Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_013315

Experiment: PM_N2O butyrate and nitrate 0.1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM_N2O butyrate and nitrate 0.1 mM
2,925,012	-		TX73_013310	0.70	+0.5
2,925,073	+		TX73_013310	0.71	-0.2
2,925,078	+		TX73_013310	0.72	+0.6
2,925,083	+		TX73_013310	0.72	+1.0
2,925,086	-		TX73_013310	0.72	+0.1
2,925,086	-		TX73_013310	0.72	+0.3
2,925,086	-		TX73_013310	0.72	+0.1
2,925,086	-		TX73_013310	0.72	+0.7
2,925,113	-		TX73_013310	0.73	+0.2
2,925,127	+		TX73_013310	0.73	+0.8
2,925,142	+		TX73_013310	0.74	+0.5
2,925,166	+		TX73_013310	0.74	+0.7
2,925,216	-		TX73_013310	0.76	-0.1
2,925,216	-		TX73_013310	0.76	+0.2
2,925,234	-		TX73_013310	0.77	-0.1
2,925,309	+		TX73_013310	0.79	+0.9
2,925,337	-		TX73_013310	0.80	+0.5
2,925,359	+		TX73_013310	0.81	+1.0
2,925,367	-		TX73_013310	0.81	+0.3
2,925,442	-		TX73_013310	0.83	+0.5
2,925,456	+		TX73_013310	0.84	+0.1
2,925,458	+		TX73_013310	0.84	+0.6
2,925,507	+		TX73_013310	0.85	-0.6
2,925,552	-		TX73_013310	0.87	+0.3
2,925,582	+		TX73_013310	0.88	+0.9
2,925,592	-		TX73_013310	0.88	+1.1
2,925,602	+		TX73_013310	0.88	-0.0
2,925,618	+		TX73_013310	0.89	+0.1
2,925,676	+				+0.0
2,925,716	-				+0.2
2,925,734	+				+1.8
2,925,737	-				+0.5
2,925,772	+				-0.6
2,925,777	+				+0.8
2,925,780	-				+0.9
2,925,780	-				+0.4
2,925,816	+				+0.8
2,925,837	+				+1.0
2,925,839	+				-0.6
2,925,840	+				+0.4
2,925,840	+				+0.6
2,925,848	-				-0.0
2,925,850	-				+0.8
2,925,864	-				-0.4
2,925,896	-				+1.1
2,925,933	-				+0.4
2,925,941	+				+0.6
2,925,954	-				+0.0
2,925,957	+				+0.2
2,925,965	-				+2.5
2,925,983	-				+0.2
2,925,996	+				-0.3
2,925,998	-				-1.1
2,926,004	-				+0.4
2,926,008	-				+0.7
2,926,038	-				+0.5
2,926,041	+				-0.1
2,926,048	+				+0.7
2,926,049	-				+1.0
2,926,086	-				+0.8
2,926,101	+				+0.8
2,926,109	-				+0.5
2,926,133	-				+0.3
2,926,133	-				+0.4
2,926,194	+				+0.4
2,926,208	+				+0.7
2,926,208	+				+0.3
2,926,208	+				+0.2
2,926,241	+				+0.5
2,926,381	+		TX73_013315	0.13	+0.6
2,926,381	+		TX73_013315	0.13	+0.2
2,926,389	-		TX73_013315	0.14	+0.3
2,926,410	-		TX73_013315	0.14	-0.5
2,926,412	+		TX73_013315	0.14	+3.2
2,926,429	-		TX73_013315	0.15	+0.5
2,926,436	+		TX73_013315	0.15	-0.3
2,926,457	-		TX73_013315	0.16	-0.4
2,926,457	-		TX73_013315	0.16	-0.2
