 kb on - strand, within TX73_019845at 4325.485 kb on + strand, within TX73_019845at 4325.493 kb on - strand, within TX73_019845at 4325.518 kb on - strand, within TX73_019845at 4325.520 kb on + strand, within TX73_019845at 4325.530 kb on - strand, within TX73_019845at 4325.620 kb on - strand, within TX73_019845at 4325.628 kb on - strand, within TX73_019845at 4325.635 kb on + strand, within TX73_019845at 4325.641 kb on - strand, within TX73_019845at 4325.644 kb on - strand, within TX73_019845at 4325.661 kb on + strand, within TX73_019845at 4325.661 kb on + strand, within TX73_019845at 4325.661 kb on + strand, within TX73_019845at 4325.661 kb on + strand, within TX73_019845at 4325.661 kb on + strand, within TX73_019845at 4325.669 kb on - strand, within TX73_019845at 4325.669 kb on - strand, within TX73_019845at 4325.669 kb on - strand, within TX73_019845at 4325.669 kb on - strand, within TX73_019845at 4325.676 kb on + strand, within TX73_019845at 4325.686 kb on - strand, within TX73_019845at 4325.703 kb on + strand, within TX73_019845at 4325.711 kb on + strand, within TX73_019845at 4325.732 kb on - strand, within TX73_019845at 4325.735 kb on + strand, within TX73_019845at 4325.804 kb on - strand, within TX73_019845at 4325.805 kb on + strand, within TX73_019845at 4325.876 kb on - strand, within TX73_019845at 4325.940 kb on + strand, within TX73_019845at 4325.989 kb on - strand, within TX73_019845at 4325.989 kb on - strand, within TX73_019845at 4326.038 kb on + strand, within TX73_019845at 4326.060 kb on + strand, within TX73_019845at 4326.070 kb on + strand, within TX73_019845at 4326.072 kb on + strand, within TX73_019845at 4326.085 kb on + strand, within TX73_019845

