Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_021450

Experiment: PM_N2O butyrate and nitrate 0.1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM_N2O butyrate and nitrate 0.1 mM
4,678,146	+		TX73_021440	0.76	+1.2
4,678,154	-		TX73_021440	0.76	+0.1
4,678,176	+		TX73_021440	0.78	+0.9
4,678,187	+		TX73_021440	0.78	-0.3
4,678,195	-		TX73_021440	0.79	-0.6
4,678,197	+		TX73_021440	0.79	+0.8
4,678,205	-		TX73_021440	0.79	-0.3
4,678,211	-		TX73_021440	0.80	+0.6
4,678,234	+		TX73_021440	0.81	+0.2
4,678,237	-		TX73_021440	0.81	+0.1
4,678,242	+		TX73_021440	0.82	-0.5
4,678,277	-		TX73_021440	0.84	+0.6
4,678,312	-		TX73_021440	0.86	-0.6
4,678,323	+		TX73_021440	0.87	-0.3
4,678,331	-		TX73_021440	0.87	-0.3
4,678,331	-		TX73_021440	0.87	+0.4
4,678,359	+		TX73_021440	0.89	+0.2
4,678,364	+		TX73_021440	0.90	+0.5
4,678,398	-				-0.4
4,678,402	-				+0.1
4,678,444	-				+0.2
4,678,475	-				-0.0
4,678,490	-				-0.1
4,678,528	-				-0.7
4,678,545	-				-0.7
4,678,561	+				+0.4
4,678,561	+				-0.2
4,678,561	+				-0.0
4,678,569	-				-0.5
4,678,624	-				+0.0
4,678,650	-				+0.1
4,678,655	-				-0.0
4,678,695	-				-2.5
4,678,705	+				+0.1
4,678,708	-				+0.2
4,678,724	+				-0.7
4,678,793	-				-0.1
4,678,823	+				-0.0
4,679,021	+				+0.0
4,679,046	-				-0.8
4,679,055	+				+0.7
4,679,058	+				-0.7
4,679,066	-				-0.3
4,679,092	-				-0.7
4,679,137	-				+0.4
4,679,159	-				-0.1
4,679,166	+				-1.0
4,679,168	-				+0.1
4,679,168	-				+0.2
4,679,168	-				+0.5
4,679,193	-		TX73_021450	0.14	+0.0
4,679,201	-		TX73_021450	0.16	-0.8
4,679,218	+		TX73_021450	0.20	+0.3
4,679,218	+		TX73_021450	0.20	-0.7
4,679,218	+		TX73_021450	0.20	-0.3
4,679,218	+		TX73_021450	0.20	-0.1
4,679,218	+		TX73_021450	0.20	+0.4
4,679,221	+		TX73_021450	0.21	-0.1
4,679,225	+		TX73_021450	0.22	-0.7
4,679,226	-		TX73_021450	0.22	-0.6
4,679,226	-		TX73_021450	0.22	+0.0
4,679,228	-		TX73_021450	0.22	+0.1
4,679,268	-		TX73_021450	0.31	-0.5
4,679,278	-		TX73_021450	0.34	+0.1
4,679,302	-		TX73_021450	0.39	-1.0
4,679,305	+		TX73_021450	0.40	-0.6
4,679,306	+		TX73_021450	0.40	-0.3
4,679,315	-		TX73_021450	0.42	-0.0
4,679,319	-		TX73_021450	0.43	+0.3
4,679,347	-		TX73_021450	0.50	-0.8
4,679,365	-		TX73_021450	0.54	-1.7
4,679,370	+		TX73_021450	0.55	-0.2
4,679,394	-		TX73_021450	0.61	-0.7
4,679,400	+		TX73_021450	0.62	+0.0
4,679,402	+		TX73_021450	0.62	-0.5
4,679,402	+		TX73_021450	0.62	+1.9
4,679,402	+		TX73_021450	0.62	+0.4
4,679,402	+		TX73_021450	0.62	-0.3
4,679,402	+		TX73_021450	0.62	-0.3
4,679,402	+		TX73_021450	0.62	-0.4
4,679,410	-		TX73_021450	0.64	-1.9
4,679,419	-		TX73_021450	0.66	-0.3
4,679,424	-		TX73_021450	0.68	-0.5
4,679,426	+		TX73_021450	0.68	-0.6
4,679,432	-		TX73_021450	0.69	-1.0
4,679,434	-		TX73_021450	0.70	-0.7
4,679,445	+		TX73_021450	0.72	-0.3
4,679,445	-		TX73_021450	0.72	-0.5
4,679,476	+		TX73_021450	0.80	-1.1
4,679,483	+		TX73_021450	0.81	-0.7
4,679,504	+		TX73_021450	0.86	+0.3
4,679,507	-		TX73_021450	0.87	-1.3
4,679,507	-		TX73_021450	0.87	+0.3
4,679,526	-				-0.1
4,679,589	+				-0.5
4,679,600	-				-0.2
4,679,605	+				-0.6
4,679,628	+				+0.2
4,679,630	-				-0.6
4,679,633	+				+1.8
