Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002435

Experiment: PM_N2O butyrate and nitrate 0.1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntTX73_002425 and TX73_002430 overlap by 4 nucleotidesTX73_002430 and TX73_002435 are separated by 8 nucleotidesTX73_002435 and TX73_002440 are separated by 129 nucleotides TX73_002425: TX73_002425 - ABC transporter permease, at 516,373 to 517,197 _002425 TX73_002430: TX73_002430 - ABC transporter ATP-binding protein, at 517,194 to 518,024 _002430 TX73_002435: TX73_002435 - ABC transporter substrate-binding protein, at 518,033 to 519,175 _002435 TX73_002440: TX73_002440 - creatininase family protein, at 519,305 to 520,117 _002440 Position (kb) 518 519 520Strain fitness (log2 ratio) -1 0 1 2at 517.073 kb on + strand, within TX73_002425at 517.086 kb on + strand, within TX73_002425at 517.086 kb on + strand, within TX73_002425at 517.133 kb on + strandat 517.141 kb on - strandat 517.156 kb on + strandat 517.183 kb on + strandat 517.185 kb on + strandat 517.190 kb on - strandat 517.210 kb on + strandat 517.218 kb on - strandat 517.238 kb on + strandat 517.282 kb on + strand, within TX73_002430at 517.319 kb on + strand, within TX73_002430at 517.384 kb on + strand, within TX73_002430at 517.403 kb on + strand, within TX73_002430at 517.403 kb on + strand, within TX73_002430at 517.429 kb on - strand, within TX73_002430at 517.548 kb on + strand, within TX73_002430at 517.556 kb on - strand, within TX73_002430at 517.573 kb on + strand, within TX73_002430at 517.573 kb on + strand, within TX73_002430at 517.616 kb on + strand, within TX73_002430at 517.621 kb on + strand, within TX73_002430at 517.634 kb on - strand, within TX73_002430at 517.634 kb on - strand, within TX73_002430at 517.680 kb on - strand, within TX73_002430at 517.825 kb on - strand, within TX73_002430at 517.839 kb on - strand, within TX73_002430at 517.839 kb on - strand, within TX73_002430at 517.893 kb on - strand, within TX73_002430at 517.972 kb on - strandat 518.014 kb on + strandat 518.047 kb on + strandat 518.061 kb on - strandat 518.061 kb on - strandat 518.081 kb on + strandat 518.087 kb on + strandat 518.150 kb on + strand, within TX73_002435at 518.245 kb on + strand, within TX73_002435at 518.292 kb on - strand, within TX73_002435at 518.371 kb on + strand, within TX73_002435at 518.403 kb on + strand, within TX73_002435at 518.405 kb on + strand, within TX73_002435at 518.408 kb on + strand, within TX73_002435at 518.460 kb on + strand, within TX73_002435at 518.494 kb on + strand, within TX73_002435at 518.494 kb on + strand, within TX73_002435at 518.502 kb on - strand, within TX73_002435at 518.510 kb on + strand, within TX73_002435at 518.518 kb on - strand, within TX73_002435at 518.545 kb on + strand, within TX73_002435at 518.551 kb on + strand, within TX73_002435at 518.559 kb on + strand, within TX73_002435at 518.559 kb on + strand, within TX73_002435at 518.559 kb on - strand, within TX73_002435at 518.559 kb on - strand, within TX73_002435at 518.559 kb on - strand, within TX73_002435at 518.567 kb on - strand, within TX73_002435at 518.640 kb on - strand, within TX73_002435at 518.664 kb on - strand, within TX73_002435at 518.689 kb on - strand, within TX73_002435at 518.707 kb on + strand, within TX73_002435at 518.756 kb on + strand, within TX73_002435at 518.756 kb on - strand, within TX73_002435at 518.819 kb on + strand, within TX73_002435at 518.842 kb on + strand, within TX73_002435at 518.842 kb on + strand, within TX73_002435at 518.850 kb on - strand, within TX73_002435at 518.852 kb on + strand, within TX73_002435at 518.860 kb on - strand, within TX73_002435at 518.861 kb on + strand, within TX73_002435at 518.865 kb on - strand, within TX73_002435at 518.891 kb on - strand, within TX73_002435at 518.905 kb on - strand, within TX73_002435at 518.938 kb on - strand, within TX73_002435at 518.939 kb on - strand, within TX73_002435at 518.954 kb on + strand, within