Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011125

Experiment: PM_N2O butyrate and nitrate 0.1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM_N2O butyrate and nitrate 0.1 mM
2,428,274	-		TX73_011115	0.82	-0.4
2,428,274	-		TX73_011115	0.82	+0.7
2,428,316	+		TX73_011115	0.85	+0.2
2,428,317	+		TX73_011115	0.85	+0.2
2,428,321	+		TX73_011115	0.85	+0.6
2,428,326	+		TX73_011115	0.86	+0.6
2,428,339	-		TX73_011115	0.86	-0.2
2,428,357	-		TX73_011115	0.87	+0.1
2,428,364	-		TX73_011115	0.88	+1.2
2,428,365	-		TX73_011115	0.88	-0.3
2,428,379	+		TX73_011115	0.89	-0.7
2,428,379	+		TX73_011115	0.89	+0.2
2,428,379	+		TX73_011115	0.89	-0.1
2,428,387	-		TX73_011115	0.89	+0.0
2,428,437	+				+0.4
2,428,437	+				+0.4
2,428,445	-				+0.4
2,428,462	+				-0.5
2,428,462	+				-0.1
2,428,487	+				-0.3
2,428,492	-				-0.1
2,428,492	-				-0.3
2,428,494	+				-0.7
2,428,505	+				+0.3
2,428,505	-				+0.3
2,428,518	-				-0.0
2,428,521	-				-1.6
2,428,522	+				+0.2
2,428,560	+				+0.1
2,428,608	-		TX73_011120	0.11	-1.1
2,428,624	-		TX73_011120	0.17	+0.3
2,428,659	+		TX73_011120	0.29	+0.5
2,428,675	-		TX73_011120	0.35	-0.1
2,428,719	-		TX73_011120	0.51	-0.2
2,428,721	+		TX73_011120	0.52	-0.4
2,428,729	-		TX73_011120	0.54	+0.4
2,428,729	-		TX73_011120	0.54	-0.6
2,428,734	-		TX73_011120	0.56	+0.5
2,428,737	+		TX73_011120	0.57	+0.1
2,428,739	-		TX73_011120	0.58	+0.1
2,428,739	-		TX73_011120	0.58	-0.4
2,428,740	-		TX73_011120	0.58	-0.2
2,428,740	-		TX73_011120	0.58	+0.0
2,428,745	-		TX73_011120	0.60	-0.1
2,428,769	+		TX73_011120	0.69	+2.6
2,428,769	+		TX73_011120	0.69	-0.4
2,428,770	-		TX73_011120	0.69	+0.3
2,428,770	-		TX73_011120	0.69	+0.3
2,428,777	-		TX73_011120	0.72	-0.3
2,428,777	-		TX73_011120	0.72	-0.4
2,428,807	+		TX73_011120	0.82	+0.1
2,428,827	-		TX73_011120	0.90	-0.9
2,428,848	+				-0.2
2,428,890	-				-1.0
2,428,902	-				-0.3
2,428,909	-				-0.1
2,428,918	+				+0.3
2,428,926	-				-0.8
2,428,944	+				-0.5
2,428,954	-				-0.6
2,428,970	+				-0.1
2,428,980	+				-0.3
2,428,980	+				-0.2
2,428,987	-				+0.5
2,428,988	-				-0.2
2,428,990	+				-0.4
2,428,998	-				-0.8
2,428,998	-				-0.4
2,429,005	+				+0.3
2,429,005	+				-0.5
2,429,005	+				-0.2
2,429,005	+				-0.1
2,429,005	+				+0.0
2,429,005	+				+0.0
2,429,005	+				-0.2
2,429,005	+				-0.2
2,429,005	+				-0.2
2,429,005	+				+0.0
2,429,013	-				+0.5
2,429,013	-				+0.6
2,429,013	-				+0.9
2,429,013	-				-0.6
