Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_005320

Experiment: PM_argon75_N2O25 butyrate and nitrate 0.1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM_argon75_N2O25 butyrate and nitrate 0.1 mM
1,135,545	+				+0.7
1,135,545	+				+0.8
1,135,545	+				-0.2
1,135,545	+				-0.0
1,135,553	-				+0.1
1,135,553	-				+0.4
1,135,553	-				+0.6
1,135,560	+				+0.0
1,135,560	+				-0.0
1,135,568	-				+0.4
1,135,568	-				-1.5
1,135,575	+		TX73_005315	0.10	-0.1
1,135,583	-		TX73_005315	0.11	-0.6
1,135,583	-		TX73_005315	0.11	-0.6
1,135,583	-		TX73_005315	0.11	+0.1
1,135,602	-		TX73_005315	0.13	-0.6
1,135,644	+		TX73_005315	0.18	+0.3
1,135,644	+		TX73_005315	0.18	-0.3
1,135,644	+		TX73_005315	0.18	-0.5
1,135,644	+		TX73_005315	0.18	-0.1
1,135,644	+		TX73_005315	0.18	+0.1
1,135,650	-		TX73_005315	0.19	+0.5
1,135,652	-		TX73_005315	0.19	-0.4
1,135,655	+		TX73_005315	0.19	+0.3
1,135,658	-		TX73_005315	0.19	-0.4
1,135,663	-		TX73_005315	0.20	-1.4
1,135,685	-		TX73_005315	0.22	-0.1
1,135,693	+		TX73_005315	0.23	+0.3
1,135,693	+		TX73_005315	0.23	+0.5
1,135,693	+		TX73_005315	0.23	-0.5
1,135,701	-		TX73_005315	0.24	-0.0
1,135,701	-		TX73_005315	0.24	+0.2
1,135,703	-		TX73_005315	0.24	+0.2
1,135,728	+		TX73_005315	0.27	+0.1
1,135,786	-		TX73_005315	0.33	-0.2
1,135,801	-		TX73_005315	0.35	-0.7
1,135,822	-		TX73_005315	0.37	+0.2
1,135,836	+		TX73_005315	0.39	-1.1
1,135,861	-		TX73_005315	0.42	+0.4
1,135,871	-		TX73_005315	0.43	+0.0
1,135,872	+		TX73_005315	0.43	+0.1
1,135,903	+		TX73_005315	0.46	+0.4
1,135,912	+		TX73_005315	0.47	-0.4
1,135,917	+		TX73_005315	0.48	-0.1
1,135,925	-		TX73_005315	0.49	+0.7
1,135,925	-		TX73_005315	0.49	+0.9
1,135,935	+		TX73_005315	0.50	-0.6
1,135,944	+		TX73_005315	0.51	-0.4
1,135,944	+		TX73_005315	0.51	-0.1
1,135,953	-		TX73_005315	0.52	-0.2
1,135,954	+		TX73_005315	0.52	-1.2
1,135,965	+		TX73_005315	0.53	-0.2
1,136,002	+		TX73_005315	0.57	-0.0
1,136,007	+		TX73_005315	0.58	-0.5
1,136,007	+		TX73_005315	0.58	-0.7
1,136,007	+		TX73_005315	0.58	-0.2
1,136,015	-		TX73_005315	0.58	-0.3
1,136,015	-		TX73_005315	0.58	-0.4
1,136,017	+		TX73_005315	0.59	-0.3
1,136,017	+		TX73_005315	0.59	-1.0
1,136,017	+		TX73_005315	0.59	-0.0
1,136,025	-		TX73_005315	0.60	+0.2
1,136,025	-		TX73_005315	0.60	+0.7
1,136,025	-		TX73_005315	0.60	-0.1
1,136,025	-		TX73_005315	0.60	-0.3
1,136,026	+		TX73_005315	0.60	-0.5
1,136,040	-		TX73_005315	0.61	+0.2
1,136,090	-		TX73_005315	0.67	+0.5
1,136,155	+		TX73_005315	0.74	-0.1
1,136,155	-		TX73_005315	0.74	-0.6
