Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_020175

Experiment: PM_N2O butyrate and nitrate 0.1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM_N2O butyrate and nitrate 0.1 mM
4,389,630	-				-0.4
4,389,634	-				+1.0
4,389,659	+				+1.0
4,389,682	+				+0.1
4,389,730	+				+1.1
4,389,730	+				+1.3
4,389,756	+				+1.0
4,389,756	+				+1.0
4,389,764	-		TX73_020170	0.10	+0.9
4,389,766	+		TX73_020170	0.11	+0.9
4,389,769	-		TX73_020170	0.11	+1.0
4,389,771	+		TX73_020170	0.11	+1.1
4,389,772	+		TX73_020170	0.11	+1.1
4,389,780	-		TX73_020170	0.12	+0.9
4,389,780	-		TX73_020170	0.12	+0.9
4,389,786	-		TX73_020170	0.13	+1.2
4,389,810	+		TX73_020170	0.16	+1.2
4,389,814	-		TX73_020170	0.17	+1.8
4,389,820	-		TX73_020170	0.18	+0.9
4,389,829	+		TX73_020170	0.19	+1.3
4,389,846	+		TX73_020170	0.21	+0.9
4,389,861	-		TX73_020170	0.23	+1.2
4,389,930	-		TX73_020170	0.32	+0.8
4,389,934	+		TX73_020170	0.33	+1.3
4,389,971	+		TX73_020170	0.37	+1.0
4,389,971	+		TX73_020170	0.37	+1.1
4,390,079	+		TX73_020170	0.52	+1.2
4,390,086	+		TX73_020170	0.52	+1.3
4,390,232	+		TX73_020170	0.72	+1.5
4,390,232	+		TX73_020170	0.72	+0.8
4,390,280	-		TX73_020170	0.78	+0.7
4,390,280	-		TX73_020170	0.78	+1.4
4,390,280	-		TX73_020170	0.78	+0.8
4,390,326	+		TX73_020170	0.84	+1.2
4,390,356	-		TX73_020170	0.88	+1.1
4,390,382	-				+1.2
4,390,428	+				+1.5
4,390,436	-				+1.1
4,390,493	-				+0.6
4,390,493	-				-0.1
4,390,493	-				+0.0
4,390,538	+				+0.5
4,390,543	+				-0.6
4,390,597	-				-0.0
4,390,624	-				-0.5
4,390,656	+				-0.2
4,390,673	-				-0.1
4,390,692	-				+0.2
4,390,701	+				+0.2
4,390,733	-				-0.2
4,390,743	-				+1.2
4,390,743	-				-0.1
4,390,806	+				+0.9
4,390,811	+				+0.3
4,390,836	+				+0.0
4,390,866	+				+0.6
4,390,869	-				+0.8
4,390,874	-				+1.5
4,390,905	-				+0.9
4,390,924	+				+0.8
4,390,931	+				+0.3
4,390,932	-				+0.7
4,391,019	-		TX73_020175	0.11	+0.2
4,391,020	+		TX73_020175	0.11	+0.6
4,391,151	-		TX73_020175	0.14	+1.0
4,391,199	-		TX73_020175	0.16	+0.9
4,391,204	+		TX73_020175	0.16	+1.5
4,391,256	+		TX73_020175	0.17	+0.7
4,391,279	-		TX73_020175	0.18	+0.6
4,391,295	+		TX73_020175	0.18	+0.8
4,391,295	+		TX73_020175	0.18	+0.4
4,391,303	-		TX73_020175	0.18	+1.1
4,391,358	-		TX73_020175	0.20	+1.1
4,391,421	-		TX73_020175	0.22	+1.0
4,391,607	+		TX73_020175	0.26	+0.9
4,391,822	+		TX73_020175	0.32	+0.7
4,391,854	-		TX73_020175	0.33	+0.7
4,391,861	-		TX73_020175	0.33	+0.7
