Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_007900

Experiment: PM_N2O butyrate and nitrate 0.1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM_N2O butyrate and nitrate 0.1 mM
1,702,848	+		TX73_007890	0.58	-0.7
1,702,886	+		TX73_007890	0.72	+0.5
1,702,889	+		TX73_007890	0.73	-0.0
1,702,893	-		TX73_007890	0.74	+0.3
1,702,901	+		TX73_007890	0.77	+0.3
1,702,901	+		TX73_007890	0.77	-0.1
1,702,907	+		TX73_007890	0.79	-0.5
1,702,933	-		TX73_007890	0.89	+1.4
1,702,988	-				-0.1
1,702,998	-				-0.4
1,703,001	+				-0.4
1,703,009	-				-0.4
1,703,015	-				-0.5
1,703,025	-				+0.3
1,703,545	+				-0.4
1,703,553	-				-0.7
1,703,599	+				+0.2
1,703,610	-				-1.9
1,703,621	+				+0.1
1,703,623	+				+0.6
1,703,629	-				+0.3
1,703,631	-				+0.1
1,703,631	-				+0.5
1,703,644	-				-0.4
1,703,668	-				-0.8
1,703,735	+				-1.7
1,703,743	-				-0.7
1,703,743	-				-1.7
1,703,752	-				-1.5
1,703,757	-				-2.0
1,703,760	+				-1.6
1,703,768	-				-1.5
1,703,780	+				-2.2
1,703,780	+				-3.1
1,703,780	+				-1.5
1,703,783	-				-2.0
1,703,788	-				-2.4
1,703,788	-				-1.5
1,703,788	-				-2.4
1,703,792	+				-1.2
1,703,826	+				+0.1
1,703,840	+				-1.7
1,703,841	-				-1.1
1,703,856	+				-2.3
1,703,863	+				-3.3
1,703,869	-				-3.3
1,703,871	-				-2.0
1,703,873	+				-0.6
1,703,900	+				-1.5
1,703,902	-				-3.2
1,703,912	-				-3.5
1,703,926	+				-2.4
1,703,934	+				-0.8
1,703,939	+				-2.4
1,703,946	-				-1.4
1,703,989	+		TX73_007900	0.11	-0.1
1,704,025	+		TX73_007900	0.14	-3.5
1,704,034	-		TX73_007900	0.15	-0.6
1,704,068	-		TX73_007900	0.17	-2.2
1,704,102	-		TX73_007900	0.19	-1.7
1,704,129	+		TX73_007900	0.21	-2.2
1,704,169	-		TX73_007900	0.24	-2.2
1,704,181	-		TX73_007900	0.25	-0.5
1,704,211	-		TX73_007900	0.27	-0.1
1,704,249	-		TX73_007900	0.30	-1.6
1,704,273	-		TX73_007900	0.32	-0.4
1,704,345	+		TX73_007900	0.37	-1.3
1,704,364	-		TX73_007900	0.38	-2.2
1,704,394	+		TX73_007900	0.40	-0.1
1,704,409	+		TX73_007900	0.42	-2.4
1,704,417	-		TX73_007900	0.42	-2.0
1,704,427	-		TX73_007900	0.43	-1.2
1,704,431	-		TX73_007900	0.43	-2.5
1,704,446	-		TX73_007900	0.44	-3.6
1,704,446	-		TX73_007900	0.44	-0.5
1,704,451	-		TX73_007900	0.45	-2.2
1,704,451	-		TX73_007900	0.45	-1.5
1,704,451	-		TX73_007900	0.45	-3.8
1,704,488	+		TX73_007900	0.47	-2.8
1,704,503	+		TX73_007900	0.48	-1.6
1,704,505	+		TX73_007900	0.48	-1.7
1,704,511	-		TX73_007900	0.49	-2.2
1,704,513	-		TX73_007900	0.49	-1.8
1,704,530	+		TX73_007900	0.50	-2.5
1,704,545	+		TX73_007900	0.51	-1.4
1,704,545	+		TX73_007900	0.51	-3.5
1,704,549	-		TX73_007900	0.52	-3.0
1,704,550	+		TX73_007900	0.52	-1.5
1,704,553	-		TX73_007900	0.52	-1.0
1,704,596	-		TX73_007900	0.55	-1.4
1,704,598	+		TX73_007900	0.55	-2.3
1,704,598	+		TX73_007900	0.55	-1.9
1,704,601	-		TX73_007900	0.55	-2.3
1,704,601	-		TX73_007900	0.55	-2.6
1,704,616	-		TX73_007900	0.56	-0.5
1,704,616	-		TX73_007900	0.56	-2.0
1,704,631	-		TX73_007900	0.57	-0.9
1,704,633	-		TX73_007900	0.58	-2.5
1,704,655	+		TX73_007900	0.59	-1.9
1,704,673	+		TX73_007900	0.60	-1.8
1,704,701	-		TX73_007900	0.62	-1.1
1,704,719	-		TX73_007900	0.64	-1.9
1,704,733	-		TX73_007900	0.65	-0.6
