Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_000440

Experiment: PM_N2O butyrate and nitrate 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_000435 and TX73_000440 are separated by 27 nucleotidesTX73_000440 and TX73_000445 are separated by 207 nucleotides TX73_000435: TX73_000435 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 96,685 to 97,560 _000435 TX73_000440: TX73_000440 - peptidoglycan-binding protein, at 97,588 to 98,931 _000440 TX73_000445: TX73_000445 - molybdopterin-synthase adenylyltransferase MoeB, at 99,139 to 99,939 _000445 Position (kb) 97 98 99Strain fitness (log2 ratio) -2 -1 0 1 2at 96.592 kb on + strandat 96.620 kb on - strandat 96.659 kb on + strandat 96.659 kb on + strandat 96.667 kb on - strandat 96.667 kb on - strandat 96.667 kb on - strandat 96.668 kb on - strandat 96.677 kb on - strandat 96.681 kb on + strandat 96.689 kb on - strandat 96.689 kb on - strandat 96.689 kb on - strandat 96.696 kb on + strandat 96.696 kb on + strandat 96.752 kb on - strandat 96.785 kb on + strand, within TX73_000435at 96.806 kb on - strand, within TX73_000435at 96.823 kb on + strand, within TX73_000435at 96.847 kb on - strand, within TX73_000435at 96.876 kb on + strand, within TX73_000435at 96.884 kb on - strand, within TX73_000435at 96.894 kb on + strand, within TX73_000435at 96.912 kb on + strand, within TX73_000435at 96.919 kb on - strand, within TX73_000435at 96.920 kb on - strand, within TX73_000435at 96.931 kb on + strand, within TX73_000435at 96.938 kb on - strand, within TX73_000435at 96.951 kb on - strand, within TX73_000435at 96.975 kb on + strand, within TX73_000435at 96.984 kb on + strand, within TX73_000435at 96.992 kb on + strand, within TX73_000435at 97.044 kb on - strand, within TX73_000435at 97.061 kb on + strand, within TX73_000435at 97.089 kb on + strand, within TX73_000435at 97.104 kb on - strand, within TX73_000435at 97.105 kb on + strand, within TX73_000435at 97.116 kb on + strand, within TX73_000435at 97.121 kb on + strand, within TX73_000435at 97.121 kb on + strand, within TX73_000435at 97.129 kb on - strand, within TX73_000435at 97.131 kb on + strand, within TX73_000435at 97.131 kb on + strand, within TX73_000435at 97.134 kb on + strand, within TX73_000435at 97.139 kb on - strand, within TX73_000435at 97.162 kb on + strand, within TX73_000435at 97.167 kb on + strand, within TX73_000435at 97.169 kb on - strand, within TX73_000435at 97.183 kb on - strand, within TX73_000435at 97.188 kb on - strand, within TX73_000435at 97.188 kb on - strand, within TX73_000435at 97.190 kb on + strand, within TX73_000435at 97.190 kb on + strand, within TX73_000435at 97.190 kb on + strand, within TX73_000435at 97.191 kb on + strand, within TX73_000435at 97.191 kb on + strand, within TX73_000435at 97.198 kb on - strand, within TX73_000435at 97.240 kb on + strand, within TX73_000435at 97.255 kb on + strand, within TX73_000435at 97.263 kb on - strand, within TX73_000435at 97.291 kb on + strand, within TX73_000435at 97.292 kb on + strand, within TX73_000435at 97.299 kb on - strand, within TX73_000435at 97.299 kb on - strand, within TX73_000435at 97.300 kb on - strand, within TX73_000435at 97.302 kb on + strand, within TX73_000435at 97.336 kb on + strand, within TX73_000435at 97.336 kb on - strand, within TX73_000435at 97.385 kb on - strand, within TX73_000435at 97.399 kb on - strand, within TX73_000435at 97.414 kb on - strand, within TX73_000435at 97.414 kb on - strand, within TX73_000435at 97.419 kb on - strand, within TX73_000435at 97.441 kb on - strand, within TX73_000435at 97.456 kb on + strand, within TX73_000435at 97.456 kb on + strand, within TX73_000435at 97.471 kb on + strand, within TX73_000435at 97.479 kb on - strandat 97.479 kb on - strandat 97.509 kb on - strandat 97.513 kb on + strandat 97.521 kb on - strandat 97.531 kb on + strandat 97.539 kb on - strandat 97.568 kb on - strandat 97.584 kb on - strandat 97.586 kb on + strandat 97.632 kb on + strandat 97.640 kb on - strandat 97.640 kb on - strandat 97.645 kb on - strandat 97.653 kb on + strandat 97.661 kb on - strandat 97.661 kb on - strandat 97.674 kb on + strandat 97.686 kb on - strandat 97.734 kb on - strand, within TX73_000440at 97.735 kb on - strand, within TX73_000440at 97.745 kb on + strand, within TX73_000440at 97.749 kb on + strand, within TX73_000440at 97.749 kb on + strand, within TX73_000440at 97.770 kb on + strand, within TX73_000440at 97.771 kb on - strand, within TX73_000440at 97.784 kb on + strand, within TX73_000440at 97.793 kb on + strand, within TX73_000440at 97.815 kb on + strand, within TX73_000440at 97.823 kb on - strand, within TX73_000440at 97.843 kb on - strand, within TX73_000440at 97.843 kb on - strand, within TX73_000440at 97.847 kb on - strand, within TX73_000440at 97.847 kb on - strand, within TX73_000440at 97.865 kb on + strand, within TX73_000440at 97.865 kb on + strand, within TX73_000440at 97.865 kb on + strand, within TX73_000440at 97.873 kb on - strand, within TX73_000440at 97.878 kb on + strand, within TX73_000440at 97.888 kb on + strand, within TX73_000440at 97.894 kb on - strand, within TX73_000440at 97.894 kb on - strand, within TX73_000440at 97.896 kb on - strand, within TX73_000440at 97.896 kb on - strand, within TX73_000440at 97.906 kb on + strand, within TX73_000440at 97.936 kb on + strand, within TX73_000440at 97.944 kb on - strand, within TX73_000440at 97.946 kb on + strand, within TX73_000440at 98.008 kb on - strand, within TX73_000440at 98.008 kb on - strand, within TX73_000440at 98.030 kb on - strand, within TX73_000440at 98.058 kb on + strand, within TX73_000440at 98.059 kb on + strand, within TX73_000440at 98.059 kb on + strand, within TX73_000440at 98.089 kb on + strand, within TX73_000440at 98.097 kb on - strand, within TX73_000440at 98.097 kb on - strand, within TX73_000440at 98.097 kb on - strand, within TX73_000440at 98.097 kb on - strand, within TX73_000440at 98.111 kb on + strand, within TX73_000440at 98.123 kb on - strand, within TX73_000440at 98.159 kb on + strand, within TX73_000440at 98.182 kb on + strand, within TX73_000440at 98.190 kb on - strand, within TX73_000440at 98.221 kb on - strand, within TX73_000440at 98.251 kb on - strand, within TX73_000440at 98.252 kb on + strand, within TX73_000440at 98.260 kb on - strand, within TX73_000440at 98.263 kb on + strand, within TX73_000440at 98.263 kb on + strand, within TX73_000440at 98.272 kb on - strand, within TX73_000440at 98.276 kb on + strand, within TX73_000440at 98.282 kb on - strand, within TX73_000440at 98.289 kb on + strand, within TX73_000440at 98.297 kb on - strand, within TX73_000440at 98.332 kb on + strand, within TX73_000440at 98.339 kb on + strand, within TX73_000440at 98.347 kb on - strand, within TX73_000440at 98.347 kb on - strand, within TX73_000440at 98.349 kb on + strand, within TX73_000440at 98.352 kb on - strand, within TX73_000440at 98.354 kb on + strand, within TX73_000440at 98.357 kb on - strand, within TX73_000440at 98.366 kb on - strand, within TX73_000440at 98.377 kb on + strand, within TX73_000440at 98.377 kb on + strand, within TX73_000440at 98.377 kb on + strand, within TX73_000440at 98.377 kb on + strand, within TX73_000440at 98.377 kb on + strand, within TX73_000440at 98.377 kb on + strand, within TX73_000440at 98.377 kb on + strand, within TX73_000440at 98.385 kb on - strand, within TX73_000440at 98.444 kb on + strand, within TX73_000440at 98.444 kb on + strand, within TX73_000440at 98.444 kb on + strand, within TX73_000440at 98.444 kb on + strand, within TX73_000440at 98.444 kb on + strand, within TX73_000440at 98.450 kb on + strand, within TX73_000440at 98.452 kb on - strand, within TX73_000440at 98.469 kb on + strand, within TX73_000440at 98.488 kb on + strand, within TX73_000440at 98.488 kb on + strand, within TX73_000440at 98.509 kb on - strand, within TX73_000440at 98.528 kb on - strand, within TX73_000440at 98.599 kb on - strand, within TX73_000440at 98.615 kb on + strand, within TX73_000440at 98.645 kb on - strand, within TX73_000440at 98.647 kb on + strand, within TX73_000440at 98.655 kb on - strand, within TX73_000440at 98.678 kb on + strand, within TX73_000440at 98.718 kb on - strand, within TX73_000440at 98.723 kb on + strand, within TX73_000440at 98.726 kb on - strand, within TX73_000440at 98.728 kb on + strand, within TX73_000440at 98.731 kb on - strand, within TX73_000440at 98.736 kb on - strand, within TX73_000440at 98.736 kb on - strand, within TX73_000440at 98.737 kb on + strand, within TX73_000440at 98.750 kb on + strand, within TX73_000440at 98.764 kb on + strand, within TX73_000440at 98.793 kb on - strand, within TX73_000440at 98.817 kb on - strandat 98.819 kb on - strandat 98.826 kb on - strandat 98.826 kb on - strandat 98.851 kb on + strandat 98.887 kb on + strandat 98.910 kb on - strandat 98.927 kb on - strandat 98.927 kb on - strandat 98.947 kb on + strandat 98.955 kb on - strandat 98.955 kb on - strandat 99.059 kb on - strandat 99.063 kb on + strandat 99.069 kb on - strandat 99.108 kb on - strandat 99.113 kb on - strandat 99.914 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM_N2O butyrate and nitrate 0.1 mM