TX73_002435at 518.994 kb on - strand, within TX73_002435at 519.032 kb on + strand, within TX73_002435at 519.032 kb on + strand, within TX73_002435at 519.032 kb on + strand, within TX73_002435at 519.032 kb on + strand, within TX73_002435at 519.040 kb on - strand, within TX73_002435at 519.088 kb on + strandat 519.096 kb on - strandat 519.103 kb on - strandat 519.103 kb on - strandat 519.108 kb on - strandat 519.155 kb on + strandat 519.175 kb on + strandat 519.175 kb on + strandat 519.175 kb on + strandat 519.183 kb on - strandat 519.183 kb on - strandat 519.214 kb on + strandat 519.222 kb on - strandat 519.222 kb on - strandat 519.222 kb on - strandat 519.287 kb on - strandat 519.315 kb on - strandat 520.077 kb on + strandat 520.108 kb on - strandat 520.108 kb on - strandat 520.124 kb on + strandat 520.158 kb on - strandat 520.158 kb on - strandat 520.160 kb on + strandat 520.168 kb on - strandat 520.171 kb on + strandat 520.171 kb on + strandat 520.171 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PM_N2O butyrate and nitrate 0.1 mM
remove
517,073 + TX73_002425 0.85 +0.7
517,086 + TX73_002425 0.86 +0.3
517,086 + TX73_002425 0.86 +1.1
517,133 + -0.3
517,141 - +0.1
517,156 + +1.1
517,183 + -0.2
517,185 + -0.2
517,190 - +0.0
517,210 + -0.1
517,218 - +0.1
517,238 + -0.0
517,282 + TX73_002430 0.11 -0.2
517,319 + TX73_002430 0.15 +0.4
517,384 + TX73_002430 0.23 +0.6
517,403 + TX73_002430 0.25 +0.1
517,403 + TX73_002430 0.25 +0.2
517,429 - TX73_002430 0.28 +0.8
517,548 + TX73_002430 0.43 +0.7
517,556 - TX73_002430 0.44 +0.1
517,573 + TX73_002430 0.46 -0.3
517,573 + TX73_002430 0.46 +0.4
517,616 + TX73_002430 0.51 +0.5
517,621 + TX73_002430 0.51 +1.2
517,634 - TX73_002430 0.53 +0.1
517,634 - TX73_002430 0.53 +0.5
517,680 - TX73_002430 0.58 +1.3
517,825 - TX73_002430 0.76 -0.7
517,839 - TX73_002430 0.78 +0.0
517,839 - TX73_002430 0.78 +1.1
517,893 - TX73_002430 0.84 +0.5
517,972 - -0.2
518,014 + +0.2
518,047 + +0.6
518,061 - +0.2
518,061 - -0.1
518,081 + +0.4
518,087 + +0.7
518,150 + TX73_002435 0.10 +0.4
518,245 + TX73_002435 0.19 +0.3
518,292 - TX73_002435 0.23 +0.6
518,371 + TX73_002435 0.30 +0.3
518,403 + TX73_002435 0.32 +0.4
518,405 + TX73_002435 0.33 +0.7
518,408 + TX73_002435 0.33 +0.6
518,460 + TX73_002435 0.37 +0.6
518,494 + TX73_002435 0.40 +0.3
518,494 + TX73_002435 0.40 +0.4
518,502 - TX73_002435 0.41 +0.6
518,510 + TX73_002435 0.42 +0.1
518,518 - TX73_002435 0.42 +0.7
518,545 + TX73_002435 0.45 +0.4
518,551 + TX73_002435 0.45 +0.8
518,559 + TX73_002435 0.46 +0.3
518,559 + TX73_002435 0.46 +0.7
518,559 - TX73_002435 0.46 +0.6
518,559 - TX73_002435 0.46 +0.3
518,559 - TX73_002435 0.46 +1.4
518,567 - TX73_002435 0.47 -0.2
518,640 - TX73_002435 0.53 +0.5
518,664 - TX73_002435 0.55 +0.4
518,689 - TX73_002435 0.57 +0.2
518,707 + TX73_002435 0.59 -0.1
518,756 + TX73_002435 0.63 +1.1
518,756 - TX73_002435 0.63 +0.7
518,819 + TX73_002435 0.69 +1.0
518,842 + TX73_002435 0.71 +1.3
518,842 + TX73_002435 0.71 -0.2
518,850 - TX73_002435 0.71 +0.5
518,852 + TX73_002435 0.72 +0.1
518,860 - TX73_002435 0.72 +0.6
518,861 + TX73_002435 0.72 +0.4
518,865 - TX73_002435 0.73 -0.2
518,891 - TX73_002435 0.75 +0.3
518,905 - TX73_002435 0.76 +0.2
518,938 - TX73_002435 0.79 +0.4
518,939 - TX73_002435 0.79 +0.3
518,954 + TX73_002435 0.81 +0.3
518,994 - TX73_002435 0.84 +0.3
519,032 + TX73_002435 0.87 +0.1
519,032 + TX73_002435 0.87 +0.3
519,032 + TX73_002435 0.87 +0.1
519,032 + TX73_002435 0.87 +0.6
519,040 - TX73_002435 0.88 +0.7
519,088 + +0.4
519,096 - +0.4
519,103 - +2.4
519,103 - +0.3
519,108 - -0.3
519,155 + -0.1
519,175 + -0.0
519,175 + +0.1
519,175 + +0.4
519,183 - +0.9
519,183 - +0.4
519,214 + -0.0
519,222 - -1.3
519,222 - -0.0
519,222 - +0.4
519,287 - -1.0
519,315 - -0.1
520,077 + +0.6
520,108 - -0.2
520,108 - +0.3
520,124 + +0.3
520,158 - +0.0
520,158 - -0.6
520,160 + -0.4
520,168 - +0.4
520,171 + -0.1
520,171 + +0.4
520,171 + +1.2

Or see this region's nucleotide sequence