Experiment: PM_N2O butyrate and nitrate 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_021970 and TX73_021975 are separated by 139 nucleotides TX73_021975 and TX73_021980 are separated by 254 nucleotides
TX73_021970: TX73_021970 - bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase, at 4,781,249 to 4,783,972
_021970
TX73_021975: TX73_021975 - CBS domain-containing protein, at 4,784,112 to 4,784,540
_021975
TX73_021980: TX73_021980 - AAA family ATPase, at 4,784,795 to 4,786,354
_021980
Position (kb) 4784
4785 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4783.121 kb on + strand, within TX73_021970 at 4783.129 kb on - strand, within TX73_021970 at 4783.129 kb on - strand, within TX73_021970 at 4783.129 kb on - strand, within TX73_021970 at 4783.171 kb on + strand, within TX73_021970 at 4783.176 kb on + strand, within TX73_021970 at 4783.177 kb on - strand, within TX73_021970 at 4783.178 kb on + strand, within TX73_021970 at 4783.178 kb on + strand, within TX73_021970 at 4783.184 kb on - strand, within TX73_021970 at 4783.184 kb on - strand, within TX73_021970 at 4783.184 kb on - strand, within TX73_021970 at 4783.184 kb on - strand, within TX73_021970 at 4783.184 kb on - strand, within TX73_021970 at 4783.186 kb on - strand, within TX73_021970 at 4783.186 kb on - strand, within TX73_021970 at 4783.197 kb on - strand, within TX73_021970 at 4783.226 kb on + strand, within TX73_021970 at 4783.228 kb on + strand, within TX73_021970 at 4783.236 kb on - strand, within TX73_021970 at 4783.240 kb on + strand, within TX73_021970 at 4783.267 kb on + strand, within TX73_021970 at 4783.272 kb on + strand, within TX73_021970 at 4783.272 kb on + strand, within TX73_021970 at 4783.275 kb on - strand, within TX73_021970 at 4783.275 kb on - strand, within TX73_021970 at 4783.280 kb on - strand, within TX73_021970 at 4783.280 kb on - strand, within TX73_021970 at 4783.280 kb on - strand, within TX73_021970 at 4783.280 kb on - strand, within TX73_021970 at 4783.280 kb on - strand, within TX73_021970 at 4783.280 kb on - strand, within TX73_021970 at 4783.285 kb on - strand, within TX73_021970 at 4783.330 kb on + strand, within TX73_021970 at 4783.335 kb on + strand, within TX73_021970 at 4783.335 kb on + strand, within TX73_021970 at 4783.335 kb on + strand, within TX73_021970 at 4783.345 kb on - strand, within TX73_021970 at 4783.387 kb on + strand, within TX73_021970 at 4783.393 kb on - strand, within TX73_021970 at 4783.436 kb on - strand, within TX73_021970 at 4783.453 kb on - strand, within TX73_021970 at 4783.465 kb on + strand, within TX73_021970 at 4783.558 kb on - strand, within TX73_021970 at 4783.573 kb on + strand, within TX73_021970 at 4783.591 kb on - strand, within TX73_021970 at 4783.646 kb on - strand, within TX73_021970 at 4783.652 kb on + strand, within TX73_021970 at 4783.713 kb on + strand at 4783.797 kb on + strand at 4783.797 kb on + strand at 4783.797 kb on + strand at 4783.797 kb on + strand at 4783.805 kb on - strand at 4783.813 kb on + strand at 4783.813 kb on + strand at 4783.813 kb on + strand at 4783.882 kb on - strand at 