Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_024925

Experiment: PM_argon75_N2O25 butyrate and Chloride 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_024915 and TX73_024920 overlap by 4 nucleotidesTX73_024920 and TX73_024925 are separated by 41 nucleotidesTX73_024925 and TX73_024930 are separated by 46 nucleotides TX73_024915: TX73_024915 - cytochrome d ubiquinol oxidase subunit II, at 5,412,608 to 5,413,612 _024915 TX73_024920: TX73_024920 - DUF2474 domain-containing protein, at 5,413,609 to 5,413,740 _024920 TX73_024925: TX73_024925 - L,D-transpeptidase, at 5,413,782 to 5,414,375 _024925 TX73_024930: TX73_024930 - amino acid ABC transporter substrate-binding protein, at 5,414,422 to 5,415,456 _024930 Position (kb) 5413 5414 5415Strain fitness (log2 ratio) -2 -1 0 1at 5412.794 kb on - strand, within TX73_024915at 5412.799 kb on - strand, within TX73_024915at 5412.809 kb on - strand, within TX73_024915at 5412.829 kb on + strand, within TX73_024915at 5412.834 kb on + strand, within TX73_024915at 5412.837 kb on - strand, within TX73_024915at 5412.837 kb on - strand, within TX73_024915at 5412.837 kb on - strand, within TX73_024915at 5412.856 kb on + strand, within TX73_024915at 5412.883 kb on - strand, within TX73_024915at 5412.885 kb on + strand, within TX73_024915at 5412.952 kb on - strand, within TX73_024915at 5412.959 kb on - strand, within TX73_024915at 5412.969 kb on + strand, within TX73_024915at 5413.015 kb on + strand, within TX73_024915at 5413.016 kb on - strand, within TX73_024915at 5413.023 kb on - strand, within TX73_024915at 5413.023 kb on - strand, within TX73_024915at 5413.023 kb on - strand, within TX73_024915at 5413.038 kb on - strand, within TX73_024915at 5413.076 kb on + strand, within TX73_024915at 5413.076 kb on - strand, within TX73_024915at 5413.082 kb on + strand, within TX73_024915at 5413.113 kb on + strand, within TX73_024915at 5413.119 kb on - strand, within TX73_024915at 5413.123 kb on + strand, within TX73_024915at 5413.309 kb on + strand, within TX73_024915at 5413.310 kb on - strand, within TX73_024915at 5413.325 kb on + strand, within TX73_024915at 5413.396 kb on + strand, within TX73_024915at 5413.404 kb on - strand, within TX73_024915at 5413.411 kb on + strand, within TX73_024915at 5413.411 kb on + strand, within TX73_024915at 5413.411 kb on + strand, within TX73_024915at 5413.411 kb on + strand, within TX73_024915at 5413.411 kb on + strand, within TX73_024915at 5413.411 kb on + strand, within TX73_024915at 5413.413 kb on + strand, within TX73_024915at 5413.419 kb on - strand, within TX73_024915at 5413.419 kb on - strand, within TX73_024915at 5413.419 kb on - strand, within TX73_024915at 5413.419 kb on - strand, within TX73_024915at 5413.419 kb on - strand, within TX73_024915at 5413.419 kb on - strand, within TX73_024915at 5413.419 kb on - strand, within TX73_024915at 5413.419 kb on - strand, within TX73_024915at 5413.419 kb on - strand, within TX73_024915at 5413.459 kb on + strand, within TX73_024915at 5413.484 kb on + strand, within TX73_024915at 5413.535 kb on - strandat 5413.546 kb on + strandat 5413.546 kb on + strandat 5413.546 kb on + strandat 5413.546 kb on + strandat 5413.546 kb on + strandat 5413.554 kb on - strandat 5413.554 kb on - strandat 5413.554 kb on - strandat 5413.554 kb on - strandat 5413.554 kb on - strandat 5413.571 kb on - strandat 5413.589 kb on + strandat 5413.615 kb on - strandat 5413.644 kb on - strand, within TX73_024920at 5413.651 kb on + strand, within TX73_024920at 5413.729 kb on + strandat 5413.734 kb on + strandat 5413.734 kb on + strandat 5413.742 kb on - strandat 5413.742 kb on - strandat 