Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003980

Experiment: PM_argon75_N2O25 with buyrate and 0.1 mM Chloride; in dark

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_003975 and TX73_003980 overlap by 2 nucleotidesTX73_003980 and TX73_003985 are separated by 308 nucleotides TX73_003975: TX73_003975 - IS3-like element ISRpa2 family transposase, at 853,840 to 855,023 _003975 TX73_003980: TX73_003980 - pentapeptide repeat-containing protein, at 855,022 to 856,413 _003980 TX73_003985: TX73_003985 - hypothetical protein, at 856,722 to 857,180 _003985 Position (kb) 855 856 857Strain fitness (log2 ratio) -2 -1 0 1 2 3at 855.103 kb on - strandat 855.108 kb on - strandat 855.110 kb on + strandat 855.118 kb on - strandat 855.118 kb on - strandat 855.170 kb on + strand, within TX73_003980at 855.172 kb on - strand, within TX73_003980at 855.178 kb on - strand, within TX73_003980at 855.178 kb on - strand, within TX73_003980at 855.214 kb on + strand, within TX73_003980at 855.231 kb on + strand, within TX73_003980at 855.238 kb on + strand, within TX73_003980at 855.239 kb on - strand, within TX73_003980at 855.246 kb on - strand, within TX73_003980at 855.246 kb on - strand, within TX73_003980at 855.254 kb on + strand, within TX73_003980at 855.258 kb on + strand, within TX73_003980at 855.269 kb on - strand, within TX73_003980at 855.269 kb on - strand, within TX73_003980at 855.274 kb on + strand, within TX73_003980at 855.274 kb on + strand, within TX73_003980at 855.276 kb on - strand, within TX73_003980at 855.314 kb on + strand, within TX73_003980at 855.314 kb on + strand, within TX73_003980at 855.322 kb on - strand, within TX73_003980at 855.322 kb on - strand, within TX73_003980at 855.335 kb on + strand, within TX73_003980at 855.337 kb on + strand, within TX73_003980at 855.343 kb on - strand, within TX73_003980at 855.352 kb on + strand, within TX73_003980at 855.357 kb on + strand, within TX73_003980at 855.357 kb on + strand, within TX73_003980at 855.360 kb on - strand, within TX73_003980at 855.360 kb on - strand, within TX73_003980at 855.362 kb on + strand, within TX73_003980at 855.382 kb on - strand, within TX73_003980at 855.409 kb on + strand, within TX73_003980at 855.426 kb on - strand, within TX73_003980at 855.454 kb on + strand, within TX73_003980at 855.464 kb on + strand, within TX73_003980at 855.488 kb on - strand, within TX73_003980at 855.492 kb on - strand, within TX73_003980at 855.569 kb on + strand, within TX73_003980at 855.587 kb on - strand, within TX73_003980at 855.645 kb on + strand, within TX73_003980at 855.679 kb on + strand, within TX73_003980at 855.704 kb on - strand, within TX73_003980at 855.769 kb on + strand, within TX73_003980at 855.824 kb on + strand, within TX73_003980at 855.824 kb on + strand, within TX73_003980at 855.913 kb on - strand, within TX73_003980at 855.941 kb on + strand, within TX73_003980at 856.071 kb on + strand, within TX73_003980at 856.079 kb on - strand, within TX73_003980at 856.178 kb on - strand, within TX73_003980at 856.209 kb on + strand, within TX73_003980at 856.217 kb on - strand, within TX73_003980at 856.274 kb on + strandat 