1,136,196	-		TX73_005315	0.78	+0.0
1,136,208	-		TX73_005315	0.80	+0.3
1,136,217	+		TX73_005315	0.81	+0.0
1,136,223	+		TX73_005315	0.81	-0.4
1,136,224	+		TX73_005315	0.81	-0.1
1,136,225	-		TX73_005315	0.81	+0.1
1,136,231	-		TX73_005315	0.82	+0.2
1,136,262	+		TX73_005315	0.85	+0.3
1,136,267	+		TX73_005315	0.86	-0.5
1,136,267	+		TX73_005315	0.86	-0.3
1,136,267	+		TX73_005315	0.86	-0.4
1,136,267	+		TX73_005315	0.86	-0.2
1,136,267	+		TX73_005315	0.86	-0.0
1,136,267	+		TX73_005315	0.86	-0.3
1,136,267	+		TX73_005315	0.86	-1.0
1,136,267	+		TX73_005315	0.86	-0.2
1,136,267	+		TX73_005315	0.86	+0.0
1,136,275	+		TX73_005315	0.87	-1.7
1,136,275	-		TX73_005315	0.87	+0.1
1,136,275	-		TX73_005315	0.87	+0.6
1,136,275	-		TX73_005315	0.87	+0.6
1,136,275	-		TX73_005315	0.87	-0.1
1,136,275	-		TX73_005315	0.87	-0.4
1,136,275	-		TX73_005315	0.87	-0.1
1,136,275	-		TX73_005315	0.87	+0.5
1,136,278	-		TX73_005315	0.87	-0.4
1,136,283	-		TX73_005315	0.88	+0.2
1,136,291	+		TX73_005315	0.89	+0.2
1,136,301	+		TX73_005315	0.90	-0.2
1,136,311	+				+0.2
1,136,319	-				+0.3
1,136,322	+				+0.0
1,136,358	+				+0.7
1,136,358	+				-0.5
1,136,358	+				+0.1
1,136,366	-				-0.5
1,136,366	-				-0.1
1,136,377	+				+0.2
1,136,384	-				-0.0
1,136,385	-				+0.1
1,136,385	-				-0.1
1,136,463	+				+0.1
1,136,517	-				-0.1
1,136,524	+				-1.5
1,136,524	+				-0.9
1,136,532	-				-0.0
1,136,532	-				+0.8
1,136,532	-				+0.3
1,136,537	+				+0.4
1,136,539	-				-0.3
1,136,547	+				-0.3
1,136,549	+				-0.4
1,136,557	-				+0.3
1,136,557	-				+0.0
1,136,557	-				+1.3
1,136,573	+				+0.1
1,136,573	+				+0.5
1,136,573	+				+0.1
1,136,573	+				-1.1
1,136,573	+				-0.9
1,136,573	+				+0.2
1,136,576	-				+0.6
1,136,581	-				+0.9
1,136,581	-				+0.4
1,136,581	-				+0.6
1,136,581	-				-0.9
1,136,581	-				+0.0
1,136,581	-				-0.4
1,136,586	-				-0.2
1,136,597	+				-0.6
1,136,612	+				-0.3
1,136,615	-				+0.4
1,136,633	-		TX73_005320	0.11	-0.7
1,136,644	+		TX73_005320	0.12	-0.4
1,136,652	-		TX73_005320	0.12	+1.9
1,136,723	-		TX73_005320	0.17	-0.6
1,136,737	+		TX73_005320	0.18	+2.3
1,136,762	+		TX73_005320	0.20	+0.6
1,136,762	+		TX73_005320	0.20	-1.7
1,136,770	-		TX73_005320	0.20	+0.6
1,136,783	+		TX73_005320	0.21	+1.3
1,136,785	-		TX73_005320	0.21	+0.6
1,136,822	-		TX73_005320	0.24	+0.7
1,136,850	+		TX73_005320	0.25	+0.3
1,136,901	-		TX73_005320	0.29	+1.2
1,136,911	+		TX73_005320	0.29	-0.7
1,136,911	+		TX73_005320	0.29	-0.0
1,136,922	-		TX73_005320	0.30	+0.3
1,136,933	-		TX73_005320	0.31	-0.2
1,136,978	-		TX73_005320	0.34	+0.4
