Experiment: mutant library grown in Supernatant; Streptomyces ambofaciens SAI_104 grown in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02899 and MPMX20_02900 overlap by 4 nucleotides MPMX20_02900 and MPMX20_02901 overlap by 4 nucleotides MPMX20_02901 and MPMX20_02902 overlap by 8 nucleotides MPMX20_02902 and MPMX20_02903 overlap by 4 nucleotides MPMX20_02903 and MPMX20_02904 overlap by 1 nucleotides
MPMX20_02899: MPMX20_02899 - hypothetical protein, at 3,045,646 to 3,046,335
_02899
MPMX20_02900: MPMX20_02900 - putative protein YlcG, at 3,046,332 to 3,046,472
_02900
MPMX20_02901: MPMX20_02901 - hypothetical protein, at 3,046,469 to 3,047,080
_02901
MPMX20_02902: MPMX20_02902 - Serine/threonine-protein phosphatase 1, at 3,047,073 to 3,047,741
_02902
MPMX20_02903: MPMX20_02903 - hypothetical protein, at 3,047,738 to 3,047,908
_02903
MPMX20_02904: MPMX20_02904 - hypothetical protein, at 3,047,908 to 3,048,363
_02904
Position (kb)
3046
3047
3048 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.499 kb on - strand at 3045.499 kb on - strand at 3045.499 kb on - strand at 3045.499 kb on - strand at 3045.501 kb on + strand at 3045.501 kb on + strand at 3045.501 kb on + strand at 3045.501 kb on + strand at 3045.501 kb on + strand at 3045.501 kb on + strand at 3045.509 kb on - strand at 3045.509 kb on - strand at 3045.509 kb on - strand at 3045.514 kb on - strand at 3045.556 kb on + strand at 3045.563 kb on + strand at 3045.736 kb on - strand, within MPMX20_02899 at 3045.738 kb on + strand, within MPMX20_02899 at 3045.738 kb on + strand, within MPMX20_02899 at 3045.738 kb on + strand, within MPMX20_02899 at 3045.746 kb on - strand, within MPMX20_02899 at 3045.808 kb on + strand, within MPMX20_02899 at 3045.886 kb on + strand, within MPMX20_02899 at 3045.942 kb on + strand, within MPMX20_02899 at 3045.961 kb on + strand, within MPMX20_02899 at 3045.964 kb on - strand, within MPMX20_02899 at 3046.073 kb on - strand, within MPMX20_02899 at 3046.109 kb on + strand, within MPMX20_02899 at 3046.126 kb on + strand, within MPMX20_02899 at 3046.273 kb on + strand at 3046.286 kb on - strand at 3046.286 kb on - strand at 3046.476 kb on + strand at 3046.506 kb on + strand at 3046.509 kb on - strand at 3046.514 kb on - strand at 3046.514 kb on - strand at 3046.527 kb on + strand at 3046.545 kb on - strand, within MPMX20_02901 at 3046.615 kb on - strand, within MPMX20_02901 at 3046.627 kb on + strand, within MPMX20_02901 at 3046.627 kb on + strand, within MPMX20_02901 at 3046.635 kb on - strand, within MPMX20_02901 at 3046.665 kb on - strand, within MPMX20_02901 at 3046.671 kb on + strand, within MPMX20_02901 at 3046.672 kb on - strand, within MPMX20_02901 at 3046.697 kb on + strand, within MPMX20_02901 at 3046.699 kb on + strand, within MPMX20_02901 at 3046.699 kb on + strand, within MPMX20_02901 at 3046.707 kb on - strand, within MPMX20_02901 at 3046.768 kb on + strand, within MPMX20_02901 at 3046.776 kb on - strand, within MPMX20_02901 at 3046.785 kb on + strand, within MPMX20_02901 at 3046.862 kb on - strand, within MPMX20_02901 at 3046.881 kb on - strand, within MPMX20_02901 at 3046.881 kb on - strand, within