856.326 kb on - strandat 856.353 kb on + strandat 856.400 kb on - strandat 856.424 kb on - strandat 856.454 kb on + strandat 856.459 kb on - strandat 856.462 kb on - strandat 856.515 kb on + strandat 856.520 kb on + strandat 856.520 kb on + strandat 856.520 kb on + strandat 856.520 kb on + strandat 856.520 kb on + strandat 856.520 kb on + strandat 856.520 kb on + strandat 856.528 kb on - strandat 856.530 kb on + strandat 856.530 kb on + strandat 856.530 kb on + strandat 856.538 kb on - strandat 856.538 kb on - strandat 856.538 kb on - strandat 856.545 kb on - strandat 856.549 kb on + strandat 856.549 kb on + strandat 856.549 kb on + strandat 856.564 kb on - strandat 856.571 kb on - strandat 856.623 kb on + strandat 856.631 kb on - strandat 856.634 kb on - strandat 856.653 kb on + strandat 856.653 kb on + strandat 856.673 kb on + strandat 856.714 kb on - strandat 856.718 kb on + strandat 856.720 kb on + strandat 856.720 kb on + strandat 856.720 kb on + strandat 856.728 kb on - strandat 856.764 kb on + strandat 856.772 kb on - strand, within TX73_003985at 856.804 kb on - strand, within TX73_003985at 856.804 kb on - strand, within TX73_003985at 856.806 kb on + strand, within TX73_003985at 856.806 kb on + strand, within TX73_003985at 856.806 kb on + strand, within TX73_003985at 856.806 kb on + strand, within TX73_003985at 856.814 kb on - strand, within TX73_003985at 856.814 kb on - strand, within TX73_003985at 856.814 kb on - strand, within TX73_003985at 856.814 kb on - strand, within TX73_003985at 856.814 kb on - strand, within TX73_003985at 856.875 kb on + strand, within TX73_003985at 856.887 kb on + strand, within TX73_003985at 856.900 kb on - strand, within TX73_003985at 856.900 kb on - strand, within TX73_003985at 857.045 kb on + strand, within TX73_003985at 857.047 kb on + strand, within TX73_003985at 857.059 kb on - strand, within TX73_003985at 857.078 kb on + strand, within TX73_003985at 857.101 kb on + strand, within TX73_003985at 857.102 kb on - strand, within TX73_003985at 857.111 kb on + strand, within TX73_003985at 857.137 kb on - strandat 857.139 kb on + strandat 857.155 kb on + strandat 857.163 kb on - strandat 857.220 kb on - strandat 857.232 kb on + strandat 857.246 kb on + strandat 857.252 kb on + strandat 857.256 kb on + strandat 857.279 kb on + strandat 857.289 kb on + strandat 857.289 kb on + strandat 857.291 kb on + strandat 857.297 kb on - strandat 857.297 kb on - strandat 857.297 kb on - strandat 857.310 kb on + strandat 857.353 kb on + strandat 857.413 kb on + strandat 857.413 kb on + strandat 857.413 kb on + strandat 857.413 kb on + strandat 857.413 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM_argon75_N2O25 with buyrate and 0.1 mM Chloride; in dark
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855,103 - -0.9
855,108 - +3.5
855,110 + +0.4
855,118 - -0.6
855,118 - -0.0
855,170 + TX73_003980 0.11 +0.7
855,172 - TX73_003980 0.11 -0.5
855,178 - TX73_003980 0.11 +0.1
855,178 - TX73_003980 0.11 -1.2
855,214 + TX73_003980 0.14 +0.3
855,231 + TX73_003980 0.15 +0.1
855,238 + TX73_003980 0.16 +0.2
855,239 - TX73_003980 0.16 -1.1
855,246 - TX73_003980 0.16 -1.4