4,391,891	-		TX73_020175	0.34	+1.2
4,391,933	-		TX73_020175	0.35	+1.1
4,391,944	-		TX73_020175	0.36	+1.4
4,391,963	+		TX73_020175	0.36	+1.3
4,391,971	-		TX73_020175	0.36	+0.8
4,392,018	+		TX73_020175	0.38	+0.7
4,392,018	+		TX73_020175	0.38	+1.1
4,392,026	-		TX73_020175	0.38	+0.8
4,392,026	-		TX73_020175	0.38	+0.6
4,392,026	-		TX73_020175	0.38	+0.6
4,392,059	+		TX73_020175	0.39	+0.9
4,392,083	-		TX73_020175	0.39	+1.0
4,392,144	-		TX73_020175	0.41	+0.5
4,392,148	+		TX73_020175	0.41	+0.9
4,392,218	-		TX73_020175	0.43	+0.4
4,392,244	+		TX73_020175	0.44	+1.0
4,392,267	+		TX73_020175	0.44	+0.6
4,392,275	-		TX73_020175	0.44	+1.3
4,392,275	-		TX73_020175	0.44	+1.5
4,392,275	-		TX73_020175	0.44	+1.2
4,392,275	-		TX73_020175	0.44	+0.9
4,392,275	-		TX73_020175	0.44	+0.4
4,392,275	-		TX73_020175	0.44	+0.7
4,392,275	-		TX73_020175	0.44	+1.0
4,392,275	-		TX73_020175	0.44	+0.7
4,392,275	-		TX73_020175	0.44	+0.3
4,392,275	-		TX73_020175	0.44	+1.1
4,392,282	+		TX73_020175	0.45	+1.1
4,392,330	+		TX73_020175	0.46	+0.0
4,392,338	-		TX73_020175	0.46	+1.1
4,392,338	-		TX73_020175	0.46	+0.8
4,392,340	-		TX73_020175	0.46	+0.9
4,392,362	-		TX73_020175	0.47	+0.8
4,392,363	+		TX73_020175	0.47	+0.8
4,392,363	-		TX73_020175	0.47	+0.5
4,392,383	-		TX73_020175	0.47	+1.0
4,392,384	-		TX73_020175	0.47	+1.0
4,392,394	-		TX73_020175	0.48	+0.5
4,392,426	+		TX73_020175	0.48	+1.2
4,392,429	-		TX73_020175	0.49	+0.7
4,392,441	+		TX73_020175	0.49	+0.6
4,392,449	-		TX73_020175	0.49	+0.3
4,392,451	+		TX73_020175	0.49	+0.6
4,392,451	+		TX73_020175	0.49	+0.9
4,392,459	-		TX73_020175	0.49	+0.9
4,392,460	-		TX73_020175	0.49	+0.8
4,392,467	-		TX73_020175	0.50	+0.7
4,392,467	-		TX73_020175	0.50	+1.3
4,392,473	+		TX73_020175	0.50	+0.7
4,392,494	+		TX73_020175	0.50	+0.9
4,392,508	+		TX73_020175	0.51	+1.0
4,392,519	-		TX73_020175	0.51	+0.5
4,392,573	-		TX73_020175	0.52	+0.7
4,392,580	-		TX73_020175	0.53	+0.9
4,392,617	-		TX73_020175	0.54	+0.5
4,392,620	-		TX73_020175	0.54	+0.6
4,392,724	-		TX73_020175	0.56	+0.9
4,392,732	-		TX73_020175	0.57	+0.9
4,392,766	+		TX73_020175	0.58	+0.7
4,392,772	+		TX73_020175	0.58	+0.8
4,392,779	+		TX73_020175	0.58	+0.6
4,392,782	-		TX73_020175	0.58	+0.4
4,392,857	+		TX73_020175	0.60	+0.4
4,392,876	+		TX73_020175	0.61	+0.5
4,392,879	+		TX73_020175	0.61	+0.7
4,392,879	+		TX73_020175	0.61	+0.3
4,392,886	+		TX73_020175	0.61	+0.4
4,392,887	-		TX73_020175	0.61	+0.8