MPMX20_02901 at 3046.918 kb on + strand, within MPMX20_02901 at 3046.938 kb on + strand, within MPMX20_02901 at 3046.938 kb on + strand, within MPMX20_02901 at 3046.938 kb on + strand, within MPMX20_02901 at 3046.946 kb on - strand, within MPMX20_02901 at 3046.946 kb on - strand, within MPMX20_02901 at 3046.946 kb on - strand, within MPMX20_02901 at 3046.946 kb on - strand, within MPMX20_02901 at 3046.946 kb on - strand, within MPMX20_02901 at 3046.946 kb on - strand, within MPMX20_02901 at 3046.946 kb on - strand, within MPMX20_02901 at 3046.975 kb on + strand, within MPMX20_02901 at 3046.983 kb on - strand, within MPMX20_02901 at 3046.987 kb on + strand, within MPMX20_02901 at 3046.993 kb on - strand, within MPMX20_02901 at 3046.995 kb on - strand, within MPMX20_02901 at 3047.044 kb on - strand at 3047.088 kb on + strand at 3047.089 kb on + strand at 3047.097 kb on - strand at 3047.097 kb on - strand at 3047.097 kb on - strand at 3047.168 kb on - strand, within MPMX20_02902 at 3047.209 kb on + strand, within MPMX20_02902 at 3047.235 kb on - strand, within MPMX20_02902 at 3047.249 kb on + strand, within MPMX20_02902 at 3047.249 kb on + strand, within MPMX20_02902 at 3047.313 kb on + strand, within MPMX20_02902 at 3047.401 kb on + strand, within MPMX20_02902 at 3047.530 kb on + strand, within MPMX20_02902 at 3047.530 kb on + strand, within MPMX20_02902 at 3047.530 kb on + strand, within MPMX20_02902 at 3047.530 kb on + strand, within MPMX20_02902 at 3047.530 kb on + strand, within MPMX20_02902 at 3047.530 kb on + strand, within MPMX20_02902 at 3047.530 kb on + strand, within MPMX20_02902 at 3047.538 kb on - strand, within MPMX20_02902 at 3047.538 kb on - strand, within MPMX20_02902 at 3047.538 kb on - strand, within MPMX20_02902 at 3047.538 kb on - strand, within MPMX20_02902 at 3047.563 kb on - strand, within MPMX20_02902 at 3047.563 kb on - strand, within MPMX20_02902 at 3047.624 kb on - strand, within MPMX20_02902 at 3047.655 kb on + strand, within MPMX20_02902 at 3047.663 kb on + strand, within MPMX20_02902 at 3047.681 kb on - strand at 3047.745 kb on + strand at 3047.796 kb on + strand, within MPMX20_02903 at 3047.827 kb on + strand, within MPMX20_02903 at 3047.896 kb on + strand at 3047.899 kb on - strand at 3047.899 kb on - strand at 3047.914 kb on - strand at 3047.940 kb on + strand at 3047.960 kb on + strand, within MPMX20_02904 at 3047.967 kb on - strand, within MPMX20_02904 at 3047.997 kb on - strand, within MPMX20_02904 at 3048.014 kb on - strand, within MPMX20_02904 at 3048.018 kb on + strand, within MPMX20_02904
Per-strain Table
Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Streptomyces ambofaciens SAI_104 grown in LB remove 3,045,491 + -0.9 3,045,491 + -1.7 3,045,491 + -0.5 3,045,491 + -0.4 3,045,491 + -1.7 3,045,491 + -1.5 3,045,491 + -0.8 3,045,491 + -1.1 3,045,491 + -1.6 3,045,491 + -0.9 3,045,491 + -0.5 3,045,491 + -1.0 3,045,491 + -0.9 3,045,499 - -1.6 3,045,499 - -0.8 3,045,499 - -1.8 3,045,499 - -0.7 3,045,501 + -1.7 3,045,501 + -0.7 3,045,501 + -1.6 3,045,501 + -0.8 3,045,501 + -1.0 3,045,501 + -1.1 3,045,509 - -1.0 3,045,509 - +0.5 3,045,509 - -0.8 3,045,514 - +0.0 3,045,556 + -1.3 3,045,563 + -0.2 3,045,736 - MPMX20_02899 0.13 -2.4 3,045,738 + MPMX20_02899 0.13 -1.3 3,045,738 + MPMX20_02899 0.13 -3.2 3,045,738 + MPMX20_02899 0.13 -1.4 3,045,746 - MPMX20_02899 0.14 -1.0 3,045,808 + MPMX20_02899 0.23 -1.0 3,045,886 + MPMX20_02899 0.35 -1.0 3,045,942 + MPMX20_02899 0.43 -1.1 3,045,961 + MPMX20_02899 0.46 -1.9 3,045,964 - MPMX20_02899 0.46 -2.8 3,046,073 - MPMX20_02899 0.62 -0.8 3,046,109 + MPMX20_02899 0.67 -1.3 3,046,126 + MPMX20_02899 0.70 -5.3 3,046,273 + -2.9 3,046,286 - -0.8 3,046,286 - -1.2 3,046,476 + -2.8 3,046,506 + -2.1 3,046,509 - -0.5 3,046,514 - -1.6 3,046,514 - -0.6 3,046,527 + -2.3 3,046,545 - MPMX20_02901 0.12 -1.5 3,046,615 - MPMX20_02901 0.24 -1.4 3,046,627 + MPMX20_02901 0.26 -2.3 3,046,627 + MPMX20_02901 0.26 -2.0 3,046,635 - MPMX20_02901 0.27 -1.2 3,046,665 - MPMX20_02901 0.32 -1.1 3,046,671 + MPMX20_02901 0.33 -2.1 3,046,672 - MPMX20_02901 0.33 -1.3 3,046,697 + MPMX20_02901 0.37 -1.4 3,046,699 + MPMX20_02901 0.38 -2.8 3,046,699 + MPMX20_02901 0.38 -2.3 3,046,707 - MPMX20_02901 0.39 -1.5 3,046,768 + MPMX20_02901 0.49 -2.2 3,046,776 - MPMX20_02901 0.50 -1.7 3,046,785 + MPMX20_02901 0.52 -1.4 3,046,862 - MPMX20_02901 0.64 -2.1 3,046,881 - MPMX20_02901 0.67 -2.4 3,046,881 - MPMX20_02901 0.67 -1.7 3,046,918 + MPMX20_02901 0.73 -2.5 3,046,938 + MPMX20_02901 0.77 -3.1 3,046,938 + MPMX20_02901 0.77 -1.8 3,046,938 + MPMX20_02901 0.77 -1.8 3,046,946 - MPMX20_02901 0.78 -1.6 3,046,946 - MPMX20_02901 0.78 -0.8 3,046,946 - MPMX20_02901 0.78 -1.0 3,046,946 - MPMX20_02901 0.78 -1.3 3,046,946 - MPMX20_02901 0.78 -1.7 3,046,946 - MPMX20_02901 0.78 -1.5 3,046,946 - MPMX20_02901 0.78 -1.8 3,046,975 + MPMX20_02901 0.83 -2.2 3,046,983 - MPMX20_02901 0.84 -1.2 3,046,987 + MPMX20_02901 0.85 -2.7 3,046,993 - MPMX20_02901 0.86 -1.5 3,046,995 - MPMX20_02901 0.86 -2.4 3,047,044 - -1.0 3,047,088 + -1.0 3,047,089 + -1.3 3,047,097 - -1.6 3,047,097 - -0.9 3,047,097 - -2.2 3,047,168 - MPMX20_02902 0.14 -2.0 3,047,209 + MPMX20_02902 0.20 -1.0 3,047,235 - MPMX20_02902 0.24 -1.4 3,047,249 + MPMX20_02902 0.26 -2.2 3,047,249 + MPMX20_02902 0.26 -2.1 3,047,313 + MPMX20_02902 0.36 -2.7 3,047,401 + MPMX20_02902 0.49 -0.5 3,047,530 + MPMX20_02902 0.68 -2.2 3,047,530 + MPMX20_02902 0.68 -0.5 3,047,530 + MPMX20_02902 0.68 -2.1 3,047,530 + MPMX20_02902 0.68 -1.2 3,047,530 + MPMX20_02902 0.68 -1.4 3,047,530 + MPMX20_02902 0.68 -0.6 3,047,530 + MPMX20_02902 0.68 -1.4 3,047,538 - MPMX20_02902 0.70 -0.9 3,047,538 - MPMX20_02902 0.70 -0.8 3,047,538 - MPMX20_02902 0.70 -0.6 3,047,538 - MPMX20_02902 0.70 -0.8 3,047,563 - MPMX20_02902 0.73 -0.6 3,047,563 - MPMX20_02902 0.73 -1.2 3,047,624 - MPMX20_02902 0.82 -1.5 3,047,655 + MPMX20_02902 0.87 -0.3 3,047,663 + MPMX20_02902 0.88 -2.3 3,047,681 - -1.1 3,047,745 + -1.1 3,047,796 + MPMX20_02903 0.34 -1.6 3,047,827 + MPMX20_02903 0.52 -1.5 3,047,896 + -2.4 3,047,899 - -0.9 3,047,899 - -0.6 3,047,914 - -1.1 3,047,940 + -2.3 3,047,960 + MPMX20_02904 0.11 -1.2 3,047,967 - MPMX20_02904 0.13 -0.4 3,047,997 - MPMX20_02904 0.20 -0.4 3,048,014 - MPMX20_02904 0.23 -0.7 3,048,018 + MPMX20_02904 0.24 -1.7
Or see this region's nucleotide sequence