2,926,464	+		TX73_013315	0.16	-0.1
2,926,464	+		TX73_013315	0.16	+0.5
2,926,479	-		TX73_013315	0.17	+1.0
2,926,503	+		TX73_013315	0.17	+0.6
2,926,520	-		TX73_013315	0.18	+0.6
2,926,549	+		TX73_013315	0.19	+1.4
2,926,549	+		TX73_013315	0.19	+0.1
2,926,549	+		TX73_013315	0.19	+0.4
2,926,549	+		TX73_013315	0.19	+0.4
2,926,557	-		TX73_013315	0.19	-0.6
2,926,557	-		TX73_013315	0.19	+0.2
2,926,557	-		TX73_013315	0.19	+0.8
2,926,591	+		TX73_013315	0.20	+0.4
2,926,596	+		TX73_013315	0.20	+1.0
2,926,734	+		TX73_013315	0.25	+0.1
2,926,771	+		TX73_013315	0.26	+0.4
2,926,821	+		TX73_013315	0.28	-0.1
2,926,823	+		TX73_013315	0.28	+0.8
2,926,864	+		TX73_013315	0.29	+0.4
2,926,864	+		TX73_013315	0.29	+1.1
2,926,872	-		TX73_013315	0.29	+0.1
2,926,872	-		TX73_013315	0.29	+0.5
2,926,877	-		TX73_013315	0.29	+0.0
2,926,884	+		TX73_013315	0.30	+0.6
2,926,892	-		TX73_013315	0.30	+0.8
2,926,907	+		TX73_013315	0.30	+0.4
2,926,915	+		TX73_013315	0.31	-1.1
2,926,917	+		TX73_013315	0.31	-0.2
2,926,940	+		TX73_013315	0.31	+0.6
2,926,946	+		TX73_013315	0.32	+1.4
2,926,948	-		TX73_013315	0.32	+0.2
2,926,948	-		TX73_013315	0.32	+1.1
2,926,954	-		TX73_013315	0.32	+0.7
2,926,964	-		TX73_013315	0.32	+0.5
2,926,979	-		TX73_013315	0.33	+0.9
2,926,987	-		TX73_013315	0.33	+0.7
2,927,170	-		TX73_013315	0.39	-0.2
2,927,262	+		TX73_013315	0.42	+0.0
2,927,270	-		TX73_013315	0.42	-0.2
2,927,270	-		TX73_013315	0.42	+0.6
2,927,283	+		TX73_013315	0.42	+0.0
2,927,291	-		TX73_013315	0.43	+0.5
2,927,317	-		TX73_013315	0.44	-0.4
2,927,332	+		TX73_013315	0.44	+0.3
2,927,340	-		TX73_013315	0.44	+0.6
2,927,345	-		TX73_013315	0.44	+0.8
2,927,414	+		TX73_013315	0.47	+1.0
2,927,422	-		TX73_013315	0.47	+1.0
2,927,429	+		TX73_013315	0.47	-1.4
2,927,429	+		TX73_013315	0.47	-0.1
2,927,461	+		TX73_013315	0.48	+1.2
2,927,469	-		TX73_013315	0.48	-0.2
2,927,488	-		TX73_013315	0.49	+0.3
2,927,488	-		TX73_013315	0.49	+0.8
2,927,510	+		TX73_013315	0.50	+0.7
2,927,512	-		TX73_013315	0.50	-0.2
2,927,516	-		TX73_013315	0.50	+0.8
2,927,546	+		TX73_013315	0.51	-0.0
2,927,549	+		TX73_013315	0.51	-0.5
2,927,572	-		TX73_013315	0.52	-0.2
2,927,574	-		TX73_013315	0.52	+0.6
2,927,587	+		TX73_013315	0.52	+0.3
2,927,599	+		TX73_013315	0.53	+0.0
2,927,601	+		TX73_013315	0.53	+0.6
2,927,607	-		TX73_013315	0.53	-0.5
2,927,609	-		TX73_013315	0.53	+0.4