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96,592 + +0.4
96,620 - -0.2
96,659 + +0.7
96,659 + +0.4
96,667 - -0.4
96,667 - -0.1
96,667 - -0.1
96,668 - +0.2
96,677 - -0.3
96,681 + +0.3
96,689 - -0.1
96,689 - +0.3
96,689 - +0.0
96,696 + -0.4
96,696 + -0.7
96,752 - -0.4
96,785 + TX73_000435 0.11 -0.2
96,806 - TX73_000435 0.14 +0.2
96,823 + TX73_000435 0.16 -0.4
96,847 - TX73_000435 0.18 +0.1
96,876 + TX73_000435 0.22 +0.1
96,884 - TX73_000435 0.23 -1.2
96,894 + TX73_000435 0.24 +0.3
96,912 + TX73_000435 0.26 -2.5
96,919 - TX73_000435 0.27 -0.2
96,920 - TX73_000435 0.27 +1.1
96,931 + TX73_000435 0.28 +0.1
96,938 - TX73_000435 0.29 +0.3
96,951 - TX73_000435 0.30 +0.8
96,975 + TX73_000435 0.33 +0.3
96,984 + TX73_000435 0.34 -1.4
96,992 + TX73_000435 0.35 -0.5
97,044 - TX73_000435 0.41 -0.4
97,061 + TX73_000435 0.43 -0.2
97,089 + TX73_000435 0.46 +0.1
97,104 - TX73_000435 0.48 -0.0
97,105 + TX73_000435 0.48 +0.1
97,116 + TX73_000435 0.49 -0.1
97,121 + TX73_000435 0.50 +0.7
97,121 + TX73_000435 0.50 -0.4
97,129 - TX73_000435 0.51 -0.4
97,131 + TX73_000435 0.51 -0.8
97,131 + TX73_000435 0.51 +0.8
97,134 + TX73_000435 0.51 -0.1
97,139 - TX73_000435 0.52 -0.7
97,162 + TX73_000435 0.54 -0.6
97,167 + TX73_000435 0.55 +0.1
97,169 - TX73_000435 0.55 -0.5
97,183 - TX73_000435 0.57 +0.2
97,188 - TX73_000435 0.57 -0.5
97,188 - TX73_000435 0.57 -0.2
97,190 + TX73_000435 0.58 -0.4
97,190 + TX73_000435 0.58 -0.2
97,190 + TX73_000435 0.58 +0.0
97,191 + TX73_000435 0.58 -1.1
97,191 + TX73_000435 0.58 -0.4
97,198 - TX73_000435 0.59 -0.2
97,240 + TX73_000435 0.63 -0.6
97,255 + TX73_000435 0.65 +0.4
97,263 - TX73_000435 0.66 +0.4
97,291 + TX73_000435 0.69 +0.5
97,292 + TX73_000435 0.69 -0.2
97,299 - TX73_000435 0.70 +0.4
97,299 - TX73_000435 0.70 +0.5
97,300 - TX73_000435 0.70 +0.0
97,302 + TX73_000435 0.70 -0.2
97,336 + TX73_000435 0.74 -0.2
97,336 - TX73_000435 0.74 -0.4
97,385 - TX73_000435 0.80 +0.2
97,399 - TX73_000435 0.82 -0.2
97,414 - TX73_000435 0.83 -0.0
97,414 - TX73_000435 0.83 -0.6
97,419 - TX73_000435 0.84 +0.5
97,441 - TX73_000435 0.86 +0.3
97,456 + TX73_000435 0.88 -0.4
97,456 + TX73_000435 0.88 -1.1
97,471 + TX73_000435 0.90 -1.1
97,479 - -0.4
97,479 - +0.7
97,509 - -0.4
97,513 + +0.3
97,521 - +0.7
97,531 + +0.2
97,539 - +0.4
97,568 - -0.2
97,584 - -0.8
97,586 + -0.5
97,632 + -0.2
97,640 - +0.4
97,640 - -0.3
97,645 - +0.2
97,653 + +0.1
97,661 - +0.1
97,661 - -0.4
97,674 + -0.9
97,686 - -1.2
97,734 - TX73_000440 0.11 -0.4
97,735 - TX73_000440 0.11 -0.5
97,745 + TX73_000440 0.12 +0.2
97,749 + TX73_000440 0.12 -0.5
97,749 + TX73_000440 0.12 -1.0
97,770 + TX73_000440 0.14 -0.3
97,771 - TX73_000440 0.14 -0.2
97,784 + TX73_000440 0.15 -0.2
97,793 + TX73_000440 0.15 +0.7
97,815 + TX73_000440 0.17 -1.6
97,823 - TX73_000440 0.17 -0.2
97,843 - TX73_000440 0.19 +0.0
97,843 - TX73_000440 0.19 -0.0
97,847 - TX73_000440 0.19 -0.1