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Per-strain Table

Position Strand Gene LocusTag Fraction PM_argon75_N2O25 with buyrate and 0.1 mM nitrate; in dark
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4,323,810 - TX73_019830 0.21 -0.0
4,323,820 + TX73_019830 0.23 +0.8
4,323,829 + TX73_019830 0.25 +0.0
4,323,833 - TX73_019830 0.26 +0.2
4,323,837 - TX73_019830 0.27 +0.1
4,323,857 + TX73_019830 0.31 -0.1
4,323,863 + TX73_019830 0.32 -0.7
4,323,865 - TX73_019830 0.32 -0.3
4,323,865 - TX73_019830 0.32 -0.5
4,323,894 - TX73_019830 0.38 +0.3
4,323,935 - TX73_019830 0.47 +0.4
4,323,947 - TX73_019830 0.49 +0.1
4,323,960 - TX73_019830 0.52 +0.7
4,323,993 + TX73_019830 0.59 -0.2
4,324,043 + TX73_019830 0.69 +0.1
4,324,049 + TX73_019830 0.70 +0.5
4,324,049 + TX73_019830 0.70 +0.1
4,324,129 + TX73_019830 0.87 +0.2
4,324,135 - TX73_019830 0.88 +0.3
4,324,150 - +0.6
4,324,160 + -0.3
4,324,163 + +0.0
4,324,165 + -0.4
4,324,167 - +0.0
4,324,177 - -1.2
4,324,200 + +0.2
4,324,241 - -0.4
4,324,259 + +0.0
4,324,278 + +0.3
4,324,278 + -0.6
4,324,371 + TX73_019835 0.23 -0.1
4,324,371 + TX73_019835 0.23 +0.6
4,324,379 - TX73_019835 0.25 -1.1
4,324,379 - TX73_019835 0.25 +0.2
4,324,386 + TX73_019835 0.26 +0.6
4,324,389 - TX73_019835 0.27 +0.2
4,324,427 - TX73_019835 0.34 +0.0
4,324,458 + TX73_019835 0.40 +0.5
4,324,458 + TX73_019835 0.40 -1.1
4,324,465 - TX73_019835 0.42 -0.8
4,324,477 - TX73_019835 0.44 -0.0
4,324,479 - TX73_019835 0.45 +0.1
4,324,529 + TX73_019835 0.54 +1.1
4,324,529 + TX73_019835 0.54 -0.4
4,324,529 + TX73_019835 0.54 +0.3
4,324,529 + TX73_019835 0.54 -0.6
4,324,529 + TX73_019835 0.54 -0.3
4,324,529 + TX73_019835 0.54 -1.9
4,324,537 - TX73_019835 0.56 +0.1
4,324,537 - TX73_019835 0.56 -0.3
4,324,537 - TX73_019835 0.56 +0.2
4,324,537 - TX73_019835 0.56 -1.4
4,324,569 - TX73_019835 0.62 +0.2
4,324,577 + TX73_019835 0.64 +0.0
4,324,601 - TX73_019835 0.68 -0.6
4,324,618 + TX73_019835 0.72 -0.6
4,324,628 + TX73_019835 0.74 -0.9
4,324,628 + TX73_019835 0.74 -0.7
4,324,636 - TX73_019835 0.75 +0.1
4,324,638 - TX73_019835 0.76 +0.1
4,324,650 + TX73_019835 0.78 +0.6
4,324,653 + TX73_019835 0.79 +0.0
4,324,663 - TX73_019835 0.81 -0.0
4,324,678 - TX73_019835 0.84 +0.4
4,324,702 + TX73_019835 0.88 +0.0
4,324,702 + TX73_019835 0.88 +0.3
4,324,712 - +0.6
4,324,717 - -0.2
4,324,720 + -0.5
4,324,725 + +0.3
4,324,759 + -0.3
4,324,763 - -0.2
4,324,777 + -0.4
4,324,779 + -0.3
4,324,785 - +0.1
4,324,787 - +0.2
4,324,787 - +0.2
4,324,795 - +0.0
4,324,821 - -0.1
4,324,835 + TX73_019840 0.12 -0.0
4,324,835 + TX73_019840 0.12 -0.7
4,324,835 + TX73_019840 0.12 +0.3
4,324,840 + TX73_019840 0.13 +0.5
4,324,840 + TX73_019840 0.13 -0.9
4,324,840 + TX73_019840 0.13 -0.1
4,324,840 + TX73_019840 0.13 +0.1
4,324,848 - TX73_019840 0.15 -0.5
4,324,848 - TX73_019840 0.15 +0.4
4,324,848 - TX73_019840 0.15 -0.1
4,324,848 - TX73_019840 0.15 -0.4
4,324,848 - TX73_019840 0.15 +0.6
4,324,848 - TX73_019840 0.15 +0.3
4,324,848 - TX73_019840 0.15 -0.3
4,324,882 + TX73_019840 0.24 -0.1
4,324,883 + TX73_019840 0.24 -0.3
4,324,883 + TX73_019840 0.24 -0.0
4,324,888 + TX73_019840 0.25 -0.8
4,324,891 - TX73_019840 0.26 -0.2
4,324,904 + TX73_019840 0.29 -0.4
4,324,906 + TX73_019840 0.30 -0.1
4,324,937 - TX73_019840 0.38 -0.4
4,324,937 - TX73_019840 0.38 -0.0
4,324,952 - TX73_019840 0.41 -0.2
4,325,006 - TX73_019840 0.55 -0.5
4,325,011 - TX73_019840 0.56 -0.2
4,325,011 - TX73_019840 0.56 +0.4
4,325,015 + TX73_019840 0.57 -0.2
4,325,018 - TX73_019840 0.58 -0.4
4,325,023 - TX73_019840 0.59 -0.1
4,325,053 - TX73_019840 0.66 -0.2
4,325,053 - TX73_019840 0.66 -0.1
4,325,053 - TX73_019840 0.66 -0.4
4,325,061 + TX73_019840 0.68 +0.5
4,325,119 - TX73_019840 0.83 +0.1
4,325,138 + TX73_019840 0.88 -0.5
4,325,138 + TX73_019840 0.88 -0.5
4,325,142 + TX73_019840 0.89 +0.3
4,325,153 - +0.3
4,325,170 + +0.1
4,325,178 - -0.0
4,325,179 - +0.0
4,325,250 - +0.4
4,325,298 + +0.0
4,325,334 + +0.0
4,325,342 - -0.3
4,325,342 - +0.1
4,325,363 - -0.0
4,325,363 - -0.4
4,325,363 - +0.7
4,325,365 - -0.2
4,325,406 - TX73_019845 0.12 +0.9
4,325,420 + TX73_019845 0.14 +0.0
4,325,429 - TX73_019845 0.15 +0.3
4,325,431 - TX73_019845 0.15 +0.7
4,325,433 - TX73_019845 0.15 -0.2
4,325,455 + TX73_019845 0.17 +0.5
4,325,463 - TX73_019845 0.18 -0.1
4,325,463 - TX73_019845 0.18 +0.1
4,325,485 + TX73_019845 0.20 +0.7
4,325,493 - TX73_019845 0.21 +0.2
4,325,518 - TX73_019845 0.24 +0.3
4,325,520 + TX73_019845 0.24 +0.2
4,325,530 - TX73_019845 0.25 -0.1
4,325,620 - TX73_019845 0.34 +0.2
4,325,628 - TX73_019845 0.35 -0.1
4,325,635 + TX73_019845 0.36 -0.5
4,325,641 - TX73_019845 0.36 -0.2
4,325,644 - TX73_019845 0.36 +0.7
4,325,661 + TX73_019845 0.38 +0.3
4,325,661 + TX73_019845 0.38 +0.2
4,325,661 + TX73_019845 0.38 +0.0
4,325,661 + TX73_019845 0.38 -0.1
4,325,661 + TX73_019845 0.38 -0.2
4,325,669 - TX73_019845 0.39 +0.4
4,325,669 - TX73_019845 0.39 +0.2
4,325,669 - TX73_019845 0.39 -0.0
4,325,669 - TX73_019845 0.39 -0.1
4,325,676 + TX73_019845 0.40 +0.9
4,325,686 - TX73_019845 0.41 +0.2
4,325,703 + TX73_019845 0.42 -0.2
4,325,711 + TX73_019845 0.43 -0.2
4,325,732 - TX73_019845 0.45 +0.4
4,325,735 + TX73_019845 0.46 +0.0
4,325,804 - TX73_019845 0.53 -0.8
4,325,805 + TX73_019845 0.53 +0.3
4,325,876 - TX73_019845 0.60 -0.0
4,325,940 + TX73_019845 0.66 -0.7
4,325,989 - TX73_019845 0.71 +0.8
4,325,989 - TX73_019845 0.71 -0.0
4,326,038 + TX73_019845 0.76 -0.2
4,326,060 + TX73_019845 0.78 +0.0
4,326,070 + TX73_019845 0.79 +0.1
4,326,072 + TX73_019845 0.80 +0.2
4,326,085 + TX73_019845 0.81 -0.0

Or see this region's nucleotide sequence