2,429,027	-				+0.5
2,429,029	+				-0.3
2,429,108	+				+0.1
2,429,179	+				-0.0
2,429,184	+				-0.7
2,429,187	-				-0.1
2,429,187	-				+0.6
2,429,187	-				-0.3
2,429,187	-				+0.1
2,429,187	-				-0.9
2,429,201	-				-0.4
2,429,207	+				-0.9
2,429,215	-				-0.3
2,429,218	+				-1.4
2,429,253	+				-0.3
2,429,297	-				+0.1
2,429,300	-				+0.6
2,429,306	+				-0.2
2,429,347	-				+0.5
2,429,349	+				+0.3
2,429,366	+				+0.7
2,429,374	+		TX73_011125	0.10	+0.5
2,429,382	-		TX73_011125	0.11	-0.6
2,429,387	-		TX73_011125	0.11	+0.6
2,429,400	+		TX73_011125	0.12	+0.4
2,429,424	-		TX73_011125	0.14	+0.5
2,429,444	-		TX73_011125	0.16	+0.6
2,429,453	-		TX73_011125	0.17	+0.3
2,429,462	+		TX73_011125	0.17	+0.1
2,429,486	-		TX73_011125	0.19	+0.4
2,429,562	+		TX73_011125	0.26	+1.7
2,429,568	-		TX73_011125	0.26	-1.1
2,429,587	+		TX73_011125	0.28	+0.2
2,429,597	+		TX73_011125	0.29	+0.7
2,429,610	+		TX73_011125	0.30	+0.7
2,429,626	-		TX73_011125	0.31	+0.3
2,429,634	-		TX73_011125	0.32	+0.4
2,429,637	+		TX73_011125	0.32	+1.1
2,429,637	+		TX73_011125	0.32	+0.4
2,429,642	+		TX73_011125	0.32	-0.1
2,429,645	-		TX73_011125	0.33	-0.1
2,429,650	-		TX73_011125	0.33	-0.3
2,429,657	+		TX73_011125	0.34	+0.5
2,429,660	-		TX73_011125	0.34	-0.2
2,429,663	-		TX73_011125	0.34	+0.4
2,429,665	-		TX73_011125	0.34	+0.5
2,429,665	-		TX73_011125	0.34	+0.4
2,429,665	-		TX73_011125	0.34	+1.1
2,429,675	-		TX73_011125	0.35	+0.8
2,429,675	-		TX73_011125	0.35	+0.2
2,429,680	-		TX73_011125	0.36	+1.1
2,429,696	+		TX73_011125	0.37	+1.1
2,429,764	-		TX73_011125	0.43	+1.9
2,429,771	-		TX73_011125	0.43	+0.3
2,429,808	-		TX73_011125	0.46	+0.1
2,429,846	+		TX73_011125	0.49	-0.5
2,429,875	+		TX73_011125	0.52	-0.3
2,429,875	+		TX73_011125	0.52	-0.2
2,429,876	-		TX73_011125	0.52	+0.9
2,429,883	-		TX73_011125	0.53	+0.7
2,429,884	-		TX73_011125	0.53	+0.4
2,429,890	+		TX73_011125	0.53	-0.4
2,429,898	-		TX73_011125	0.54	-0.5
2,429,901	-		TX73_011125	0.54	+0.3
2,429,925	-		TX73_011125	0.56	+1.3
2,429,925	-		TX73_011125	0.56	+0.8
2,429,925	-		TX73_011125	0.56	-0.6
2,429,932	-		TX73_011125	0.57	+1.5
2,429,937	-		TX73_011125	0.57	+0.6
2,429,944	-		TX73_011125	0.58	+0.5
2,429,959	-		TX73_011125	0.59	+0.6
2,429,964	+		TX73_011125	0.59	+0.7
2,429,973	+		TX73_011125	0.60	+0.6
2,429,999	+		TX73_011125	0.62	+0.2
2,429,999	+		TX73_011125	0.62	+0.4
2,429,999	-		TX73_011125	0.62	+0.4
2,430,009	+		TX73_011125	0.63	+0.6
2,430,028	+		TX73_011125	0.65	-0.2
