Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_012580

Experiment: PM_N2O butyrate and nitrate 0.1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM_N2O butyrate and nitrate 0.1 mM
2,760,505	-				+0.5
2,760,567	-				-0.4
2,760,577	+				-0.4
2,760,585	+				+0.6
2,760,619	+				+0.6
2,760,619	+				-0.2
2,760,620	+				+0.3
2,760,628	-				-0.3
2,760,629	-				+0.5
2,760,636	+				-0.0
2,760,677	+				-0.0
2,760,685	+				+0.5
2,760,696	+				-1.0
2,760,719	+				-1.1
2,760,742	-		TX73_012575	0.10	-0.1
2,760,809	-		TX73_012575	0.20	-0.5
2,760,830	+		TX73_012575	0.23	-0.1
2,760,838	-		TX73_012575	0.24	-0.0
2,760,845	+		TX73_012575	0.25	-0.1
2,760,856	+		TX73_012575	0.27	-0.3
2,760,864	-		TX73_012575	0.28	-0.1
2,760,866	+		TX73_012575	0.29	-0.2
2,760,875	-		TX73_012575	0.30	-0.5
2,760,886	-		TX73_012575	0.32	-0.8
2,760,928	+		TX73_012575	0.38	+0.3
2,760,933	+		TX73_012575	0.39	+0.4
2,760,936	-		TX73_012575	0.39	-0.5
2,760,941	-		TX73_012575	0.40	+0.3
2,760,967	-		TX73_012575	0.44	+0.6
2,760,977	+		TX73_012575	0.45	+0.3
2,760,977	+		TX73_012575	0.45	+0.7
2,760,980	-		TX73_012575	0.46	+0.8
2,760,985	+		TX73_012575	0.46	-0.2
2,761,009	+		TX73_012575	0.50	-0.1
2,761,017	-		TX73_012575	0.51	+0.9
2,761,017	-		TX73_012575	0.51	+0.3
2,761,019	+		TX73_012575	0.51	-0.1
2,761,043	+		TX73_012575	0.55	+1.1
2,761,049	+		TX73_012575	0.56	+0.5
2,761,051	-		TX73_012575	0.56	-0.2
2,761,057	+		TX73_012575	0.57	-0.3
2,761,057	-		TX73_012575	0.57	-0.1
2,761,065	-		TX73_012575	0.58	+0.2
2,761,065	-		TX73_012575	0.58	-0.6
2,761,065	-		TX73_012575	0.58	+0.4
2,761,065	-		TX73_012575	0.58	+0.0
2,761,066	-		TX73_012575	0.58	-0.6
2,761,079	+		TX73_012575	0.60	+0.2
2,761,083	+		TX73_012575	0.61	+0.3
2,761,086	-		TX73_012575	0.61	+0.5
2,761,086	-		TX73_012575	0.61	+0.6
2,761,105	+		TX73_012575	0.64	+0.1
2,761,105	+		TX73_012575	0.64	-0.2
2,761,123	+		TX73_012575	0.67	+0.4
2,761,123	+		TX73_012575	0.67	-0.7
2,761,123	+		TX73_012575	0.67	+0.4
2,761,125	+		TX73_012575	0.67	+0.5
2,761,129	+		TX73_012575	0.68	-0.3
2,761,131	-		TX73_012575	0.68	-0.3
2,761,131	-		TX73_012575	0.68	-1.0
2,761,131	-		TX73_012575	0.68	-0.0
2,761,138	-		TX73_012575	0.69	+0.4
2,761,190	+		TX73_012575	0.77	+1.3
2,761,210	+		TX73_012575	0.80	+0.3
2,761,312	+				-0.6
2,761,327	+				+0.4
2,761,330	-				-0.1
2,761,340	-				-0.2
2,761,340	-				+0.1
2,761,371	-				-0.2
2,761,432	-				+1.3
2,761,435	+				-0.6
2,761,441	-				-0.0
2,761,449	+				+0.6
2,761,449	+				-0.6
2,761,455	+				-0.6
2,761,457	-				-0.2
2,761,462	-				-0.1
2,761,468	-				-0.3
2,761,470	+				+0.8
2,761,473	-				+0.0
2,761,476	+				+0.2
2,761,478	+				-0.0
2,761,478	-				-0.3
