Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_016375

Experiment: PM_N2O butyrate and nitrate 0.1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM_N2O butyrate and nitrate 0.1 mM
3,573,098	+		TX73_016365	0.64	-0.2
3,573,111	+		TX73_016365	0.65	-0.3
3,573,119	-		TX73_016365	0.66	-0.2
3,573,119	-		TX73_016365	0.66	+0.4
3,573,119	-		TX73_016365	0.66	+0.4
3,573,119	-		TX73_016365	0.66	-0.1
3,573,119	-		TX73_016365	0.66	-0.0
3,573,131	+		TX73_016365	0.67	+0.3
3,573,133	-		TX73_016365	0.67	+1.9
3,573,148	+		TX73_016365	0.68	+0.6
3,573,159	+		TX73_016365	0.69	+0.3
3,573,167	-		TX73_016365	0.69	+0.3
3,573,167	-		TX73_016365	0.69	+0.1
3,573,175	+		TX73_016365	0.70	+0.7
3,573,179	+		TX73_016365	0.70	+0.9
3,573,200	+		TX73_016365	0.72	+0.6
3,573,200	+		TX73_016365	0.72	+0.8
3,573,208	-		TX73_016365	0.72	+0.7
3,573,212	+		TX73_016365	0.73	-0.2
3,573,220	-		TX73_016365	0.73	+0.3
3,573,220	-		TX73_016365	0.73	+0.4
3,573,220	-		TX73_016365	0.73	+0.1
3,573,220	-		TX73_016365	0.73	-0.1
3,573,221	-		TX73_016365	0.73	+0.7
3,573,223	+		TX73_016365	0.74	+1.1
3,573,267	+		TX73_016365	0.77	-0.3
3,573,270	-		TX73_016365	0.77	+0.3
3,573,278	+		TX73_016365	0.78	+0.6
3,573,278	+		TX73_016365	0.78	-0.1
3,573,305	+		TX73_016365	0.80	+0.4
3,573,388	+		TX73_016365	0.86	-0.1
3,573,390	-		TX73_016365	0.86	-0.6
3,573,442	+				+0.2
3,573,443	+				+0.7
3,573,444	+				-0.3
3,573,485	+				-0.0
3,573,493	-				+0.5
3,573,495	+				+0.3
3,573,495	+				-0.1
3,573,495	+				+0.2
3,573,495	+				-0.3
3,573,503	-				+0.7
3,573,506	+				+0.4
3,573,514	-				-0.6
3,573,514	-				-1.3
3,573,515	+				+0.6
3,573,515	+				-0.3
3,573,516	+				-0.4
3,573,516	+				-0.2
3,573,516	+				-0.3
3,573,516	+				-0.3
3,573,523	-				-0.2
3,573,523	-				+0.0
3,573,523	-				-0.6
3,573,524	-				+0.8
3,573,524	-				-0.9
3,573,524	-				+0.2
3,573,524	-				+0.2
3,573,549	+				+0.0
3,573,568	-				+0.2
3,573,576	-				-0.8
3,573,653	+				+0.1
3,573,695	+				+0.2
3,573,700	+		TX73_016370	0.10	-1.3
3,573,703	-		TX73_016370	0.11	-0.3
3,573,703	-		TX73_016370	0.11	-1.9
3,573,707	+		TX73_016370	0.12	-0.3
3,573,730	+		TX73_016370	0.17	-0.8
3,573,756	+		TX73_016370	0.23	-0.9
3,573,762	-		TX73_016370	0.25	+0.3
3,573,773	+		TX73_016370	0.27	-0.1
3,573,778	+		TX73_016370	0.28	-1.6
3,573,778	+		TX73_016370	0.28	-1.5
3,573,778	+		TX73_016370	0.28	+0.3
3,573,778	+		TX73_016370	0.28	-0.8
3,573,779	-		TX73_016370	0.29	-1.6
3,573,781	-		TX73_016370	0.29	-0.3
3,573,786	-		TX73_016370	0.30	-1.1