97,847 - TX73_000440 0.19 -0.2
97,865 + TX73_000440 0.21 +0.7
97,865 + TX73_000440 0.21 +0.8
97,865 + TX73_000440 0.21 -0.3
97,873 - TX73_000440 0.21 -0.0
97,878 + TX73_000440 0.22 -0.9
97,888 + TX73_000440 0.22 +0.2
97,894 - TX73_000440 0.23 +0.5
97,894 - TX73_000440 0.23 +0.1
97,896 - TX73_000440 0.23 -0.3
97,896 - TX73_000440 0.23 -0.2
97,906 + TX73_000440 0.24 -0.1
97,936 + TX73_000440 0.26 -1.0
97,944 - TX73_000440 0.26 +0.1
97,946 + TX73_000440 0.27 +0.1
98,008 - TX73_000440 0.31 +0.4
98,008 - TX73_000440 0.31 -0.0
98,030 - TX73_000440 0.33 -0.3
98,058 + TX73_000440 0.35 -0.3
98,059 + TX73_000440 0.35 -0.3
98,059 + TX73_000440 0.35 -0.9
98,089 + TX73_000440 0.37 +0.2
98,097 - TX73_000440 0.38 +0.8
98,097 - TX73_000440 0.38 -0.3
98,097 - TX73_000440 0.38 -0.7
98,097 - TX73_000440 0.38 -2.5
98,111 + TX73_000440 0.39 -0.3
98,123 - TX73_000440 0.40 -0.3
98,159 + TX73_000440 0.42 +0.1
98,182 + TX73_000440 0.44 -0.2
98,190 - TX73_000440 0.45 +0.5
98,221 - TX73_000440 0.47 +0.2
98,251 - TX73_000440 0.49 +0.2
98,252 + TX73_000440 0.49 -0.5
98,260 - TX73_000440 0.50 +0.3
98,263 + TX73_000440 0.50 +0.9
98,263 + TX73_000440 0.50 -0.4
98,272 - TX73_000440 0.51 -0.6
98,276 + TX73_000440 0.51 -0.2
98,282 - TX73_000440 0.52 -0.1
98,289 + TX73_000440 0.52 +0.6
98,297 - TX73_000440 0.53 -0.7
98,332 + TX73_000440 0.55 -0.6
98,339 + TX73_000440 0.56 +0.0
98,347 - TX73_000440 0.56 +0.2
98,347 - TX73_000440 0.56 -0.8
98,349 + TX73_000440 0.57 -0.4
98,352 - TX73_000440 0.57 -0.5
98,354 + TX73_000440 0.57 -0.1
98,357 - TX73_000440 0.57 -2.3
98,366 - TX73_000440 0.58 -0.1
98,377 + TX73_000440 0.59 -0.5
98,377 + TX73_000440 0.59 +0.6
98,377 + TX73_000440 0.59 +0.4
98,377 + TX73_000440 0.59 +0.4
98,377 + TX73_000440 0.59 -0.5
98,377 + TX73_000440 0.59 -0.6
98,377 + TX73_000440 0.59 -1.2
98,385 - TX73_000440 0.59 -0.1
98,444 + TX73_000440 0.64 -0.5
98,444 + TX73_000440 0.64 -0.1
98,444 + TX73_000440 0.64 -0.4
98,444 + TX73_000440 0.64 -0.9
98,444 + TX73_000440 0.64 -0.4
98,450 + TX73_000440 0.64 -0.4
98,452 - TX73_000440 0.64 -0.8
98,469 + TX73_000440 0.66 -0.3
98,488 + TX73_000440 0.67 -1.5
98,488 + TX73_000440 0.67 -0.1
98,509 - TX73_000440 0.69 +0.5
98,528 - TX73_000440 0.70 -0.4
98,599 - TX73_000440 0.75 +0.0
98,615 + TX73_000440 0.76 +0.1
98,645 - TX73_000440 0.79 -0.5
98,647 + TX73_000440 0.79 -0.1
98,655 - TX73_000440 0.79 +1.4
98,678 + TX73_000440 0.81 +0.0
98,718 - TX73_000440 0.84 +0.0
98,723 + TX73_000440 0.84 +0.1
98,726 - TX73_000440 0.85 +0.2
98,728 + TX73_000440 0.85 -0.8
98,731 - TX73_000440 0.85 -0.1
98,736 - TX73_000440 0.85 -0.3
98,736 - TX73_000440 0.85 -0.2
98,737 + TX73_000440 0.85 -0.9
98,750 + TX73_000440 0.86 -0.2
98,764 + TX73_000440 0.88 -0.2
98,793 - TX73_000440 0.90 -1.1
98,817 - -0.2
98,819 - -0.4
98,826 - -0.2
98,826 - -0.4
98,851 + -0.2
98,887 + -0.5
98,910 - +2.4
98,927 - -0.4
98,927 - +0.1
98,947 + -1.8
98,955 - -1.2
98,955 - -0.1
99,059 - +0.5
99,063 + -0.5
99,069 - -1.4
99,108 - -0.4
99,113 - -1.2
99,914 + -0.3

Or see this region's nucleotide sequence