Experiment: PM_N2O butyrate and nitrate 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_022470 and TX73_022475 are separated by 279 nucleotides TX73_022475 and TX73_022480 overlap by 40 nucleotides TX73_022480 and TX73_022485 overlap by 74 nucleotides
TX73_022470: TX73_022470 - aldo/keto reductase, at 4,887,318 to 4,888,259
_022470
TX73_022475: TX73_022475 - hypothetical protein, at 4,888,539 to 4,888,748
_022475
TX73_022480: TX73_022480 - HAD family phosphatase, at 4,888,709 to 4,889,452
_022480
TX73_022485: TX73_022485 - TetR/AcrR family transcriptional regulator, at 4,889,379 to 4,890,059
_022485
Position (kb) 4888
4889 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4887.649 kb on - strand, within TX73_022470 at 4887.726 kb on + strand, within TX73_022470 at 4887.815 kb on + strand, within TX73_022470 at 4887.854 kb on - strand, within TX73_022470 at 4887.856 kb on + strand, within TX73_022470 at 4887.856 kb on + strand, within TX73_022470 at 4887.864 kb on - strand, within TX73_022470 at 4887.973 kb on + strand, within TX73_022470 at 4888.123 kb on - strand, within TX73_022470 at 4888.176 kb on - strand at 4888.190 kb on + strand at 4888.197 kb on + strand at 4888.428 kb on + strand at 4888.434 kb on + strand at 4888.446 kb on + strand at 4888.447 kb on - strand at 4888.448 kb on + strand at 4888.454 kb on - strand at 4888.499 kb on + strand at 4888.509 kb on + strand at 4888.509 kb on + strand at 4888.544 kb on + strand at 4888.567 kb on + strand, within TX73_022475 at 4888.710 kb on - strand at 4888.723 kb on - strand at 4888.773 kb on + strand at 4888.786 kb on - strand, within TX73_022480 at 4888.804 kb on + strand, within TX73_022480 at 4888.804 kb on + strand, within TX73_022480 at 4888.812 kb on - strand, within TX73_022480 at 4888.812 kb on - strand, within TX73_022480 at 4888.812 kb on - strand, within TX73_022480 at 4888.812 kb on - strand, within TX73_022480 at 4888.852 kb on - strand, within TX73_022480 at 4888.925 kb on + strand, within TX73_022480 at 4888.930 kb on - strand, within TX73_022480 at 4888.958 kb on - strand, within TX73_022480 at 4889.010 kb on - strand, within TX73_022480 at 4889.035 kb on - strand, within TX73_022480 at 4889.042 kb on - strand, within TX73_022480 at 4889.081 kb on + strand, within TX73_022480 at 4889.117 kb on + strand, within TX73_022480 at 4889.127 kb on - strand, within TX73_022480 at 4889.156 kb on + strand, within TX73_022480 at 4889.156 kb on + strand, within TX73_022480 at 4889.156 kb on + strand, within TX73_022480 at 4889.159 kb on - strand, within TX73_022480 at 4889.164 kb on - strand, within TX73_022480 at 4889.164 kb on - strand, within TX73_022480 at 4889.255 kb on - strand, within TX73_022480 at 4889.311 kb on + strand, within TX73_022480 at 4889.315 kb on - strand, within TX73_022480 at 4889.376 kb on - strand, within TX73_022480 at 4889.447 kb on + strand at 4889.575 kb on - strand, within TX73_022485
Per-strain Table
Position Strand Gene LocusTag Fraction PM_N2O butyrate and nitrate 0.1 mM remove 4,887,649 - TX73_022470 0.35 -1.1 4,887,726 + TX73_022470 0.43 -1.5 4,887,815 + TX73_022470 0.53 -0.3 4,887,854 - TX73_022470 0.57 +0.0 4,887,856 + TX73_022470 0.57 -0.3 4,887,856 + TX73_022470 0.57 -0.8 4,887,864 - TX73_022470 0.58 -0.2 4,887,973 + TX73_022470 0.70 -1.6 4,888,123 - TX73_022470 0.85 -0.1 4,888,176 - -2.6 4,888,190 + -0.9 4,888,197 + -0.7 4,888,428 + -0.2 4,888,434 + -0.3 4,888,446 + -0.4 4,888,447 - -0.1 4,888,448 + +0.4 4,888,454 - +0.2 4,888,499 + +0.0 4,888,509 + -0.1 4,888,509 + +0.5 4,888,544 + -0.1 4,888,567 + TX73_022475 0.13 -0.0 4,888,710 - +0.5 4,888,723 - -0.3 4,888,773 + -0.1 4,888,786 - TX73_022480 0.10 +0.4 4,888,804 + TX73_022480 0.13 +0.0 4,888,804 + TX73_022480 0.13 +2.5 4,888,812 - TX73_022480 0.14 -0.6 4,888,812 - TX73_022480 0.14 -1.0 4,888,812 - TX73_022480 0.14 -0.3 4,888,812 - TX73_022480 0.14 -0.1 4,888,852 - TX73_022480 0.19 -0.6 4,888,925 + TX73_022480 0.29 +0.6 4,888,930 - TX73_022480 0.30 -0.7 4,888,958 - TX73_022480 0.33 -0.2 4,889,010 - TX73_022480 0.40 -0.7 4,889,035 - TX73_022480 0.44 -0.1 4,889,042 - TX73_022480 0.45 -0.5 4,889,081 + TX73_022480 0.50 +0.3 4,889,117 + TX73_022480 0.55 -0.3 4,889,127 - TX73_022480 0.56 -0.9 4,889,156 + TX73_022480 0.60 +0.3 4,889,156 + TX73_022480 0.60 +0.5 4,889,156 + TX73_022480 0.60 +0.2 4,889,159 - TX73_022480 0.60 -1.2 4,889,164 - TX73_022480 0.61 -0.6 4,889,164 - TX73_022480 0.61 +0.2 4,889,255 - TX73_022480 0.73 -0.2 4,889,311 + TX73_022480 0.81 +0.5 4,889,315 - TX73_022480 0.81 +0.0 4,889,376 - TX73_022480 0.90 +0.2 4,889,447 + +0.6 4,889,575 - TX73_022485 0.29 +0.1
Or see this region's nucleotide sequence