2,761,532	+				-2.0
2,761,558	+				-2.1
2,761,558	+				-1.3
2,761,558	+				-1.5
2,761,566	-				-1.7
2,761,589	-		TX73_012580	0.10	-1.4
2,761,618	+		TX73_012580	0.13	-1.7
2,761,621	-		TX73_012580	0.13	-2.2
2,761,621	-		TX73_012580	0.13	-0.6
2,761,622	-		TX73_012580	0.13	-1.9
2,761,626	-		TX73_012580	0.14	-1.0
2,761,626	-		TX73_012580	0.14	-2.2
2,761,632	-		TX73_012580	0.14	-1.9
2,761,638	+		TX73_012580	0.15	-0.7
2,761,644	+		TX73_012580	0.15	-1.5
2,761,644	+		TX73_012580	0.15	-2.7
2,761,644	+		TX73_012580	0.15	-0.3
2,761,652	-		TX73_012580	0.16	-1.4
2,761,658	-		TX73_012580	0.16	-0.6
2,761,684	+		TX73_012580	0.19	-0.8
2,761,711	+		TX73_012580	0.21	-1.1
2,761,736	-		TX73_012580	0.24	-1.2
2,761,782	+		TX73_012580	0.28	-1.3
2,761,805	+		TX73_012580	0.30	-0.4
2,761,805	+		TX73_012580	0.30	-1.4
2,761,805	+		TX73_012580	0.30	-2.7
2,761,813	-		TX73_012580	0.31	-0.9
2,761,813	-		TX73_012580	0.31	-2.2
2,761,838	+		TX73_012580	0.33	-0.9
2,761,874	+		TX73_012580	0.36	-1.5
2,761,874	+		TX73_012580	0.36	-2.0
2,761,874	+		TX73_012580	0.36	-1.0
2,761,882	-		TX73_012580	0.37	-1.3
2,761,882	-		TX73_012580	0.37	-2.0
2,761,882	-		TX73_012580	0.37	-1.7
2,761,938	+		TX73_012580	0.42	-1.1
2,761,938	+		TX73_012580	0.42	-1.3
2,761,938	+		TX73_012580	0.42	-1.3
2,761,938	+		TX73_012580	0.42	-1.8
2,761,938	+		TX73_012580	0.42	-1.8
2,761,946	-		TX73_012580	0.43	-1.8
2,761,946	-		TX73_012580	0.43	-1.6
2,761,946	-		TX73_012580	0.43	-1.3
2,761,986	+		TX73_012580	0.47	-0.6
2,761,987	-		TX73_012580	0.47	-1.9
2,761,991	+		TX73_012580	0.47	-0.7
2,761,994	-		TX73_012580	0.47	-2.2
2,762,001	+		TX73_012580	0.48	-1.2
2,762,001	+		TX73_012580	0.48	-1.5
2,762,009	-		TX73_012580	0.49	-1.5
2,762,009	-		TX73_012580	0.49	-1.4
2,762,052	-		TX73_012580	0.53	-1.0
2,762,067	+		TX73_012580	0.54	-1.7
2,762,088	+		TX73_012580	0.56	-1.8
2,762,193	-		TX73_012580	0.65	-1.0
2,762,225	-		TX73_012580	0.68	-1.0
2,762,253	-		TX73_012580	0.71	-1.4
2,762,327	-		TX73_012580	0.78	-1.3
2,762,349	-		TX73_012580	0.80	-1.5
2,762,352	+		TX73_012580	0.80	-1.7
2,762,352	+		TX73_012580	0.80	-1.1
2,762,352	+		TX73_012580	0.80	-0.2
2,762,352	+		TX73_012580	0.80	-1.1
2,762,357	+		TX73_012580	0.80	-0.6
2,762,360	-		TX73_012580	0.81	-2.1
2,762,370	-		TX73_012580	0.82	-1.2
2,762,370	-		TX73_012580	0.82	-1.2
2,762,379	-		TX73_012580	0.83	-1.4
2,762,381	+		TX73_012580	0.83	-1.5
2,762,391	+		TX73_012580	0.84	-0.3
2,762,391	+		TX73_012580	0.84	-1.9
2,762,391	+		TX73_012580	0.84	-1.8
2,762,391	+		TX73_012580	0.84	-1.4
2,762,399	-		TX73_012580	0.84	-1.7
2,762,399	-		TX73_012580	0.84	-0.9
2,762,446	+		TX73_012580	0.89	-1.1
2,762,459	+		TX73_012580	0.90	-0.2