1,704,768	+		TX73_007900	0.67	-1.6
1,704,774	-		TX73_007900	0.68	-1.9
1,704,776	-		TX73_007900	0.68	-3.6
1,704,780	-		TX73_007900	0.68	-2.6
1,704,795	+		TX73_007900	0.69	-3.6
1,704,795	+		TX73_007900	0.69	-4.5
1,704,795	+		TX73_007900	0.69	-1.9
1,704,803	-		TX73_007900	0.70	-2.0
1,704,803	-		TX73_007900	0.70	+0.6
1,704,813	+		TX73_007900	0.70	-2.2
1,704,849	+		TX73_007900	0.73	-2.2
1,704,907	-		TX73_007900	0.77	-1.8
1,704,909	+		TX73_007900	0.77	-3.6
1,704,927	+		TX73_007900	0.79	-3.0
1,704,952	+		TX73_007900	0.80	-4.0
1,704,995	-		TX73_007900	0.84	-1.3
1,705,032	-		TX73_007900	0.86	-2.5
1,705,039	+		TX73_007900	0.87	-3.8
1,705,039	-		TX73_007900	0.87	-4.7
1,705,044	+		TX73_007900	0.87	-4.2
1,705,044	-		TX73_007900	0.87	-3.1
1,705,050	+		TX73_007900	0.87	-2.2
1,705,052	-		TX73_007900	0.88	-1.2
1,705,052	-		TX73_007900	0.88	-2.5
1,705,079	-		TX73_007900	0.90	-1.6
1,705,085	-				-2.8
1,705,094	+				-3.2
1,705,102	-				-2.1
1,705,117	-				-2.8
1,705,187	+				-2.6
1,705,190	+				-2.0
1,705,190	+				-2.1
1,705,190	+				-1.9
1,705,198	-				-2.2
1,705,210	-				-2.8
1,705,218	+				+0.0
1,705,218	+				-0.1
1,705,218	+				-0.8
1,705,218	+				+0.5
1,705,219	-				-0.1
1,705,219	-				-2.8
1,705,226	-				+2.3
1,705,231	+				+0.0
1,705,232	+				-0.1
1,705,252	+				-0.4
1,705,317	+				+0.3
1,705,363	+				+0.2
1,705,363	+				+0.6
1,705,363	+				+0.1
1,705,363	+				-0.3
1,705,368	+				-0.6
1,705,371	-				-0.7
1,705,371	-				-0.6
1,705,371	-				-0.6
1,705,376	-				-1.1
1,705,452	-		TX73_007905	0.10	-0.4
1,705,488	-		TX73_007905	0.12	+0.2
1,705,523	+		TX73_007905	0.14	+0.9
1,705,528	+		TX73_007905	0.14	+0.2
1,705,531	+		TX73_007905	0.14	+0.5
1,705,539	-		TX73_007905	0.14	-0.2
1,705,539	-		TX73_007905	0.14	+0.0
1,705,539	-		TX73_007905	0.14	+0.2
1,705,539	-		TX73_007905	0.14	-0.1
1,705,539	-		TX73_007905	0.14	+0.2
1,705,539	-		TX73_007905	0.14	+0.5
1,705,540	+		TX73_007905	0.14	-0.9
1,705,541	+		TX73_007905	0.14	-0.4
1,705,548	-		TX73_007905	0.15	-0.4
1,705,597	-		TX73_007905	0.17	-0.1
1,705,619	-		TX73_007905	0.18	-0.6
1,705,623	+		TX73_007905	0.18	-0.1
1,705,630	+		TX73_007905	0.18	+0.1
1,705,649	-		TX73_007905	0.19	+0.7
1,705,670	+		TX73_007905	0.20	-0.5
1,705,690	+		TX73_007905	0.21	+0.5
1,705,708	-		TX73_007905	0.22	+0.2
1,705,715	-		TX73_007905	0.22	+0.9
1,705,715	-		TX73_007905	0.22	-0.2
1,705,715	-		TX73_007905	0.22	-0.8
1,705,717	+		TX73_007905	0.22	-0.0
1,705,733	-		TX73_007905	0.23	+0.1
1,705,761	-		TX73_007905	0.24	+0.6
1,705,855	-		TX73_007905	0.29	-0.5
1,705,859	+		TX73_007905	0.29	-0.8
1,705,864	+		TX73_007905	0.29	+0.7
1,705,881	-		TX73_007905	0.30	-0.3
1,705,908	-		TX73_007905	0.31	+0.8
1,705,934	-		TX73_007905	0.32	+0.7
1,705,954	+		TX73_007905	0.33	-0.0
1,705,997	+		TX73_007905	0.35	+0.2
1,705,997	+		TX73_007905	0.35	+0.8
1,705,998	-		TX73_007905	0.35	+0.1
1,705,999	+		TX73_007905	0.35	+0.7
1,705,999	+		TX73_007905	0.35	-0.4
1,706,026	-		TX73_007905	0.36	+0.7
1,706,080	-		TX73_007905	0.39	-0.0
1,706,179	+		TX73_007905	0.43	-0.1
1,706,208	-		TX73_007905	0.45	+0.4
1,706,210	+		TX73_007905	0.45	-0.1
1,706,217	+		TX73_007905	0.45	-0.2