4783.888 kb on + strand at 4783.932 kb on + strand at 4783.950 kb on - strand at 4783.953 kb on - strand at 4783.957 kb on + strand at 4783.965 kb on + strand at 4783.969 kb on + strand at 4783.973 kb on - strand at 4783.978 kb on - strand at 4783.983 kb on - strand at 4784.010 kb on + strand at 4784.018 kb on - strand at 4784.042 kb on + strand at 4784.050 kb on - strand at 4784.103 kb on - strand at 4784.115 kb on + strand at 4784.128 kb on - strand at 4784.145 kb on + strand at 4784.162 kb on + strand, within TX73_021975 at 4784.175 kb on - strand, within TX73_021975 at 4784.188 kb on + strand, within TX73_021975 at 4784.211 kb on + strand, within TX73_021975 at 4784.225 kb on - strand, within TX73_021975 at 4784.266 kb on + strand, within TX73_021975 at 4784.287 kb on - strand, within TX73_021975 at 4784.328 kb on - strand, within TX73_021975 at 4784.328 kb on - strand, within TX73_021975 at 4784.398 kb on + strand, within TX73_021975 at 4784.411 kb on - strand, within TX73_021975 at 4784.422 kb on - strand, within TX73_021975 at 4784.507 kb on - strand at 4784.548 kb on - strand at 4784.554 kb on - strand at 4784.596 kb on - strand at 4784.633 kb on + strand at 4784.665 kb on - strand at 4784.673 kb on + strand at 4784.769 kb on - strand at 4784.774 kb on - strand at 4784.776 kb on + strand at 4784.781 kb on + strand at 4784.784 kb on - strand at 4784.797 kb on - strand at 4784.797 kb on - strand at 4784.802 kb on + strand at 4784.805 kb on - strand at 4784.823 kb on + strand at 4784.823 kb on + strand at 4784.831 kb on - strand at 4784.882 kb on - strand at 4784.963 kb on + strand, within TX73_021980 at 4784.973 kb on + strand, within TX73_021980 at 4784.973 kb on + strand, within TX73_021980 at 4784.973 kb on + strand, within TX73_021980 at 4784.981 kb on - strand, within TX73_021980 at 4784.981 kb on - strand, within TX73_021980 at 4784.981 kb on - strand, within TX73_021980 at 4784.981 kb on - strand, within TX73_021980 at 4784.981 kb on - strand, within TX73_021980 at 4784.981 kb on - strand, within TX73_021980 at 4785.011 kb on + strand, within TX73_021980 at 4785.012 kb on + strand, within TX73_021980 at 4785.021 kb on - strand, within TX73_021980 at 4785.021 kb on - strand, within TX73_021980 at 4785.021 kb on - strand, within TX73_021980 at 4785.054 kb on - strand, within TX73_021980 at 4785.062 kb on + strand, within TX73_021980 at 4785.084 kb on - strand, within TX73_021980 at 4785.094 kb on - strand, within TX73_021980 at 4785.118 kb on + strand, within TX73_021980 at 4785.118 kb on + strand, within TX73_021980 at 4785.149 kb on - strand, within TX73_021980 at 4785.151 kb on - strand, within TX73_021980 at 4785.159 kb on + strand, within TX73_021980 at 4785.167 kb on + strand, within TX73_021980 at 4785.171 kb on - strand, within TX73_021980 at 4785.192 kb on + strand, within TX73_021980 at 4785.192 kb on + strand, within TX73_021980 at 4785.192 kb on + strand, within TX73_021980 at 4785.192 kb on + strand, within TX73_021980 at 4785.192 kb on + strand, within TX73_021980 at 4785.192 kb on + strand, within TX73_021980 at 4785.192 kb on + strand, within TX73_021980 at 4785.192 kb on + strand, within TX73_021980 at 4785.192 kb on + strand, within TX73_021980 at 4785.192 kb on + strand, within TX73_021980 at 4785.192 kb on + strand, within TX73_021980 at 4785.192 kb on + strand, within TX73_021980 at 4785.192 kb on + strand, within TX73_021980 at 4785.192 kb on + strand, within TX73_021980 at 4785.192 kb on + strand, within TX73_021980 at 4785.192 kb on + strand, within TX73_021980 at 4785.192 kb on + strand, within TX73_021980 at 4785.192 kb on + strand, within TX73_021980 at 4785.192 kb on + strand, within TX73_021980 at 4785.192 kb on + strand, within TX73_021980 at 4785.192 kb on + strand, within TX73_021980 at 4785.200 kb on - strand, within TX73_021980 at 4785.200 kb on - strand, within TX73_021980 at 4785.200 kb on - strand, within TX73_021980 at 4785.200 kb on - strand, within TX73_021980 at 4785.200 kb on - strand, within TX73_021980 at 4785.200 kb on - strand, within TX73_021980 at 4785.200 kb on - strand, within TX73_021980 at 4785.200 kb on - strand, within TX73_021980 at 4785.200 kb on - strand, within TX73_021980 at 4785.200 kb on - strand, within TX73_021980 at 4785.200 kb on - strand, within TX73_021980 at 4785.200 kb on - strand, within TX73_021980 at 4785.200 kb on - strand, within TX73_021980 at 4785.200 kb on - strand, within TX73_021980 at 4785.200 kb on - strand, within TX73_021980 at 4785.200 kb on - strand, within TX73_021980 at 4785.200 kb on - strand, within TX73_021980 at 4785.200 kb on - strand, within TX73_021980 at 4785.200 kb on - strand, within TX73_021980 at 4785.200 kb on - strand, within TX73_021980 at 4785.200 kb on - strand, within TX73_021980 at 4785.205 kb on - strand, within TX73_021980 at 4785.210 kb on - strand, within TX73_021980 at 4785.210 kb on - strand, within TX73_021980 at 4785.243 kb on - strand, within TX73_021980 at 4785.249 kb on - strand, within TX73_021980 at 4785.261 kb on + strand, within TX73_021980 at 4785.265 kb on + strand, within TX73_021980 at 4785.265 kb on + strand, within TX73_021980 at 4785.271 kb on - strand, within TX73_021980 at 4785.271 kb on - strand, within TX73_021980 at 4785.271 kb on - strand, within TX73_021980 at 4785.273 kb on - strand, within TX73_021980 at 4785.290 kb on + strand, within TX73_021980 at 4785.293 kb on - strand, within TX73_021980 at 4785.363 kb on - strand, within TX73_021980 at 4785.374 kb on + strand, within TX73_021980 at 4785.396 kb on + strand, within TX73_021980 at 4785.401 kb on + strand, within TX73_021980 at 4785.404 kb on - strand, within TX73_021980 at 4785.419 kb on - strand, within TX73_021980 at 4785.428 kb on - strand, within TX73_021980 at 4785.443 kb on + strand, within TX73_021980 at 4785.451 kb on - strand, within TX73_021980 at 4785.481 kb on + strand, within TX73_021980 at 4785.488 kb on - strand, within TX73_021980 at 4785.490 kb on + strand, within TX73_021980 at 4785.490 kb on + strand, within TX73_021980 at 4785.538 kb on + strand, within TX73_021980 at 4785.538 kb on + strand, within TX73_021980
Per-strain Table
