Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_024480

Experiment: PM_N2O butyrate and nitrate 0.1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM_N2O butyrate and nitrate 0.1 mM
5,311,873	+		TX73_024470	0.84	-0.3
5,311,873	+		TX73_024470	0.84	+0.3
5,311,881	-		TX73_024470	0.87	-0.7
5,311,881	-		TX73_024470	0.87	+0.1
5,311,881	-		TX73_024470	0.87	+0.2
5,311,881	-		TX73_024470	0.87	+0.2
5,311,881	-		TX73_024470	0.87	+0.0
5,312,034	+				+0.7
5,312,061	+				-0.2
5,312,066	+				+0.8
5,312,078	+				-0.2
5,312,080	+				+0.1
5,312,084	-				-0.2
5,312,086	-				-0.4
5,312,102	-				+0.3
5,312,143	+		TX73_024475	0.15	-0.4
5,312,203	-		TX73_024475	0.23	-0.7
5,312,221	+		TX73_024475	0.25	+0.4
5,312,228	+		TX73_024475	0.26	+1.0
5,312,238	+		TX73_024475	0.28	-0.3
5,312,239	+		TX73_024475	0.28	+1.7
5,312,247	-		TX73_024475	0.29	+0.4
5,312,297	+		TX73_024475	0.36	+0.8
5,312,387	+		TX73_024475	0.48	+0.1
5,312,395	-		TX73_024475	0.49	-1.3
5,312,428	-		TX73_024475	0.54	+0.2
5,312,430	-		TX73_024475	0.54	+0.1
5,312,447	+		TX73_024475	0.56	-0.6
5,312,455	-		TX73_024475	0.57	+0.0
5,312,498	+		TX73_024475	0.63	-1.1
5,312,498	+		TX73_024475	0.63	+0.2
5,312,498	+		TX73_024475	0.63	-0.1
5,312,498	+		TX73_024475	0.63	-0.0
5,312,498	+		TX73_024475	0.63	-0.0
5,312,498	+		TX73_024475	0.63	+0.1
5,312,506	-		TX73_024475	0.64	+0.3
5,312,506	-		TX73_024475	0.64	+0.5
5,312,506	-		TX73_024475	0.64	+0.2
5,312,506	-		TX73_024475	0.64	+0.4
5,312,506	-		TX73_024475	0.64	-0.3
5,312,506	-		TX73_024475	0.64	+0.7
5,312,506	-		TX73_024475	0.64	-0.1
5,312,506	-		TX73_024475	0.64	-0.6
5,312,575	+		TX73_024475	0.74	-0.1
5,312,636	-		TX73_024475	0.82	+1.0
5,312,652	-		TX73_024475	0.84	+0.5
5,312,714	+				+0.5
5,312,759	+				+0.3
5,312,767	-				+0.3
5,312,770	+				+0.1
5,312,801	+				-0.9
5,312,877	+				-0.3
5,312,886	-				-0.8
5,312,904	+				-0.0
5,312,909	+				-0.2
5,312,912	-				-1.7
5,312,995	-		TX73_024480	0.10	-1.6
5,312,997	+		TX73_024480	0.10	-0.2
5,313,024	+		TX73_024480	0.12	-0.1
5,313,058	-		TX73_024480	0.14	-0.7
5,313,058	-		TX73_024480	0.14	-0.8
5,313,086	-		TX73_024480	0.15	-0.5
5,313,105	-		TX73_024480	0.16	-0.7
5,313,108	+		TX73_024480	0.17	-0.5
5,313,128	-		TX73_024480	0.18	+0.4
5,313,156	+		TX73_024480	0.19	+0.1
5,313,168	+		TX73_024480	0.20	-0.0
5,313,189	+		TX73_024480	0.21	-0.2
5,313,197	-		TX73_024480	0.22	-0.5
5,313,197	-		TX73_024480	0.22	-0.9
5,313,240	+		TX73_024480	0.24	-0.5
5,313,271	-		TX73_024480	0.26	-0.2
5,313,274	+		TX73_024480	0.26	-0.5
5,313,274	+		TX73_024480	0.26	-0.6
5,313,276	-		TX73_024480	0.26	-0.7
5,313,282	-		TX73_024480	0.26	+0.1
5,313,282	-		TX73_024480	0.26	-0.2
5,313,299	-		TX73_024480	0.27	+0.4
5,313,317	-		TX73_024480	0.28	+0.1
5,313,328	+		TX73_024480	0.29	-0.3
5,313,366	-		TX73_024480	0.31	-0.3
5,313,380	+		TX73_024480	0.32	+0.9
5,313,380	+		TX73_024480	0.32	-1.0
5,313,383	-		TX73_024480	0.32	-0.7
5,313,414	+		TX73_024480	0.34	+0.9
5,313,422	-		TX73_024480	0.34	-1.3
5,313,448	+		TX73_024480	0.36	+0.1