3,573,786	-		TX73_016370	0.30	-2.5
3,573,786	-		TX73_016370	0.30	-2.4
3,573,786	-		TX73_016370	0.30	-1.5
3,573,786	-		TX73_016370	0.30	-2.2
3,573,786	-		TX73_016370	0.30	-1.1
3,573,786	-		TX73_016370	0.30	-1.6
3,573,786	-		TX73_016370	0.30	-1.6
3,573,788	+		TX73_016370	0.31	+0.1
3,573,788	+		TX73_016370	0.31	+0.4
3,573,788	+		TX73_016370	0.31	+0.1
3,573,793	+		TX73_016370	0.32	-0.2
3,573,793	+		TX73_016370	0.32	+0.0
3,573,793	+		TX73_016370	0.32	-0.4
3,573,793	+		TX73_016370	0.32	+0.2
3,573,793	+		TX73_016370	0.32	-0.2
3,573,796	-		TX73_016370	0.33	+0.5
3,573,801	-		TX73_016370	0.34	+0.5
3,573,801	-		TX73_016370	0.34	+0.9
3,573,801	-		TX73_016370	0.34	-0.1
3,573,832	-		TX73_016370	0.41	-0.5
3,573,846	+		TX73_016370	0.44	-1.0
3,573,879	+		TX73_016370	0.52	-0.4
3,573,951	-		TX73_016370	0.69	-2.0
3,573,959	+		TX73_016370	0.70	-0.7
3,573,967	-		TX73_016370	0.72	-0.7
3,573,977	+		TX73_016370	0.75	+0.1
3,574,003	+		TX73_016370	0.81	-0.9
3,574,003	+		TX73_016370	0.81	+0.6
3,574,011	-		TX73_016370	0.82	+0.0
3,574,011	-		TX73_016370	0.82	-0.9
3,574,011	-		TX73_016370	0.82	-1.5
3,574,054	-				+1.2
3,574,078	+				-0.5
3,574,080	+				+0.1
3,574,080	+				-0.6
3,574,088	-				+0.2
3,574,091	+				+0.1
3,574,092	-				+0.2
3,574,103	+				+0.7
3,574,111	-				-0.1
3,574,127	-				-0.6
3,574,138	+		TX73_016375	0.11	-0.2
3,574,148	+		TX73_016375	0.13	+0.9
3,574,171	+		TX73_016375	0.18	+0.6
3,574,179	-		TX73_016375	0.20	+0.4
3,574,185	+		TX73_016375	0.21	+0.3
3,574,185	+		TX73_016375	0.21	+0.1
3,574,185	+		TX73_016375	0.21	-0.4
3,574,190	-		TX73_016375	0.23	-0.6
3,574,191	-		TX73_016375	0.23	+0.4
3,574,193	-		TX73_016375	0.23	-0.7
3,574,193	-		TX73_016375	0.23	+0.4
3,574,193	-		TX73_016375	0.23	-0.2
3,574,204	+		TX73_016375	0.26	-0.1
3,574,204	+		TX73_016375	0.26	+0.1
3,574,204	+		TX73_016375	0.26	-0.2
3,574,204	+		TX73_016375	0.26	-0.4
3,574,204	+		TX73_016375	0.26	-0.7
3,574,204	+		TX73_016375	0.26	-0.9
3,574,210	-		TX73_016375	0.27	+0.5
3,574,212	-		TX73_016375	0.27	+0.3
3,574,212	-		TX73_016375	0.27	-1.3
3,574,212	-		TX73_016375	0.27	-0.7
3,574,212	-		TX73_016375	0.27	-0.2
3,574,212	-		TX73_016375	0.27	+0.8
3,574,212	-		TX73_016375	0.27	+0.8
3,574,236	-		TX73_016375	0.32	-0.2
3,574,238	+		TX73_016375	0.33	-0.2
3,574,238	+		TX73_016375	0.33	-0.6
3,574,238	+		TX73_016375	0.33	+1.2
3,574,240	+		TX73_016375	0.33	+0.1
3,574,240	+		TX73_016375	0.33	-1.7
3,574,246	+		TX73_016375	0.35	+0.3
3,574,248	+		TX73_016375	0.35	+0.1