Position Strand Gene LocusTag Fraction PM_N2O butyrate and nitrate 0.1 mM remove 4,783,121 + TX73_021970 0.69 -0.2 4,783,129 - TX73_021970 0.69 +0.4 4,783,129 - TX73_021970 0.69 +0.3 4,783,129 - TX73_021970 0.69 +0.4 4,783,171 + TX73_021970 0.71 -0.2 4,783,176 + TX73_021970 0.71 -0.5 4,783,177 - TX73_021970 0.71 -0.2 4,783,178 + TX73_021970 0.71 +0.3 4,783,178 + TX73_021970 0.71 +0.1 4,783,184 - TX73_021970 0.71 +0.3 4,783,184 - TX73_021970 0.71 -0.3 4,783,184 - TX73_021970 0.71 +0.4 4,783,184 - TX73_021970 0.71 +0.6 4,783,184 - TX73_021970 0.71 +0.1 4,783,186 - TX73_021970 0.71 -0.9 4,783,186 - TX73_021970 0.71 -0.4 4,783,197 - TX73_021970 0.72 +0.1 4,783,226 + TX73_021970 0.73 +1.0 4,783,228 + TX73_021970 0.73 -0.4 4,783,236 - TX73_021970 0.73 -0.0 4,783,240 + TX73_021970 0.73 +0.1 4,783,267 + TX73_021970 0.74 +0.0 4,783,272 + TX73_021970 0.74 -0.2 4,783,272 + TX73_021970 0.74 +0.2 4,783,275 - TX73_021970 0.74 -0.3 4,783,275 - TX73_021970 0.74 +0.4 4,783,280 - TX73_021970 0.75 +0.1 4,783,280 - TX73_021970 0.75 -0.1 4,783,280 - TX73_021970 0.75 +1.1 4,783,280 - TX73_021970 0.75 +0.6 4,783,280 - TX73_021970 0.75 +0.3 4,783,280 - TX73_021970 0.75 -0.8 4,783,285 - TX73_021970 0.75 +0.2 4,783,330 + TX73_021970 0.76 +0.1 4,783,335 + TX73_021970 0.77 +0.1 4,783,335 + TX73_021970 0.77 +1.4 4,783,335 + TX73_021970 0.77 -0.6 4,783,345 - TX73_021970 0.77 -0.2 4,783,387 + TX73_021970 0.78 -0.4 4,783,393 - TX73_021970 0.79 -0.4 4,783,436 - TX73_021970 0.80 -0.0 4,783,453 - TX73_021970 0.81 -1.0 4,783,465 + TX73_021970 0.81 -0.6 4,783,558 - TX73_021970 0.85 -0.0 4,783,573 + TX73_021970 0.85 -0.2 4,783,591 - TX73_021970 0.86 +0.1 4,783,646 - TX73_021970 0.88 +0.6 4,783,652 + TX73_021970 0.88 -1.0 4,783,713 + +0.2 4,783,797 + +0.3 4,783,797 + +0.3 4,783,797 + -0.1 4,783,797 + +0.1 4,783,805 - +1.4 4,783,813 + +0.1 4,783,813 + +0.0 4,783,813 + +0.1 4,783,882 - -0.1 4,783,888 + +0.3 4,783,932 + +0.2 4,783,950 - +1.1 4,783,953 - +0.6 4,783,957 + -1.1 4,783,965 + +0.1 4,783,969 + -0.2 4,783,973 - +0.7 4,783,978 - -0.1 4,783,983 - -0.0 4,784,010 + +0.8 4,784,018 - -0.3 4,784,042 + -0.3 4,784,050 - -0.2 4,784,103 - -1.7 4,784,115 + -1.6 4,784,128 - -0.1 4,784,145 + -1.4 4,784,162 + TX73_021975 0.12 -3.0 4,784,175 - TX73_021975 0.15 -3.6 4,784,188 + TX73_021975 0.18 -0.4 4,784,211 + TX73_021975 0.23 -1.1 4,784,225 - TX73_021975 0.26 -2.1 4,784,266 + TX73_021975 0.36 -2.2 4,784,287 - TX73_021975 0.41 -0.8 4,784,328 - TX73_021975 0.50 -1.5 4,784,328 - TX73_021975 0.50 -3.8 4,784,398 + TX73_021975 0.67 -2.0 4,784,411 - TX73_021975 0.70 -2.2 4,784,422 - TX73_021975 0.72 -3.2 4,784,507 - -0.4 4,784,548 - -1.6 4,784,554 - -0.4 4,784,596 - -3.3 4,784,633 + -2.6 4,784,665 - +0.7 4,784,673 + -0.9 4,784,769 - +0.1 4,784,774 - -0.0 4,784,776 + -0.9 4,784,781 + -0.8 4,784,784 - -0.8 4,784,797 - +0.9 4,784,797 - +0.7 4,784,802 + -0.1 4,784,805 - -1.0 4,784,823 + -0.3 4,784,823 + +0.2 4,784,831 - -0.1 4,784,882 - +0.3 4,784,963 + TX73_021980 0.11 +0.6 4,784,973 + TX73_021980 0.11 +1.0 4,784,973 + TX73_021980 0.11 +0.2 4,784,973 + TX73_021980 0.11 -0.3 4,784,981 - TX73_021980 0.12 +0.4 4,784,981 - TX73_021980 0.12 +0.6 4,784,981 - TX73_021980 