5,313,449	+		TX73_024480	0.36	-0.3
5,313,451	-		TX73_024480	0.36	-0.5
5,313,466	+		TX73_024480	0.37	-0.8
5,313,466	-		TX73_024480	0.37	-1.9
5,313,479	+		TX73_024480	0.38	-1.3
5,313,479	+		TX73_024480	0.38	+0.6
5,313,482	-		TX73_024480	0.38	-0.6
5,313,487	-		TX73_024480	0.38	-0.5
5,313,487	-		TX73_024480	0.38	-0.1
5,313,494	-		TX73_024480	0.39	+1.1
5,313,496	+		TX73_024480	0.39	-0.7
5,313,496	+		TX73_024480	0.39	+0.1
5,313,497	+		TX73_024480	0.39	-0.3
5,313,504	-		TX73_024480	0.39	-0.5
5,313,505	-		TX73_024480	0.39	-0.2
5,313,517	-		TX73_024480	0.40	-1.0
5,313,535	+		TX73_024480	0.41	-0.7
5,313,542	+		TX73_024480	0.41	+0.0
5,313,574	-		TX73_024480	0.43	-0.2
5,313,585	+		TX73_024480	0.44	-0.5
5,313,585	+		TX73_024480	0.44	+0.2
5,313,593	-		TX73_024480	0.44	-0.2
5,313,617	-		TX73_024480	0.46	-0.4
5,313,695	+		TX73_024480	0.50	+0.0
5,313,739	+		TX73_024480	0.53	-2.0
5,313,758	+		TX73_024480	0.54	+0.7
5,313,798	-		TX73_024480	0.56	-0.6
5,313,800	+		TX73_024480	0.56	-0.7
5,313,919	+		TX73_024480	0.63	+0.1
5,313,927	+		TX73_024480	0.63	+0.0
5,313,927	-		TX73_024480	0.63	-0.2
5,313,937	+		TX73_024480	0.64	+0.1
5,313,937	+		TX73_024480	0.64	-1.0
5,313,945	+		TX73_024480	0.64	-0.6
5,313,945	-		TX73_024480	0.64	-0.3
5,313,945	-		TX73_024480	0.64	-0.2
5,313,945	-		TX73_024480	0.64	-0.5
5,313,945	-		TX73_024480	0.64	-0.4
5,313,949	+		TX73_024480	0.65	-0.3
5,313,949	+		TX73_024480	0.65	-0.0
5,313,952	-		TX73_024480	0.65	+0.1
5,313,963	-		TX73_024480	0.65	+0.6
5,313,985	-		TX73_024480	0.67	+0.2
5,314,010	+		TX73_024480	0.68	-0.9
5,314,084	+		TX73_024480	0.72	-0.7
5,314,113	-		TX73_024480	0.74	+0.1
5,314,121	+		TX73_024480	0.74	+0.1
5,314,129	-		TX73_024480	0.75	-0.8
5,314,153	+		TX73_024480	0.76	-0.4
5,314,176	-		TX73_024480	0.78	-0.5
5,314,189	+		TX73_024480	0.78	-0.6
5,314,201	-		TX73_024480	0.79	-0.2
5,314,226	+		TX73_024480	0.80	+0.6
5,314,226	+		TX73_024480	0.80	-0.4
5,314,241	+		TX73_024480	0.81	-1.1
5,314,244	-		TX73_024480	0.81	+0.4
5,314,246	+		TX73_024480	0.82	-0.1
5,314,246	+		TX73_024480	0.82	-0.1
5,314,246	+		TX73_024480	0.82	-0.3
5,314,246	+		TX73_024480	0.82	+0.7
5,314,246	+		TX73_024480	0.82	+0.0
5,314,246	+		TX73_024480	0.82	+0.0
5,314,254	-		TX73_024480	0.82	+0.1
5,314,254	-		TX73_024480	0.82	-0.5
5,314,254	-		TX73_024480	0.82	+0.0
5,314,254	-		TX73_024480	0.82	+0.0
5,314,254	-		TX73_024480	0.82	+0.0
5,314,254	-		TX73_024480	0.82	-0.1
5,314,303	+		TX73_024480	0.85	-0.8
5,314,303	+		TX73_024480	0.85	+0.2
5,314,303	+		TX73_024480	0.85	-0.4
5,314,303	+		TX73_024480	0.85	+0.1
5,314,336	+		TX73_024480	0.87	-0.3
5,314,344	-		TX73_024480	0.87	-1.0
5,314,345	-		TX73_024480	0.87	-0.2
5,314,374	+		TX73_024480	0.89	-0.0
5,314,382	-		TX73_024480	0.89	-0.7
5,314,386	-		TX73_024480	0.90	-1.5
5,314,389	+		TX73_024480	0.90	-0.6
5,314,400	+				-0.3
5,314,408	-				-0.0
5,314,411	-				+0.1
5,314,461	+				-1.2
5,314,469	-				+0.3
5,314,483	+				-0.2
5,314,521	-				-0.5
5,314,529	-				-0.2
5,314,529	-				-0.8
5,314,537	+				-0.4
5,314,545	-				-0.1