5413.804 kb on + strandat 5413.824 kb on + strandat 5413.837 kb on - strandat 5413.837 kb on - strandat 5413.858 kb on - strand, within TX73_024925at 5413.890 kb on - strand, within TX73_024925at 5413.962 kb on - strand, within TX73_024925at 5413.979 kb on + strand, within TX73_024925at 5413.988 kb on - strand, within TX73_024925at 5413.999 kb on + strand, within TX73_024925at 5413.999 kb on + strand, within TX73_024925at 5413.999 kb on + strand, within TX73_024925at 5414.011 kb on - strand, within TX73_024925at 5414.029 kb on - strand, within TX73_024925at 5414.033 kb on + strand, within TX73_024925at 5414.054 kb on - strand, within TX73_024925at 5414.056 kb on + strand, within TX73_024925at 5414.061 kb on + strand, within TX73_024925at 5414.069 kb on - strand, within TX73_024925at 5414.079 kb on + strand, within TX73_024925at 5414.081 kb on + strand, within TX73_024925at 5414.081 kb on + strand, within TX73_024925at 5414.141 kb on + strand, within TX73_024925at 5414.147 kb on + strand, within TX73_024925at 5414.213 kb on + strand, within TX73_024925at 5414.239 kb on + strand, within TX73_024925at 5414.247 kb on - strand, within TX73_024925at 5414.284 kb on + strand, within TX73_024925at 5414.284 kb on + strand, within TX73_024925at 5414.307 kb on - strand, within TX73_024925at 5414.307 kb on - strand, within TX73_024925at 5414.338 kb on + strandat 5414.346 kb on - strandat 5414.370 kb on - strandat 5414.436 kb on + strandat 5414.437 kb on + strandat 5414.498 kb on + strandat 5414.506 kb on - strandat 5414.506 kb on - strandat 5414.516 kb on - strandat 5414.521 kb on + strandat 5414.548 kb on + strand, within TX73_024930at 5414.548 kb on + strand, within TX73_024930at 5414.551 kb on + strand, within TX73_024930at 5414.554 kb on - strand, within TX73_024930at 5414.556 kb on - strand, within TX73_024930at 5414.556 kb on - strand, within TX73_024930at 5414.556 kb on - strand, within TX73_024930at 5414.577 kb on + strand, within TX73_024930at 5414.606 kb on - strand, within TX73_024930at 5414.674 kb on + strand, within TX73_024930at 5414.684 kb on - strand, within TX73_024930at 5414.709 kb on + strand, within TX73_024930at 5414.711 kb on + strand, within TX73_024930at 5414.770 kb on - strand, within TX73_024930at 5414.826 kb on + strand, within TX73_024930at 5414.829 kb on - strand, within TX73_024930at 5414.834 kb on - strand, within TX73_024930at 5414.887 kb on - strand, within TX73_024930at 5414.906 kb on + strand, within TX73_024930at 5414.909 kb on - strand, within TX73_024930at 5414.916 kb on + strand, within TX73_024930at 5415.015 kb on + strand, within TX73_024930at 5415.057 kb on + strand, within TX73_024930at 5415.075 kb on + strand, within TX73_024930at 5415.135 kb on - strand, within TX73_024930at 5415.189 kb on + strand, within TX73_024930at 5415.306 kb on - strand, within TX73_024930at 5415.361 kb on + strandat 5415.369 kb on - strandat 5415.369 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM_argon75_N2O25 butyrate and Chloride 0.1 mM
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5,412,794 - TX73_024915 0.19 -0.2
5,412,799 - TX73_024915 0.19 -0.1
5,412,809 - TX73_024915 0.20 -0.9
5,412,829 + TX73_024915 0.22 -0.4
5,412,834 + TX73_024915 0.22 +1.2
5,412,837 - TX73_024915 0.23 -0.3
5,412,837 - TX73_024915 0.23 +1.5
5,412,837 - TX73_024915 0.23 +0.4
5,412,856 + TX73_024915 0.25 -0.2
5,412,883 - TX73_024915 0.27 -0.1
5,412,885 + TX73_024915 0.28 +0.3
5,412,952 - TX73_024915 0.34 -0.6
5,412,959 - TX73_024915 0.35 -0.1
5,412,969 + TX73_024915 0.36 +0.4
5,413,015 + TX73_024915 0.40 +0.4
5,413,016 - TX73_024915 0.41 -0.7
5,413,023 - TX73_024915 0.41 +0.0