2,762,472	-				-0.9
2,762,491	+				-1.6
2,762,506	+				-1.5
2,762,546	-				-1.7
2,762,546	-				-1.9
2,762,546	-				-1.2
2,762,546	-				-1.0
2,762,546	-				-0.4
2,762,553	+				-0.3
2,762,558	+				-0.3
2,762,565	+				+0.2
2,762,571	-				+1.1
2,762,588	+				+0.3
2,762,638	+		TX73_012585	0.16	-1.8
2,762,645	-		TX73_012585	0.18	+1.4
2,762,655	+		TX73_012585	0.20	+0.5
2,762,670	-		TX73_012585	0.23	+2.6
2,762,682	+		TX73_012585	0.26	-0.2
2,762,682	+		TX73_012585	0.26	-0.9
2,762,730	+		TX73_012585	0.37	-1.5
2,762,733	+		TX73_012585	0.38	+0.4
2,762,733	+		TX73_012585	0.38	-1.8
2,762,738	-		TX73_012585	0.39	+1.3
2,762,744	+		TX73_012585	0.40	+0.5
2,762,752	-		TX73_012585	0.42	+1.7
2,762,752	-		TX73_012585	0.42	+1.8
2,762,770	-		TX73_012585	0.46	+0.8
2,762,791	-		TX73_012585	0.51	+0.3
2,762,829	-		TX73_012585	0.59	+1.3
2,762,844	+		TX73_012585	0.63	+0.9
2,762,844	-		TX73_012585	0.63	+2.3
2,762,892	+		TX73_012585	0.73	+0.1
2,762,903	+		TX73_012585	0.76	-0.2
2,762,920	-		TX73_012585	0.80	-0.2
2,762,925	+		TX73_012585	0.81	-0.7
2,762,959	+		TX73_012585	0.89	-0.4
2,762,959	+		TX73_012585	0.89	+0.0
2,762,959	+		TX73_012585	0.89	-0.2
2,762,959	+		TX73_012585	0.89	-0.5
2,762,967	-				-0.3
2,762,967	-				+1.0
2,762,968	-				+0.7
2,762,973	-				-0.8
2,762,981	+				+0.2
2,763,007	-				+0.6
2,763,017	+				-0.3
2,763,060	+				-1.6
2,763,066	+				-1.8
2,763,068	-				-0.8
2,763,068	-				-0.7
2,763,073	+				-0.9
2,763,083	+				-2.8
2,763,091	-				-0.8
2,763,091	-				-1.1
2,763,107	+				-1.9
2,763,108	+				-0.8
2,763,115	+				-1.2
2,763,123	-				-1.5
2,763,150	+				-1.7
2,763,150	+				-0.4
2,763,157	-				-0.7
2,763,157	-				-0.2
2,763,158	-				-2.4
2,763,160	+		TX73_012590	0.10	-1.0
2,763,168	-		TX73_012590	0.11	+0.0
2,763,173	-		TX73_012590	0.11	-1.6
2,763,178	-		TX73_012590	0.11	-0.6
2,763,178	-		TX73_012590	0.11	-2.1
2,763,216	+		TX73_012590	0.14	-0.6
2,763,242	-		TX73_012590	0.15	-0.7
2,763,259	+		TX73_012590	0.17	-1.0
2,763,274	-		TX73_012590	0.17	-1.8
2,763,348	+		TX73_012590	0.22	-1.4
2,763,410	-		TX73_012590	0.26	-1.1
2,763,410	-		TX73_012590	0.26	-1.0
2,763,410	-		TX73_012590	0.26	-1.0
2,763,414	+		TX73_012590	0.27	-0.1
2,763,431	-		TX73_012590	0.28	-1.3
2,763,439	+		TX73_012590	0.28	-0.8
2,763,439	+		TX73_012590	0.28	-1.3
2,763,441	+		TX73_012590	0.28	-0.3
2,763,447	-		TX73_012590	0.29	-2.2
2,763,469	+		TX73_012590	0.30	-1.5
2,763,470	+		TX73_012590	0.30	-2.3
2,763,500	+		TX73_012590	0.32	-1.9
2,763,503	-		TX73_012590	0.32	-2.1
2,763,516	+		TX73_012590	0.33	-1.5
2,763,526	+		TX73_012590	0.34	-0.7
2,763,531	+		TX73_012590	0.34	-2.1
2,763,534	-		TX73_012590	0.34	-1.8
2,763,534	-		TX73_012590	0.34	-1.0