3,574,258	+		TX73_016375	0.37	+0.1
3,574,259	-		TX73_016375	0.37	+0.6
3,574,261	-		TX73_016375	0.38	-0.7
3,574,266	-		TX73_016375	0.39	-0.0
3,574,266	-		TX73_016375	0.39	+0.6
3,574,290	-		TX73_016375	0.44	-0.5
3,574,298	-		TX73_016375	0.46	-0.4
3,574,329	-		TX73_016375	0.53	-0.1
3,574,338	+		TX73_016375	0.55	-0.7
3,574,347	+		TX73_016375	0.56	-1.9
3,574,355	-		TX73_016375	0.58	-0.3
3,574,355	-		TX73_016375	0.58	-0.3
3,574,360	+		TX73_016375	0.59	+0.4
3,574,368	-		TX73_016375	0.61	-0.7
3,574,370	+		TX73_016375	0.61	-0.1
3,574,370	-		TX73_016375	0.61	-0.6
3,574,389	+		TX73_016375	0.66	+0.1
3,574,397	-		TX73_016375	0.67	-0.1
3,574,409	+		TX73_016375	0.70	+0.0
3,574,415	-		TX73_016375	0.71	+0.4
3,574,416	-		TX73_016375	0.71	+0.2
3,574,426	+		TX73_016375	0.74	-0.3
3,574,469	-		TX73_016375	0.83	-1.3
3,574,469	-		TX73_016375	0.83	+0.7
3,574,474	-		TX73_016375	0.84	+0.3
3,574,481	+		TX73_016375	0.85	-0.9
3,574,489	-		TX73_016375	0.87	+0.6
3,574,496	+		TX73_016375	0.89	-0.0
3,574,510	+				+1.5
3,574,525	+				-0.1
3,574,531	+				+0.1
3,574,594	-				+0.3
3,574,605	-				+0.0
3,574,616	-				+0.6
3,574,617	+				+0.7
3,574,656	-				+0.3
3,574,749	-				+0.2
3,574,770	-				+0.2
3,574,813	+				+0.3
3,574,821	-				+0.2
3,574,828	+				+0.4
3,574,831	-				+1.0
3,574,836	-				-0.1
3,574,836	-				-0.4
3,574,836	-				-0.3
3,574,859	-		TX73_016385	0.16	+0.7
3,574,867	+		TX73_016385	0.19	+0.9
3,574,888	+		TX73_016385	0.28	+1.1
3,574,894	+		TX73_016385	0.30	+1.3
3,574,902	-		TX73_016385	0.34	+1.4
3,574,925	+		TX73_016385	0.43	+1.1
3,574,926	+		TX73_016385	0.44	+1.2
3,574,933	-		TX73_016385	0.47	+1.1
3,574,934	-		TX73_016385	0.47	+1.1
3,574,941	+		TX73_016385	0.50	+1.5
3,574,959	-		TX73_016385	0.57	+1.0
3,574,977	-		TX73_016385	0.65	+1.2
3,574,982	+		TX73_016385	0.67	+0.7
3,574,990	-		TX73_016385	0.70	+1.1
3,575,002	+		TX73_016385	0.75	+1.1
3,575,010	-		TX73_016385	0.78	+0.7
3,575,020	-		TX73_016385	0.82	+1.3
3,575,020	-		TX73_016385	0.82	+0.9
3,575,066	+				+0.7
3,575,070	-				+0.4
3,575,088	-				+1.6
3,575,103	-				+0.7
3,575,109	-				+0.5
3,575,113	+				+0.1
3,575,164	+				-0.2
3,575,172	-				-0.2
3,575,174	+				+0.7
3,575,174	+				-0.1
3,575,182	-				-0.1
3,575,182	-				-0.1
3,575,182	-				-0.3
3,575,182	-				-0.4
3,575,310	+		TX73_016390	0.25	+0.6
3,575,313	+		TX73_016390	0.25	+2.2
3,575,313	-		TX73_016390	0.25	+0.6
3,575,342	-		TX73_016390	0.29	+3.8
3,575,417	+		TX73_016390	0.39	+1.2
3,575,502	+		TX73_016390	0.51	+1.6