855,246 - TX73_003980 0.16 -0.1
855,254 + TX73_003980 0.17 -1.3
855,258 + TX73_003980 0.17 -1.5
855,269 - TX73_003980 0.18 -0.3
855,269 - TX73_003980 0.18 -1.0
855,274 + TX73_003980 0.18 +0.1
855,274 + TX73_003980 0.18 +0.1
855,276 - TX73_003980 0.18 -0.2
855,314 + TX73_003980 0.21 +1.1
855,314 + TX73_003980 0.21 -1.6
855,322 - TX73_003980 0.22 -0.3
855,322 - TX73_003980 0.22 +0.4
855,335 + TX73_003980 0.22 +0.5
855,337 + TX73_003980 0.23 -0.5
855,343 - TX73_003980 0.23 -0.3
855,352 + TX73_003980 0.24 -0.5
855,357 + TX73_003980 0.24 -0.1
855,357 + TX73_003980 0.24 +0.1
855,360 - TX73_003980 0.24 +1.1
855,360 - TX73_003980 0.24 -0.2
855,362 + TX73_003980 0.24 -0.3
855,382 - TX73_003980 0.26 +0.4
855,409 + TX73_003980 0.28 +0.3
855,426 - TX73_003980 0.29 -0.2
855,454 + TX73_003980 0.31 -0.7
855,464 + TX73_003980 0.32 -0.0
855,488 - TX73_003980 0.33 -0.4
855,492 - TX73_003980 0.34 -0.3
855,569 + TX73_003980 0.39 +0.0
855,587 - TX73_003980 0.41 +1.1
855,645 + TX73_003980 0.45 -0.6
855,679 + TX73_003980 0.47 -0.3
855,704 - TX73_003980 0.49 +0.0
855,769 + TX73_003980 0.54 -0.1
855,824 + TX73_003980 0.58 +0.3
855,824 + TX73_003980 0.58 +0.9
855,913 - TX73_003980 0.64 +1.2
855,941 + TX73_003980 0.66 +1.0
856,071 + TX73_003980 0.75 -0.3
856,079 - TX73_003980 0.76 +0.2
856,178 - TX73_003980 0.83 +0.2
856,209 + TX73_003980 0.85 +0.0
856,217 - TX73_003980 0.86 -0.2
856,274 + -0.3
856,326 - -0.5
856,353 + -0.3
856,400 - +0.2
856,424 - +0.5
856,454 + +0.9
856,459 - -0.3
856,462 - -0.9
856,515 + +0.3
856,520 + -1.2
856,520 + +0.7
856,520 + -0.3
856,520 + -0.0
856,520 + -1.9
856,520 + +0.9
856,520 + +0.2
856,528 - -0.1
856,530 + -0.3
856,530 + +0.2
856,530 + +0.6
856,538 - -0.4
856,538 - +0.3
856,538 - +0.1
856,545 - +1.0
856,549 + +0.3
856,549 + -0.1
856,549 + -0.4
856,564 - -0.8
856,571 - +0.9
856,623 + -0.3
856,631 - +1.3
856,634 - -1.3
856,653 + +0.2
856,653 + +0.1
856,673 + +1.8
856,714 - +0.0
856,718 + +0.4
856,720 + -0.1
856,720 + +0.5
856,720 + -0.2
856,728 - +0.1
856,764 + -0.9
856,772 - TX73_003985 0.11 -1.1
856,804 - TX73_003985 0.18 -0.4
856,804 - TX73_003985 0.18 -0.1
856,806 + TX73_003985 0.18 +0.6
856,806 + TX73_003985 0.18 -1.6
856,806 + TX73_003985 0.18 -0.5
856,806 + TX73_003985 0.18 +0.1
856,814 - TX73_003985 0.20 +0.0
856,814 - TX73_003985 0.20 -0.7
856,814 - TX73_003985 0.20 -0.5
856,814 - TX73_003985 0.20 -1.5
856,814 - TX73_003985 0.20 -0.0
856,875 + TX73_003985 0.33 +1.1
856,887 + TX73_003985 0.36 -0.6
856,900 - TX73_003985 0.39 +0.1
856,900 - TX73_003985 0.39 -0.5
857,045 + TX73_003985 0.70 -0.4
857,047 + TX73_003985 0.71 +0.6
857,059 - TX73_003985 0.73 -0.1
857,078 + TX73_003985 0.78 -0.2
857,101 + TX73_003985 0.83 +0.0
857,102 - TX73_003985 0.83 -0.2
857,111 + TX73_003985 0.85 -0.1
857,137 - -0.8
857,139 + +0.4
857,155 + +0.2
857,163 - -0.6
857,220 - -0.0
857,232 + -1.4
857,246 + -0.2
857,252 + -0.1
857,256 + +0.5
857,279 + +0.2
857,289 + -0.3
857,289 + +0.9
857,291 + -0.4
857,297 - +0.4
857,297 - -0.8
857,297 - -0.2
857,310 + +0.9
857,353 + -0.7
857,413 + -0.7
857,413 + -0.5
857,413 + +0.3
857,413 + +0.3
857,413 + -0.5

Or see this region's nucleotide sequence