5,413,023 - TX73_024915 0.41 +0.2
5,413,023 - TX73_024915 0.41 -0.2
5,413,038 - TX73_024915 0.43 +0.1
5,413,076 + TX73_024915 0.47 +0.1
5,413,076 - TX73_024915 0.47 -1.1
5,413,082 + TX73_024915 0.47 -0.5
5,413,113 + TX73_024915 0.50 +0.8
5,413,119 - TX73_024915 0.51 +0.9
5,413,123 + TX73_024915 0.51 +0.1
5,413,309 + TX73_024915 0.70 -1.3
5,413,310 - TX73_024915 0.70 -0.2
5,413,325 + TX73_024915 0.71 +0.7
5,413,396 + TX73_024915 0.78 -0.9
5,413,404 - TX73_024915 0.79 +0.2
5,413,411 + TX73_024915 0.80 -0.5
5,413,411 + TX73_024915 0.80 +0.2
5,413,411 + TX73_024915 0.80 -0.4
5,413,411 + TX73_024915 0.80 +1.1
5,413,411 + TX73_024915 0.80 -1.6
5,413,411 + TX73_024915 0.80 +0.1
5,413,413 + TX73_024915 0.80 +0.3
5,413,419 - TX73_024915 0.81 -0.4
5,413,419 - TX73_024915 0.81 +0.0
5,413,419 - TX73_024915 0.81 -1.4
5,413,419 - TX73_024915 0.81 -0.8
5,413,419 - TX73_024915 0.81 -0.4
5,413,419 - TX73_024915 0.81 -0.9
5,413,419 - TX73_024915 0.81 +0.6
5,413,419 - TX73_024915 0.81 +0.8
5,413,419 - TX73_024915 0.81 +0.3
5,413,459 + TX73_024915 0.85 -1.1
5,413,484 + TX73_024915 0.87 -0.4
5,413,535 - -0.2
5,413,546 + -0.3
5,413,546 + +0.2
5,413,546 + -0.2
5,413,546 + -0.4
5,413,546 + -0.9
5,413,554 - +0.6
5,413,554 - +0.3
5,413,554 - +0.5
5,413,554 - -0.3
5,413,554 - -0.1
5,413,571 - -0.6
5,413,589 + -0.0
5,413,615 - +0.4
5,413,644 - TX73_024920 0.27 -1.6
5,413,651 + TX73_024920 0.32 -0.1
5,413,729 + +0.1
5,413,734 + -1.1
5,413,734 + +0.6
5,413,742 - +1.2
5,413,742 - -0.2
5,413,804 + -0.7
5,413,824 + -0.1
5,413,837 - +0.4
5,413,837 - -0.5
5,413,858 - TX73_024925 0.13 +0.2
5,413,890 - TX73_024925 0.18 +0.1
5,413,962 - TX73_024925 0.30 -0.3
5,413,979 + TX73_024925 0.33 +0.2
5,413,988 - TX73_024925 0.35 +0.1
5,413,999 + TX73_024925 0.37 +0.9
5,413,999 + TX73_024925 0.37 +0.7
5,413,999 + TX73_024925 0.37 -0.3
5,414,011 - TX73_024925 0.39 +0.2
5,414,029 - TX73_024925 0.42 -0.0
5,414,033 + TX73_024925 0.42 +0.4
5,414,054 - TX73_024925 0.46 +0.1
5,414,056 + TX73_024925 0.46 -0.2
5,414,061 + TX73_024925 0.47 -0.7
5,414,069 - TX73_024925 0.48 +0.6
5,414,079 + TX73_024925 0.50 +0.4
5,414,081 + TX73_024925 0.50 -0.5
5,414,081 + TX73_024925 0.50 +0.0
5,414,141 + TX73_024925 0.60 +0.5
5,414,147 + TX73_024925 0.61 +0.1
5,414,213 + TX73_024925 0.73 +0.0
5,414,239 + TX73_024925 0.77 +0.5
5,414,247 - TX73_024925 0.78 +0.4
5,414,284 + TX73_024925 0.85 +0.0
5,414,284 + TX73_024925 0.85 +0.5
5,414,307 - TX73_024925 0.88 +0.6
5,414,307 - TX73_024925 0.88 -1.3
5,414,338 + +0.2
5,414,346 - +0.2
5,414,370 - -1.8
5,414,436 + +0.3
5,414,437 + +0.7
5,414,498 + -0.1
5,414,506 - +0.0
5,414,506 - -0.4
5,414,516 - -1.1
5,414,521 + -0.3
5,414,548 + TX73_024930 0.12 +0.1
5,414,548 + TX73_024930 0.12 -0.6
5,414,551 + TX73_024930 0.12 +0.4
5,414,554 - TX73_024930 0.13 +0.3
5,414,556 - TX73_024930 0.13 +0.7
5,414,556 - TX73_024930 0.13 -0.7
5,414,556 - TX73_024930 0.13 -0.3
5,414,577 + TX73_024930 0.15 +0.3
5,414,606 - TX73_024930 0.18 -0.2
5,414,674 + TX73_024930 0.24 -0.1
5,414,684 - TX73_024930 0.25 +0.3
5,414,709 + TX73_024930 0.28 +0.4
5,414,711 + TX73_024930 0.28 -0.4
5,414,770 - TX73_024930 0.34 -0.3
5,414,826 + TX73_024930 0.39 -1.4
5,414,829 - TX73_024930 0.39 +0.1
5,414,834 - TX73_024930 0.40 -1.0
5,414,887 - TX73_024930 0.45 +0.6
5,414,906 + TX73_024930 0.47 -1.6
5,414,909 - TX73_024930 0.47 -1.2
5,414,916 + TX73_024930 0.48 +0.1
5,415,015 + TX73_024930 0.57 +0.5
5,415,057 + TX73_024930 0.61 -0.0
5,415,075 + TX73_024930 0.63 +0.9
5,415,135 - TX73_024930 0.69 +0.6
5,415,189 + TX73_024930 0.74 -0.6
5,415,306 - TX73_024930 0.85 +0.4
5,415,361 + +0.6
5,415,369 - +0.2
5,415,369 - -0.2

Or see this region's nucleotide sequence