4,392,887	-		TX73_020175	0.61	+0.6
4,392,887	-		TX73_020175	0.61	+1.3
4,392,894	-		TX73_020175	0.61	+1.0
4,392,894	-		TX73_020175	0.61	+0.7
4,392,899	-		TX73_020175	0.61	+0.8
4,392,938	+		TX73_020175	0.62	+1.0
4,392,938	+		TX73_020175	0.62	+0.9
4,392,943	-		TX73_020175	0.62	+0.8
4,392,946	-		TX73_020175	0.62	+0.9
4,392,948	+		TX73_020175	0.62	+0.4
4,392,948	+		TX73_020175	0.62	+1.3
4,392,956	-		TX73_020175	0.63	+0.8
4,392,969	-		TX73_020175	0.63	+0.7
4,392,974	-		TX73_020175	0.63	+0.8
4,393,007	+		TX73_020175	0.64	+0.9
4,393,015	-		TX73_020175	0.64	+0.6
4,393,018	+		TX73_020175	0.64	+0.7
4,393,018	+		TX73_020175	0.64	+0.8
4,393,026	-		TX73_020175	0.65	+0.7
4,393,026	-		TX73_020175	0.65	+0.7
4,393,026	-		TX73_020175	0.65	+1.0
4,393,026	-		TX73_020175	0.65	+1.0
4,393,026	-		TX73_020175	0.65	+0.7
4,393,066	-		TX73_020175	0.66	+1.0
4,393,075	+		TX73_020175	0.66	+1.3
4,393,119	-		TX73_020175	0.67	+0.9
4,393,124	-		TX73_020175	0.67	+1.2
4,393,129	-		TX73_020175	0.67	+1.5
4,393,134	+		TX73_020175	0.67	+0.8
4,393,140	-		TX73_020175	0.68	+1.1
4,393,144	-		TX73_020175	0.68	+0.5
4,393,147	+		TX73_020175	0.68	+0.3
4,393,182	+		TX73_020175	0.69	+1.0
4,393,182	+		TX73_020175	0.69	+0.8
4,393,225	+		TX73_020175	0.70	+0.6
4,393,233	+		TX73_020175	0.70	+0.9
4,393,238	+		TX73_020175	0.70	+0.7
4,393,241	-		TX73_020175	0.70	+0.9
4,393,241	-		TX73_020175	0.70	+0.7
4,393,270	-		TX73_020175	0.71	+0.7
4,393,305	+		TX73_020175	0.72	+0.4
4,393,320	+		TX73_020175	0.72	+0.8
4,393,320	+		TX73_020175	0.72	+0.9
4,393,320	+		TX73_020175	0.72	+0.7
4,393,320	+		TX73_020175	0.72	+0.8
4,393,328	-		TX73_020175	0.73	+1.1
4,393,328	-		TX73_020175	0.73	+0.6
4,393,347	+		TX73_020175	0.73	+0.8
4,393,367	+		TX73_020175	0.74	+1.2
4,393,367	-		TX73_020175	0.74	+0.6
4,393,402	+		TX73_020175	0.75	+0.6
4,393,439	-		TX73_020175	0.76	+0.7
4,393,471	+		TX73_020175	0.76	+1.4
4,393,496	-		TX73_020175	0.77	+1.1
4,393,501	-		TX73_020175	0.77	+0.7
4,393,501	-		TX73_020175	0.77	+0.7
4,393,519	+		TX73_020175	0.78	+1.2
4,393,552	-		TX73_020175	0.79	+1.0
4,393,578	+		TX73_020175	0.79	+1.2
4,393,596	-		TX73_020175	0.80	+0.4
4,393,596	-		TX73_020175	0.80	+0.7
4,393,596	-		TX73_020175	0.80	+1.1
4,393,617	+		TX73_020175	0.80	+0.8
4,393,622	-		TX73_020175	0.81	+0.8
4,393,625	-		TX73_020175	0.81	+1.1
4,393,625	-		TX73_020175	0.81	+1.1
4,393,674	-		TX73_020175	0.82	+0.4
4,393,682	+		TX73_020175	0.82	+1.1