2,927,619	-		TX73_013315	0.53	+1.2
2,927,662	-		TX73_013315	0.55	+0.0
2,927,662	-		TX73_013315	0.55	+0.7
2,927,757	+		TX73_013315	0.58	+0.4
2,927,762	+		TX73_013315	0.58	+0.8
2,927,762	+		TX73_013315	0.58	-0.0
2,927,775	-		TX73_013315	0.58	+0.0
2,927,818	-		TX73_013315	0.60	+1.2
2,927,820	+		TX73_013315	0.60	+0.9
2,927,828	-		TX73_013315	0.60	-0.0
2,927,856	+		TX73_013315	0.61	+1.1
2,928,090	+		TX73_013315	0.68	+0.3
2,928,120	+		TX73_013315	0.69	-0.3
2,928,126	-		TX73_013315	0.70	+0.3
2,928,156	+		TX73_013315	0.70	+0.6
2,928,169	+		TX73_013315	0.71	+0.4
2,928,202	+		TX73_013315	0.72	+0.3
2,928,210	-		TX73_013315	0.72	-0.1
2,928,223	+		TX73_013315	0.73	+0.5
2,928,223	+		TX73_013315	0.73	+0.9
2,928,223	+		TX73_013315	0.73	-2.2
2,928,232	+		TX73_013315	0.73	+1.2
2,928,283	+		TX73_013315	0.75	+0.1
2,928,291	-		TX73_013315	0.75	+0.2
2,928,291	-		TX73_013315	0.75	+1.7
2,928,339	-		TX73_013315	0.76	+0.6
2,928,369	+		TX73_013315	0.77	+1.8
2,928,369	+		TX73_013315	0.77	-0.2
2,928,369	+		TX73_013315	0.77	-1.3
2,928,369	+		TX73_013315	0.77	+0.4
2,928,369	+		TX73_013315	0.77	-0.3
2,928,377	-		TX73_013315	0.78	+0.6
2,928,377	-		TX73_013315	0.78	+0.2
2,928,377	-		TX73_013315	0.78	+0.6
2,928,381	-		TX73_013315	0.78	+0.7
2,928,381	-		TX73_013315	0.78	-0.8
2,928,411	-		TX73_013315	0.79	+0.7
2,928,437	-		TX73_013315	0.80	+1.1
2,928,438	-		TX73_013315	0.80	+0.8
2,928,461	+		TX73_013315	0.80	+1.0
2,928,508	-		TX73_013315	0.82	+0.5
2,928,539	-		TX73_013315	0.83	-0.3
2,928,548	+		TX73_013315	0.83	+0.3
2,928,550	+		TX73_013315	0.83	+0.1
2,928,585	+		TX73_013315	0.84	-0.1
2,928,595	+		TX73_013315	0.85	+0.3
2,928,600	+		TX73_013315	0.85	+0.3
2,928,628	+		TX73_013315	0.86	+0.4
2,928,638	-		TX73_013315	0.86	+1.2
2,928,650	+		TX73_013315	0.86	-0.1
2,928,735	-		TX73_013315	0.89	+0.4
2,928,737	+		TX73_013315	0.89	+0.2
2,928,758	+		TX73_013315	0.90	+1.4
2,928,766	-				+0.4
2,928,830	+				+1.2
2,928,856	-				+1.2
2,928,925	-				+1.2
2,928,936	+				+0.6
2,928,982	+				+0.3
2,928,990	-				+0.7
2,929,068	+				+0.6
2,929,070	-				-0.2
2,929,077	-				-0.9
2,929,079	+				+0.6
2,929,102	+				+0.8
2,929,102	+				+0.1
2,929,110	+				+1.4
2,929,113	-				+0.2
2,929,125	+				-0.1
2,929,144	+				-0.0
2,929,152	+				+0.3
2,929,161	+		TX73_013320	0.11	+0.6
2,929,163	+		TX73_013320	0.11	-0.2
2,929,177	-		TX73_013320	0.13	-0.6