0.12 -1.1 4,784,981 - TX73_021980 0.12 +0.1 4,784,981 - TX73_021980 0.12 +0.7 4,784,981 - TX73_021980 0.12 +0.2 4,785,011 + TX73_021980 0.14 +0.1 4,785,012 + TX73_021980 0.14 +0.4 4,785,021 - TX73_021980 0.14 +0.4 4,785,021 - TX73_021980 0.14 +1.6 4,785,021 - TX73_021980 0.14 +0.4 4,785,054 - TX73_021980 0.17 -0.2 4,785,062 + TX73_021980 0.17 +1.0 4,785,084 - TX73_021980 0.19 -0.1 4,785,094 - TX73_021980 0.19 +0.3 4,785,118 + TX73_021980 0.21 -0.3 4,785,118 + TX73_021980 0.21 -0.2 4,785,149 - TX73_021980 0.23 -0.1 4,785,151 - TX73_021980 0.23 +0.4 4,785,159 + TX73_021980 0.23 -0.1 4,785,167 + TX73_021980 0.24 -0.4 4,785,171 - TX73_021980 0.24 -0.4 4,785,192 + TX73_021980 0.25 +0.4 4,785,192 + TX73_021980 0.25 +0.1 4,785,192 + TX73_021980 0.25 +0.9 4,785,192 + TX73_021980 0.25 +0.0 4,785,192 + TX73_021980 0.25 +0.4 4,785,192 + TX73_021980 0.25 -0.6 4,785,192 + TX73_021980 0.25 +0.2 4,785,192 + TX73_021980 0.25 +1.0 4,785,192 + TX73_021980 0.25 -0.2 4,785,192 + TX73_021980 0.25 +0.1 4,785,192 + TX73_021980 0.25 +0.5 4,785,192 + TX73_021980 0.25 -0.2 4,785,192 + TX73_021980 0.25 -0.6 4,785,192 + TX73_021980 0.25 +0.9 4,785,192 + TX73_021980 0.25 +0.2 4,785,192 + TX73_021980 0.25 +0.4 4,785,192 + TX73_021980 0.25 +0.1 4,785,192 + TX73_021980 0.25 +0.1 4,785,192 + TX73_021980 0.25 +0.5 4,785,192 + TX73_021980 0.25 -0.2 4,785,192 + TX73_021980 0.25 +1.0 4,785,200 - TX73_021980 0.26 +0.3 4,785,200 - TX73_021980 0.26 +0.1 4,785,200 - TX73_021980 0.26 +0.4 4,785,200 - TX73_021980 0.26 -0.4 4,785,200 - TX73_021980 0.26 -0.2 4,785,200 - TX73_021980 0.26 +0.4 4,785,200 - TX73_021980 0.26 +0.3 4,785,200 - TX73_021980 0.26 +0.4 4,785,200 - TX73_021980 0.26 +0.8 4,785,200 - TX73_021980 0.26 -0.1 4,785,200 - TX73_021980 0.26 -0.0 4,785,200 - TX73_021980 0.26 -0.1 4,785,200 - TX73_021980 0.26 +0.4 4,785,200 - TX73_021980 0.26 -0.1 4,785,200 - TX73_021980 0.26 +0.5 4,785,200 - TX73_021980 0.26 +0.6 4,785,200 - TX73_021980 0.26 -0.3 4,785,200 - TX73_021980 0.26 +0.1 4,785,200 - TX73_021980 0.26 +0.9 4,785,200 - TX73_021980 0.26 +0.0 4,785,200 - TX73_021980 0.26 +0.2 4,785,205 - TX73_021980 0.26 +0.1 4,785,210 - TX73_021980 0.27 +0.4 4,785,210 - TX73_021980 0.27 -0.2 4,785,243 - TX73_021980 0.29 +0.3 4,785,249 - TX73_021980 0.29 +0.8 4,785,261 + TX73_021980 0.30 -0.1 4,785,265 + TX73_021980 0.30 +0.9 4,785,265 + TX73_021980 0.30 +0.5 4,785,271 - TX73_021980 0.31 -0.2 4,785,271 - TX73_021980 0.31 -1.2 4,785,271 - TX73_021980 0.31 +0.6 4,785,273 - TX73_021980 0.31 +0.3 4,785,290 + TX73_021980 0.32 +0.4 4,785,293 - TX73_021980 0.32 +0.3 4,785,363 - TX73_021980 0.36 -0.7 4,785,374 + TX73_021980 0.37 -0.0 4,785,396 + TX73_021980 0.39 -0.4 4,785,401 + TX73_021980 0.39 -0.1 4,785,404 - TX73_021980 0.39 -0.0 4,785,419 - TX73_021980 0.40 +0.4 4,785,428 - TX73_021980 0.41 +0.3 4,785,443 + TX73_021980 0.42 +0.2 4,785,451 - TX73_021980 0.42 -0.6 4,785,481 + TX73_021980 0.44 -0.1 4,785,488 - TX73_021980 0.44 -0.2 4,785,490 + TX73_021980 0.45 +0.1 4,785,490 + TX73_021980 0.45 +0.5 4,785,538 + TX73_021980 0.48 -0.2 4,785,538 + TX73_021980 0.48 -0.7
Or see this region's nucleotide sequence