2,430,028	+		TX73_011125	0.65	-0.1
2,430,039	+		TX73_011125	0.66	+0.3
2,430,090	-		TX73_011125	0.70	+1.1
2,430,090	-		TX73_011125	0.70	+1.2
2,430,102	+		TX73_011125	0.71	+0.3
2,430,103	+		TX73_011125	0.71	+0.2
2,430,113	-		TX73_011125	0.72	+0.1
2,430,129	+		TX73_011125	0.73	-0.4
2,430,167	+		TX73_011125	0.76	+0.4
2,430,172	+		TX73_011125	0.77	+0.1
2,430,172	+		TX73_011125	0.77	+1.0
2,430,175	-		TX73_011125	0.77	+0.3
2,430,180	-		TX73_011125	0.77	-2.3
2,430,180	-		TX73_011125	0.77	+0.3
2,430,180	-		TX73_011125	0.77	+0.6
2,430,197	+		TX73_011125	0.79	-0.9
2,430,205	-		TX73_011125	0.79	+0.6
2,430,213	+		TX73_011125	0.80	+0.6
2,430,221	+		TX73_011125	0.81	-0.3
2,430,221	-		TX73_011125	0.81	+0.3
2,430,221	-		TX73_011125	0.81	-0.1
2,430,243	+		TX73_011125	0.83	+0.0
2,430,251	-		TX73_011125	0.83	+0.9
2,430,274	-		TX73_011125	0.85	+0.6
2,430,278	-		TX73_011125	0.86	+0.7
2,430,319	+		TX73_011125	0.89	+0.4
2,430,327	-		TX73_011125	0.90	+0.4
2,430,332	-				+0.8
2,430,332	-				+0.6
2,430,351	+				+1.2
2,430,359	-				-0.2
2,430,378	+				+0.3
2,430,378	+				-0.5
2,430,386	-				+0.9
2,430,422	-				+0.4
2,430,423	-				+1.1
2,430,423	-				+0.6
2,430,440	-				-1.2
2,430,441	+				+0.5
2,430,444	+				-0.8
2,430,454	+				+0.3
2,430,454	+				-0.4
2,430,460	-				-0.3
2,430,462	-				-0.9
2,430,462	-				+0.5
2,430,474	+				-0.7
2,430,481	+				+0.3
2,430,482	-				+0.8
2,430,508	+				+0.2
2,430,552	+				-0.2
2,430,560	-				-0.4
2,430,590	+				+0.6
2,430,590	+				-0.8
2,430,590	+				-0.1
2,430,590	+				+0.1
2,430,591	-				-1.0
2,430,591	-				-0.1
2,430,597	-				+0.4
2,430,598	-				-0.1
2,430,600	+				+0.9
2,430,604	+				-0.1
2,430,654	+		TX73_011130	0.21	-0.2
2,430,655	+		TX73_011130	0.21	+0.3
2,430,655	+		TX73_011130	0.21	+0.5
2,430,660	+		TX73_011130	0.22	-1.0
2,430,662	-		TX73_011130	0.23	-0.5
2,430,665	+		TX73_011130	0.24	-0.2
2,430,668	-		TX73_011130	0.25	-0.3
2,430,668	-		TX73_011130	0.25	+0.9
2,430,668	-		TX73_011130	0.25	-0.4
2,430,673	-		TX73_011130	0.26	-0.6
2,430,726	-		TX73_011130	0.42	+0.2
2,430,739	+		TX73_011130	0.46	-0.0
2,430,740	-		TX73_011130	0.47	-0.1
2,430,766	-		TX73_011130	0.55	-1.2
2,430,785	+		TX73_011130	0.60	-0.2
2,430,785	+		TX73_011130	0.60	-0.1
2,430,789	-		TX73_011130	0.62	+0.9
2,430,791	-		TX73_011130	0.62	-0.7
2,430,793	-		TX73_011130	0.63	+0.2
2,430,793	-		TX73_011130	0.63	+0.7
2,430,793	-		TX73_011130	0.63	-2.3
2,430,793	-		TX73_011130	0.63	-0.5