1,136,979	+		TX73_005320	0.34	+0.5
1,136,979	-		TX73_005320	0.34	-0.0
1,136,986	+		TX73_005320	0.34	-0.5
1,136,986	+		TX73_005320	0.34	-0.6
1,136,989	-		TX73_005320	0.35	+0.1
1,137,032	-		TX73_005320	0.38	+0.8
1,137,062	+		TX73_005320	0.39	+1.0
1,137,065	-		TX73_005320	0.40	+0.7
1,137,065	-		TX73_005320	0.40	-0.0
1,137,079	-		TX73_005320	0.41	+0.1
1,137,082	+		TX73_005320	0.41	+0.9
1,137,092	+		TX73_005320	0.41	-0.1
1,137,097	-		TX73_005320	0.42	-0.0
1,137,113	+		TX73_005320	0.43	+1.0
1,137,113	+		TX73_005320	0.43	+0.6
1,137,113	+		TX73_005320	0.43	-0.2
1,137,113	+		TX73_005320	0.43	+0.9
1,137,113	+		TX73_005320	0.43	+0.7
1,137,113	+		TX73_005320	0.43	+0.6
1,137,121	-		TX73_005320	0.43	+0.8
1,137,121	-		TX73_005320	0.43	-0.2
1,137,121	-		TX73_005320	0.43	-0.3
1,137,121	-		TX73_005320	0.43	+1.1
1,137,121	-		TX73_005320	0.43	-1.2
1,137,121	-		TX73_005320	0.43	+0.9
1,137,121	-		TX73_005320	0.43	+0.0
1,137,121	-		TX73_005320	0.43	-1.3
1,137,129	-		TX73_005320	0.44	+0.3
1,137,134	-		TX73_005320	0.44	-0.4
1,137,139	-		TX73_005320	0.45	-0.2
1,137,155	+		TX73_005320	0.46	+0.0
1,137,205	-		TX73_005320	0.49	-0.0
1,137,205	-		TX73_005320	0.49	+0.1
1,137,205	-		TX73_005320	0.49	+1.5
1,137,210	-		TX73_005320	0.49	-0.0
1,137,210	-		TX73_005320	0.49	+0.5
1,137,259	-		TX73_005320	0.53	-1.4
1,137,268	-		TX73_005320	0.53	+0.9
1,137,268	-		TX73_005320	0.53	-0.3
1,137,280	+		TX73_005320	0.54	+0.7
1,137,280	+		TX73_005320	0.54	+1.7
1,137,315	+		TX73_005320	0.56	+0.7
1,137,345	+		TX73_005320	0.58	+0.8
1,137,396	+		TX73_005320	0.62	-0.2
1,137,404	-		TX73_005320	0.62	+0.5
1,137,414	+		TX73_005320	0.63	+0.6
1,137,432	-		TX73_005320	0.64	+0.3
1,137,432	-		TX73_005320	0.64	-0.4
1,137,435	+		TX73_005320	0.64	+0.2
1,137,470	+		TX73_005320	0.67	+0.3
1,137,475	+		TX73_005320	0.67	+0.1
1,137,480	+		TX73_005320	0.67	+0.1
1,137,523	-		TX73_005320	0.70	+0.8
1,137,523	-		TX73_005320	0.70	+0.1
1,137,528	-		TX73_005320	0.70	-0.2
1,137,570	+		TX73_005320	0.73	-0.0
1,137,575	+		TX73_005320	0.73	+0.2
1,137,578	-		TX73_005320	0.74	-0.6
1,137,583	-		TX73_005320	0.74	-0.0
1,137,583	-		TX73_005320	0.74	-0.7
1,137,583	-		TX73_005320	0.74	+0.7
1,137,632	+		TX73_005320	0.77	+0.9
1,137,632	+		TX73_005320	0.77	+0.9
1,137,772	+		TX73_005320	0.87	-0.8
1,137,805	-		TX73_005320	0.89	+0.6
1,137,810	+		TX73_005320	0.89	-0.1
1,137,818	-		TX73_005320	0.90	+0.6
1,137,883	-				+0.1
1,137,912	+				-0.0
1,137,988	+				+0.4
1,138,867	-				+0.4
1,138,876	+				+0.3
1,138,895	+				+0.2
1,138,964	+				-0.5