4,679,636	-				-0.6
4,679,656	-				+0.3
4,679,744	-				-0.2
4,679,749	+				-0.7
4,679,749	+				+0.7
4,679,749	-				+0.9
4,679,751	+				-0.2
4,679,752	+				-0.4
4,679,774	+				-0.9
4,679,779	+				-0.4
4,679,782	-				-0.7
4,679,782	-				-0.2
4,679,784	+				+0.3
4,679,785	+				+0.2
4,679,788	+				-0.3
4,679,791	-				-0.0
4,679,793	-				-0.8
4,679,803	+				-0.3
4,679,806	-				-0.2
4,679,808	+				+0.1
4,679,811	-				-0.3
4,679,811	-				-0.8
4,679,811	-				-1.4
4,679,813	+				+0.1
4,679,826	-		TX73_021455	0.10	-1.0
4,679,855	-		TX73_021455	0.18	-0.1
4,679,871	-		TX73_021455	0.22	-0.1
4,679,890	+		TX73_021455	0.27	-0.2
4,679,890	+		TX73_021455	0.27	+0.4
4,679,890	+		TX73_021455	0.27	+0.1
4,679,890	-		TX73_021455	0.27	+1.7
4,679,894	+		TX73_021455	0.28	+0.3
4,679,898	-		TX73_021455	0.29	+0.2
4,679,900	-		TX73_021455	0.29	-0.4
4,679,917	+		TX73_021455	0.34	+0.1
4,679,918	-		TX73_021455	0.34	+1.6
4,679,923	-		TX73_021455	0.35	+0.6
4,679,931	-		TX73_021455	0.38	-0.6
4,679,931	-		TX73_021455	0.38	-0.2
4,679,941	+		TX73_021455	0.40	-0.5
4,679,980	-		TX73_021455	0.50	-0.0
4,680,002	+		TX73_021455	0.56	-0.1
4,680,002	+		TX73_021455	0.56	-0.0
4,680,002	+		TX73_021455	0.56	-0.7
4,680,007	+		TX73_021455	0.57	-1.1
4,680,010	-		TX73_021455	0.58	-0.0
4,680,010	-		TX73_021455	0.58	+0.2
4,680,015	-		TX73_021455	0.59	+0.5
4,680,015	-		TX73_021455	0.59	+0.7
4,680,015	-		TX73_021455	0.59	+0.1
4,680,017	+		TX73_021455	0.60	+0.2
4,680,020	-		TX73_021455	0.61	+0.5
4,680,033	+		TX73_021455	0.64	-0.2
4,680,044	-		TX73_021455	0.67	-0.5
4,680,049	+		TX73_021455	0.68	-0.6
4,680,059	-		TX73_021455	0.71	-0.4
4,680,061	+		TX73_021455	0.71	+0.0
4,680,061	+		TX73_021455	0.71	+0.4
4,680,061	+		TX73_021455	0.71	-0.1
4,680,061	+		TX73_021455	0.71	-0.8
4,680,066	+		TX73_021455	0.73	-0.6
4,680,066	+		TX73_021455	0.73	-0.6
4,680,069	-		TX73_021455	0.73	-0.8
4,680,069	-		TX73_021455	0.73	-0.3
4,680,069	-		TX73_021455	0.73	-0.5
4,680,069	-		TX73_021455	0.73	+0.4
4,680,071	+		TX73_021455	0.74	-0.4
4,680,079	-		TX73_021455	0.76	-0.7
4,680,086	-		TX73_021455	0.78	+0.7
4,680,088	+		TX73_021455	0.78	+0.2
4,680,088	+		TX73_021455	0.78	-0.1
4,680,098	+		TX73_021455	0.81	-0.2
4,680,106	-		TX73_021455	0.83	-0.4
4,680,109	+		TX73_021455	0.84	-0.3
4,680,136	-				+0.2
4,680,166	-				+0.5
4,680,168	-				-0.0
4,680,168	-				+0.5
4,680,179	+				+0.5
4,680,179	-				-0.4
4,680,187	-				+0.1
4,680,205	+				+0.4
4,680,212	+				-0.7
4,680,212	+				+0.1
4,680,213	+				+0.0
4,680,213	-				+0.7
4,680,229	-				-0.0
4,680,264	-				+0.6
4,680,265	-				+0.6
4,680,278	-				+0.0
4,680,310	+				+0.6
4,680,318	+				+0.3
4,680,326	+				-0.7
4,680,326	+				+0.6
4,680,326	+				+0.6
4,680,326	+				+0.4
4,680,328	+				-0.5
4,680,328	+				+0.4
4,680,328	+				-0.0
4,680,328	+				+1.1
4,680,328	+				+0.8
4,680,328	+				+0.2
4,680,328	+				+0.5
4,680,334	-				-0.0
4,680,336	-				+0.8
4,680,336	-				-0.5
4,680,336	-				+0.3
4,680,336	-				+0.7
4,680,351	-				+0.2
4,680,368	+				+0.7
4,680,380	+				+0.5
4,680,393	-				+0.3
4,680,484	+				+0.7
4,680,555	+				-0.9
4,680,555	+				+0.5
4,680,555	+				+0.4
4,680,563	-				-0.5