Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002500

Experiment: PM_argon75_N2O25 with buyrate and 0.1 mM nitrate; in dark

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002495 and TX73_002500 are separated by 33 nucleotidesTX73_002500 and TX73_002505 are separated by 144 nucleotidesTX73_002505 and TX73_002510 are separated by 2 nucleotides TX73_002495: TX73_002495 - acyl-CoA dehydrogenase family protein, at 531,481 to 532,641 _002495 TX73_002500: TX73_002500 - enoyl-CoA hydratase/isomerase family protein, at 532,675 to 533,481 _002500 TX73_002505: TX73_002505 - hypothetical protein, at 533,626 to 534,390 _002505 TX73_002510: TX73_002510 - enoyl-CoA hydratase, at 534,393 to 535,181 _002510 Position (kb) 532 533 534Strain fitness (log2 ratio) -1 0 1at 531.712 kb on - strand, within TX73_002495at 531.712 kb on - strand, within TX73_002495at 531.781 kb on + strand, within TX73_002495at 531.801 kb on + strand, within TX73_002495at 531.822 kb on - strand, within TX73_002495at 531.830 kb on - strand, within TX73_002495at 531.884 kb on - strand, within TX73_002495at 531.899 kb on + strand, within TX73_002495at 531.899 kb on + strand, within TX73_002495at 531.929 kb on - strand, within TX73_002495at 531.930 kb on + strand, within TX73_002495at 531.977 kb on - strand, within TX73_002495at 531.977 kb on - strand, within TX73_002495at 531.980 kb on + strand, within TX73_002495at 532.014 kb on + strand, within TX73_002495at 532.022 kb on - strand, within TX73_002495at 532.055 kb on + strand, within TX73_002495at 532.055 kb on + strand, within TX73_002495at 532.076 kb on + strand, within TX73_002495at 532.143 kb on + strand, within TX73_002495at 532.217 kb on + strand, within TX73_002495at 532.266 kb on + strand, within TX73_002495at 532.276 kb on - strand, within TX73_002495at 532.281 kb on - strand, within TX73_002495at 532.282 kb on + strand, within TX73_002495at 532.301 kb on + strand, within TX73_002495at 532.332 kb on - strand, within TX73_002495at 532.353 kb on + strand, within TX73_002495at 532.353 kb on + strand, within TX73_002495at 532.353 kb on + strand, within TX73_002495at 532.353 kb on + strand, within TX73_002495at 532.353 kb on + strand, within TX73_002495at 532.361 kb on + strand, within TX73_002495at 532.361 kb on - strand, within TX73_002495at 532.361 kb on - strand, within TX73_002495at 532.361 kb on - strand, within TX73_002495at 532.361 kb on - strand, within TX73_002495at 532.455 kb on - strand, within TX73_002495at 532.553 kb on + strandat 532.572 kb on + strandat 532.595 kb on + strandat 532.595 kb on + strandat 532.603 kb on - strandat 532.625 kb on + strandat 532.635 kb on + strandat 532.701 kb on + strandat 532.762 kb on - strand, within TX73_002500at 532.848 kb on - strand, within TX73_002500at 532.853 kb on - strand, within TX73_002500at 532.908 kb on - strand, within TX73_002500at 532.951 kb on + strand, within TX73_002500at 532.956 kb on + strand, within TX73_002500at 532.967 kb on - strand, within TX73_002500at 532.969 kb on + strand, within TX73_002500at 533.047 kb on - strand, within TX73_002500at 533.066 kb on - strand, within TX73_002500at 533.141 kb on - strand, within TX73_002500at 533.181 kb on + strand, within TX73_002500at 533.181 kb on + strand, within TX73_002500at 533.181 kb on + strand, within TX73_002500at 533.189 kb on - strand, within TX73_002500at 533.235 kb on - strand, within TX73_002500at 533.252 kb on + strand, within TX73_002500at 533.272 kb on + strand, within TX73_002500at 533.272 kb on + strand, within TX73_002500at 533.282 kb on - strand, within TX73_002500at 533.315 kb on + strand, within TX73_002500at 533.315 kb on + strand, within TX73_002500at 533.315 kb on + strand, within TX73_002500at 533.323 kb on - strand, within TX73_002500at 533.369 kb on + strand, within TX73_002500at 533.392 kb on + strand, within TX73_002500at 533.427 kb on - strandat 533.429 kb on - strandat 533.446 kb on + strandat 533.666 kb on - strandat 533.695 kb on - strandat 533.737 kb on + strand, within TX73_002505at 533.738 kb on - strand, within TX73_002505at 533.747 kb on + strand, within TX73_002505at 533.782 kb on - strand, within TX73_002505at 533.815 kb on + strand, within TX73_002505at 533.871 kb on + strand, within TX73_002505at 533.877 kb on + strand, within TX73_002505at 533.885 kb on - strand, within TX73_002505at 533.938 kb on + strand, within TX73_002505at 533.943 kb on + strand, within TX73_002505at 533.952 kb on - strand, within TX73_002505at 533.961 kb on + strand, within TX73_002505at 533.993 kb on + strand, within TX73_002505at 534.045 kb on - strand, within TX73_002505at 534.055 kb on - strand, within TX73_002505at 534.057 kb on - strand, within TX73_002505at 534.160 kb on + strand, within TX73_002505at 534.194 kb on + strand, within TX73_002505at 534.210 kb on + strand, within TX73_002505at 534.252 kb on - strand, within TX73_002505at 534.263 kb on - strand, within TX73_002505at 534.345 kb on + strandat 534.369 kb on - strandat 534.392 kb on - strandat 534.445 kb on + strandat 534.450 kb on - strandat 534.453 kb on - strandat 534.461 kb on + strandat 534.469 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM_argon75_N2O25 with buyrate and 0.1 mM nitrate; in dark
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531,712 - TX73_002495 0.20 -0.1
531,712 - TX73_002495 0.20 +1.3
531,781 + TX73_002495 0.26 +0.1
531,801 + TX73_002495 0.28 -0.7
531,822 - TX73_002495 0.29 +0.5
531,830 - TX73_002495 0.30 -0.1
531,884 - TX73_002495 0.35 +0.2
531,899 + TX73_002495 0.36 -0.1
531,899 + TX73_002495 0.36 +0.6
531,929 - TX73_002495 0.39 -0.2
531,930 + TX73_002495 0.39 -0.3
531,977 - TX73_002495 0.43 -0.4
531,977 - TX73_002495 0.43 +0.3
531,980 + TX73_002495 0.43 +0.2
532,014 + TX73_002495 0.46 -0.1
532,022 - TX73_002495 0.47 -0.1
532,055 + TX73_002495 0.49 -0.8
532,055 + TX73_002495 0.49 -0.5
532,076 + TX73_002495 0.51 +0.3
532,143 + TX73_002495 0.57 -0.2
532,217 + TX73_002495 0.63 -0.3
532,266 + TX73_002495 0.68 -0.3
532,276 - TX73_002495 0.68 -0.2
532,281 - TX73_002495 0.69 -0.1
532,282 + TX73_002495 0.69 +0.4
532,301 + TX73_002495 0.71 -0.5
532,332 - TX73_002495 0.73 +0.2
532,353 + TX73_002495 0.75 -0.6
532,353 + TX73_002495 0.75 -0.5
532,353 + TX73_002495 0.75 -0.3
532,353 + TX73_002495 0.75 -0.2
532,353 + TX73_002495 0.75 +0.2
532,361 + TX73_002495 0.76 -0.4
532,361 - TX73_002495 0.76 +0.4
532,361 - TX73_002495 0.76 +0.1
532,361 - TX73_002495 0.76 +0.2
532,361 - TX73_002495 0.76 -0.1
532,455 - TX73_002495 0.84 -0.1
532,553 + -0.5
532,572 + -0.4
532,595 + -1.0
532,595 + -1.0
532,603 - -0.5
532,625 + -0.4
532,635 + +1.6
532,701 + -0.1
532,762 - TX73_002500 0.11 +0.6
532,848 - TX73_002500 0.21 +0.8
532,853 - TX73_002500 0.22 -0.5
532,908 - TX73_002500 0.29 -0.3
532,951 + TX73_002500 0.34 +0.9
532,956 + TX73_002500 0.35 +0.7
532,967 - TX73_002500 0.36 -0.0
532,969 + TX73_002500 0.36 -0.1
533,047 - TX73_002500 0.46 +0.3
533,066 - TX73_002500 0.48 -0.7
533,141 - TX73_002500 0.58 +0.7
533,181 + TX73_002500 0.63 -0.6
533,181 + TX73_002500 0.63 +0.7
533,181 + TX73_002500 0.63 +1.1
533,189 - TX73_002500 0.64 +0.2
533,235 - TX73_002500 0.69 +0.6
533,252 + TX73_002500 0.71 +0.1
533,272 + TX73_002500 0.74 -0.1
533,272 + TX73_002500 0.74 +0.5
533,282 - TX73_002500 0.75 +0.2
533,315 + TX73_002500 0.79 -0.7
533,315 + TX73_002500 0.79 +0.6
533,315 + TX73_002500 0.79 +0.5
533,323 - TX73_002500 0.80 +0.0
533,369 + TX73_002500 0.86 +0.2
533,392 + TX73_002500 0.89 -0.7
533,427 - +0.4
533,429 - +0.2
533,446 + -0.5
533,666 - +0.6
533,695 - -1.2
533,737 + TX73_002505 0.15 -0.6
533,738 - TX73_002505 0.15 +0.2
533,747 + TX73_002505 0.16 +0.2
533,782 - TX73_002505 0.20 +0.0
533,815 + TX73_002505 0.25 +0.1
533,871 + TX73_002505 0.32 +0.1
533,877 + TX73_002505 0.33 -0.1
533,885 - TX73_002505 0.34 -0.2
533,938 + TX73_002505 0.41 +0.3
533,943 + TX73_002505 0.41 +0.3
533,952 - TX73_002505 0.43 +0.3
533,961 + TX73_002505 0.44 -0.3
533,993 + TX73_002505 0.48 -0.7
534,045 - TX73_002505 0.55 +0.5
534,055 - TX73_002505 0.56 -0.2
534,057 - TX73_002505 0.56 +0.5
534,160 + TX73_002505 0.70 -0.2
534,194 + TX73_002505 0.74 -0.8
534,210 + TX73_002505 0.76 +0.2
534,252 - TX73_002505 0.82 +0.0
534,263 - TX73_002505 0.83 +0.4
534,345 + +1.2
534,369 - +0.6
534,392 - +0.3
534,445 + -0.2
534,450 - -0.9
534,453 - -0.1
534,461 + -0.0
534,469 - -0.3

Or see this region's nucleotide sequence