4,393,683	-		TX73_020175	0.82	+0.3
4,393,692	+		TX73_020175	0.82	+0.6
4,393,692	+		TX73_020175	0.82	+0.9
4,393,705	-		TX73_020175	0.83	+0.9
4,393,726	+		TX73_020175	0.83	+1.0
4,393,726	+		TX73_020175	0.83	+1.0
4,393,810	+		TX73_020175	0.86	+0.9
4,393,825	-		TX73_020175	0.86	+0.7
4,393,825	-		TX73_020175	0.86	+1.0
4,393,839	+		TX73_020175	0.86	+0.7
4,393,909	+		TX73_020175	0.88	+0.9
4,393,909	+		TX73_020175	0.88	+0.0
4,393,926	+		TX73_020175	0.89	+0.6
4,393,958	-		TX73_020175	0.90	+0.5
4,393,984	+				+0.8
4,394,002	+				+0.8
4,394,002	+				+1.0
4,394,004	+				+0.9
4,394,012	-				+0.7
4,394,014	+				+0.8
4,394,014	+				+1.0
4,394,016	+				+0.9
4,394,022	-				+0.7
4,394,022	-				+1.0
4,394,048	+				+0.9
4,394,057	-				+1.4
4,394,057	-				+0.6
4,394,111	+				+0.8
4,394,115	+				+0.3
4,394,120	+				+0.4
4,394,128	-				+0.7
4,394,128	-				+0.8
4,394,133	-				+0.5
4,394,133	-				+0.9
4,394,138	-				+0.9
4,394,162	-				+0.9
4,394,171	-				+0.9
4,394,183	+				+0.6
4,394,222	-				+1.2
4,394,227	-				+0.6
4,394,283	-				+0.9
4,394,287	+				+1.0
4,394,287	+				+0.4
4,394,295	-				+1.0
4,394,298	+				-1.1
4,394,298	+				+0.3
4,394,306	-				+0.7
4,394,306	-				+0.1
4,394,355	-				+0.0
4,394,371	+				+0.2
4,394,378	-				-0.1
4,394,386	+				-0.1
4,394,417	-				-1.5
4,394,466	-				-0.2
4,394,509	-				+0.5
4,394,526	+				-0.1
4,394,526	+				-0.1
4,394,534	-				+0.5
4,394,549	-				+0.2
4,394,549	-				-0.4
4,394,556	+				-0.1
4,394,627	+				-2.1
4,394,660	+				-0.6
4,394,660	+				-0.4
4,394,665	+				-0.2
4,394,671	-				-0.2
4,394,678	-				+0.3
4,394,690	-				+0.3
4,394,690	-				+0.5
4,394,690	-				+0.5
4,394,700	-				+0.2
4,394,701	-				+0.9
4,394,713	-				-0.4
4,394,722	+				+0.0
4,394,732	+				+0.1
4,394,732	+				+0.4
4,394,804	+				-0.7
4,394,837	-				-0.1
4,394,849	-				-0.6
4,394,853	+				+0.4
4,394,855	+				-0.1
4,394,959	+		TX73_020180	0.41	-0.7
4,394,959	+		TX73_020180	0.41	-1.3
4,394,999	-		TX73_020180	0.53	-0.2
4,395,024	+		TX73_020180	0.61	+0.6
4,395,030	-		TX73_020180	0.62	+0.0
4,395,045	+		TX73_020180	0.67	-0.3
4,395,059	+		TX73_020180	0.71	-0.1
4,395,084	+		TX73_020180	0.79	-0.3
4,395,119	+		TX73_020180	0.89	-0.6
4,395,127	-				-1.5
4,395,127	-				+0.0
4,395,140	-				-0.3
4,395,168	+				+2.3
4,395,176	+				-0.2
4,395,176	-				-0.6
4,395,191	+				+0.8
4,395,201	+				+0.0
4,395,223	+				-0.2
4,395,223	+				+0.3
4,395,261	+				+0.5
4,395,264	-				-0.6