5,314,546	+				-0.0
5,314,576	-				+0.8
5,314,580	+				-1.1
5,314,588	-				+1.1
5,314,603	+				-0.8
5,314,603	-				+1.5
5,314,644	+				+0.6
5,314,663	-				+1.0
5,314,669	+				-0.7
5,314,692	+				+0.1
5,314,692	+				-0.8
5,314,700	-				+0.8
5,314,756	-				+0.7
5,314,807	+				-2.3
5,314,807	+				-0.4
5,314,807	+				+0.2
5,314,809	+				-0.1
5,314,815	-				-0.8
5,314,815	-				-0.1
5,314,815	-				-0.1
5,314,817	-				-0.2
5,314,821	-				-1.7
5,314,845	+				+0.6
5,314,846	-				-0.1
5,314,918	+		TX73_024485	0.11	-0.8
5,314,927	+		TX73_024485	0.12	-0.1
5,314,943	+		TX73_024485	0.13	+0.1
5,314,943	+		TX73_024485	0.13	-0.7
5,314,943	+		TX73_024485	0.13	-0.4
5,314,943	+		TX73_024485	0.13	-0.1
5,314,943	+		TX73_024485	0.13	+0.0
5,314,951	-		TX73_024485	0.14	-0.4
5,314,951	-		TX73_024485	0.14	-0.4
5,314,951	-		TX73_024485	0.14	+0.2
5,314,951	-		TX73_024485	0.14	-0.1
5,314,951	-		TX73_024485	0.14	-0.2
5,314,951	-		TX73_024485	0.14	-0.1
5,314,951	-		TX73_024485	0.14	-0.4
5,314,952	+		TX73_024485	0.14	+0.2
5,314,960	-		TX73_024485	0.15	-0.9
5,314,966	-		TX73_024485	0.16	-0.7
5,314,989	+		TX73_024485	0.18	-1.8
5,314,989	+		TX73_024485	0.18	+0.0
5,314,997	-		TX73_024485	0.19	+0.1
5,315,013	+		TX73_024485	0.21	-0.3
5,315,021	-		TX73_024485	0.22	-0.3
5,315,044	+		TX73_024485	0.24	+0.3
5,315,052	+		TX73_024485	0.25	+0.7
5,315,052	+		TX73_024485	0.25	-0.1
5,315,052	+		TX73_024485	0.25	-0.8
5,315,055	-		TX73_024485	0.25	-0.3
5,315,060	-		TX73_024485	0.26	+0.5
5,315,060	-		TX73_024485	0.26	-0.3
5,315,060	-		TX73_024485	0.26	-0.5
5,315,060	-		TX73_024485	0.26	-0.2
5,315,060	-		TX73_024485	0.26	-0.9
5,315,064	+		TX73_024485	0.26	-0.8
5,315,069	+		TX73_024485	0.26	-0.7
5,315,113	-		TX73_024485	0.31	-0.9
5,315,145	+		TX73_024485	0.34	-0.6
5,315,163	-		TX73_024485	0.36	-0.9
5,315,180	-		TX73_024485	0.38	-0.2
5,315,188	+		TX73_024485	0.39	-0.3
5,315,196	+		TX73_024485	0.40	-0.3
5,315,207	+		TX73_024485	0.41	+0.1
5,315,231	+		TX73_024485	0.43	-0.5
5,315,239	-		TX73_024485	0.44	-0.8
5,315,249	+		TX73_024485	0.45	-0.2
5,315,249	+		TX73_024485	0.45	-1.6
5,315,275	+		TX73_024485	0.48	-1.2
5,315,275	+		TX73_024485	0.48	-0.7
5,315,279	-		TX73_024485	0.48	+0.4
5,315,279	-		TX73_024485	0.48	-0.6
5,315,294	+		TX73_024485	0.50	-0.7
5,315,302	-		TX73_024485	0.50	-0.5
5,315,326	+		TX73_024485	0.53	-0.1
5,315,343	+		TX73_024485	0.55	-0.9
5,315,349	+		TX73_024485	0.55	-0.0
5,315,349	+		TX73_024485	0.55	-0.4
5,315,349	+		TX73_024485	0.55	-0.8
5,315,351	+		TX73_024485	0.55	+0.3
5,315,357	-		TX73_024485	0.56	+0.2
5,315,369	+		TX73_024485	0.57	-0.4
5,315,437	-		TX73_024485	0.64	+0.3
5,315,442	+		TX73_024485	0.65	-0.3
5,315,442	+		TX73_024485	0.65	+0.0
5,315,445	+		TX73_024485	0.65	-0.5
5,315,450	-		TX73_024485	0.66	-0.9
5,315,468	-		TX73_024485	0.67	-0.0
5,315,473	+		TX73_024485	0.68	-1.0
5,315,481	-		TX73_024485	0.69	-0.5
5,315,487	+		TX73_024485	0.69	-0.2
5,315,524	-		TX73_024485	0.73	-0.5
5,315,526	+		TX73_024485	0.73	-0.7
5,315,528	+		TX73_024485	0.74	-0.5