2,430,793	-		TX73_011130	0.63	-0.3
2,430,793	-		TX73_011130	0.63	-0.9
2,430,795	+		TX73_011130	0.63	-0.1
2,430,798	-		TX73_011130	0.64	+0.4
2,430,802	+		TX73_011130	0.65	+0.1
2,430,803	-		TX73_011130	0.66	-0.2
2,430,819	+		TX73_011130	0.71	+0.4
2,430,853	+		TX73_011130	0.81	+1.0
2,430,853	+		TX73_011130	0.81	-0.2
2,430,859	-		TX73_011130	0.83	-0.3
2,430,861	-		TX73_011130	0.83	+1.4
2,430,877	+		TX73_011130	0.88	-0.5
2,430,885	-				-0.1
2,430,890	-				-0.3
2,430,890	-				-0.4
2,430,899	+				+0.1
2,430,911	+				+0.8
2,430,933	+				-0.5
2,430,936	+				-0.1
2,430,951	+				-0.2
2,431,011	+				+0.4
2,431,019	-				-0.3
2,431,043	-				-0.3
2,431,044	+				+0.2
2,431,055	+		TX73_011135	0.11	+0.6
2,431,063	-		TX73_011135	0.15	-0.2
2,431,086	+		TX73_011135	0.24	+1.0
2,431,086	+		TX73_011135	0.24	-0.4
2,431,092	-		TX73_011135	0.26	+0.0
2,431,092	-		TX73_011135	0.26	+0.4
2,431,096	+		TX73_011135	0.27	-0.1
2,431,096	+		TX73_011135	0.27	+0.5
2,431,096	+		TX73_011135	0.27	+0.1
2,431,101	+		TX73_011135	0.29	+0.4
2,431,104	-		TX73_011135	0.31	-0.1
2,431,104	-		TX73_011135	0.31	+0.7
2,431,109	-		TX73_011135	0.33	-0.5
2,431,109	-		TX73_011135	0.33	+0.1
2,431,109	-		TX73_011135	0.33	+0.3
2,431,135	+		TX73_011135	0.43	+1.0
2,431,135	+		TX73_011135	0.43	-0.2
2,431,135	+		TX73_011135	0.43	+0.7
2,431,143	-		TX73_011135	0.46	+0.5
2,431,143	-		TX73_011135	0.46	+0.6
2,431,143	-		TX73_011135	0.46	-0.1
2,431,143	-		TX73_011135	0.46	+0.3
2,431,143	-		TX73_011135	0.46	+0.6
2,431,143	-		TX73_011135	0.46	+0.2
2,431,148	-		TX73_011135	0.48	-0.3
2,431,148	-		TX73_011135	0.48	-0.1
2,431,148	-		TX73_011135	0.48	+0.2
2,431,202	+		TX73_011135	0.69	+0.2
2,431,212	+		TX73_011135	0.73	+0.3
2,431,212	+		TX73_011135	0.73	-0.1
2,431,215	-		TX73_011135	0.74	+0.4
2,431,220	-		TX73_011135	0.76	+0.0
2,431,222	-		TX73_011135	0.77	+0.3
2,431,222	-		TX73_011135	0.77	+0.7
2,431,227	-		TX73_011135	0.79	-0.6
2,431,227	-		TX73_011135	0.79	+0.5
2,431,227	-		TX73_011135	0.79	-0.6
2,431,237	+		TX73_011135	0.83	+0.0
2,431,237	-		TX73_011135	0.83	-0.8
2,431,283	-				+1.8
2,431,284	+				+0.1
2,431,306	+				+0.6
2,431,306	-				+0.1
2,431,317	+				+1.2
2,431,403	+				+0.7
2,431,403	+				-0.2
2,431,403	+				+0.2
2,431,403	+				+0.5
2,431,411	-				+0.3
2,431,411	-				-0.8
2,431,411	-				+0.1
2,431,411	-				+0.6
2,431,411	-				-0.8
2,431,411	-				-0.1
2,431,418	+				+0.9
2,431,428	-				-0.8
2,431,448	-				+0.5