2,929,213	-		TX73_013320	0.18	+0.2
2,929,230	+		TX73_013320	0.20	-0.2
2,929,237	+		TX73_013320	0.21	+0.3
2,929,238	-		TX73_013320	0.22	+0.2
2,929,238	-		TX73_013320	0.22	+0.6
2,929,244	+		TX73_013320	0.22	+0.2
2,929,304	+		TX73_013320	0.31	-0.2
2,929,312	-		TX73_013320	0.32	+0.6
2,929,314	+		TX73_013320	0.32	-0.2
2,929,315	-		TX73_013320	0.32	+0.2
2,929,333	+		TX73_013320	0.35	-0.0
2,929,339	-		TX73_013320	0.35	+1.0
2,929,355	+		TX73_013320	0.38	+0.3
2,929,365	+		TX73_013320	0.39	+0.2
2,929,365	+		TX73_013320	0.39	-0.3
2,929,375	-		TX73_013320	0.40	+0.1
2,929,390	+		TX73_013320	0.42	-0.6
2,929,390	-		TX73_013320	0.42	-0.5
2,929,410	+		TX73_013320	0.45	+0.3
2,929,437	+		TX73_013320	0.49	+0.2
2,929,441	+		TX73_013320	0.49	-0.0
2,929,445	-		TX73_013320	0.50	+0.4
2,929,457	+		TX73_013320	0.52	-0.2
2,929,491	-		TX73_013320	0.56	+0.4
2,929,501	-		TX73_013320	0.58	-0.1
2,929,503	+		TX73_013320	0.58	+0.2
2,929,504	+		TX73_013320	0.58	-0.2
2,929,508	+		TX73_013320	0.58	+0.5
2,929,514	+		TX73_013320	0.59	-1.1
2,929,514	+		TX73_013320	0.59	+0.4
2,929,514	+		TX73_013320	0.59	+0.2
2,929,514	+		TX73_013320	0.59	+0.0
2,929,522	-		TX73_013320	0.60	+0.5
2,929,522	-		TX73_013320	0.60	-0.5
2,929,526	+		TX73_013320	0.61	+0.3
2,929,529	-		TX73_013320	0.61	-0.3
2,929,553	-		TX73_013320	0.65	-0.3
2,929,598	-		TX73_013320	0.71	+0.7
2,929,606	+		TX73_013320	0.72	-0.0
2,929,609	-		TX73_013320	0.72	-0.3
2,929,615	-		TX73_013320	0.73	+0.2
2,929,637	+		TX73_013320	0.76	+1.2
2,929,693	-		TX73_013320	0.84	+0.2
2,929,698	-		TX73_013320	0.84	-1.0
2,929,730	+		TX73_013320	0.89	-1.0
2,929,730	+		TX73_013320	0.89	+0.5
2,929,730	+		TX73_013320	0.89	-2.0
2,929,730	+		TX73_013320	0.89	-0.1
2,929,730	+		TX73_013320	0.89	+0.1
2,929,730	+		TX73_013320	0.89	+0.3
2,929,730	+		TX73_013320	0.89	-0.1
2,929,730	+		TX73_013320	0.89	+0.2
2,929,730	+		TX73_013320	0.89	-0.2
2,929,737	-		TX73_013320	0.90	+0.4
2,929,738	-				+0.7
2,929,738	-				-0.2
2,929,738	-				-1.1
2,929,738	-				-0.2
2,929,738	-				-0.4
2,929,739	+				+0.3
2,929,739	+				+0.3
2,929,739	+				+0.6
2,929,747	-				+0.3
2,929,757	-				+0.2
2,929,761	-				-0.0
2,929,807	+				-0.3
2,929,807	+				-0.6
2,929,827	-				+0.6
2,929,831	+				-0.2
2,929,844	+				-1.3
2,929,844	+				-0.7
2,929,852	-				+0.1
2,929,856	+				+0.1
2,929,856	+				+0.5
2,929,858	+				+0.0
2,930,047	-				+4.4