Experiment: PM_argon75_N2O25 butyrate and Chloride 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002090 and TX73_002095 are separated by 18 nucleotides TX73_002095 and TX73_002100 are separated by 82 nucleotides TX73_002100 and TX73_002105 are separated by 199 nucleotides
TX73_002090: TX73_002090 - TetR/AcrR family transcriptional regulator, at 442,870 to 443,490
_002090
TX73_002095: TX73_002095 - YkvA family protein, at 443,509 to 443,883
_002095
TX73_002100: TX73_002100 - 4a-hydroxytetrahydrobiopterin dehydratase, at 443,966 to 444,268
_002100
TX73_002105: TX73_002105 - TAXI family TRAP transporter solute-binding subunit, at 444,468 to 445,856
_002105
Position (kb) 443
444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 442.970 kb on - strand, within TX73_002090 at 442.978 kb on - strand, within TX73_002090 at 442.997 kb on + strand, within TX73_002090 at 442.997 kb on + strand, within TX73_002090 at 442.997 kb on + strand, within TX73_002090 at 442.997 kb on + strand, within TX73_002090 at 442.997 kb on + strand, within TX73_002090 at 443.019 kb on - strand, within TX73_002090 at 443.020 kb on + strand, within TX73_002090 at 443.048 kb on - strand, within TX73_002090 at 443.050 kb on + strand, within TX73_002090 at 443.050 kb on + strand, within TX73_002090 at 443.050 kb on + strand, within TX73_002090 at 443.050 kb on + strand, within TX73_002090 at 443.058 kb on - strand, within TX73_002090 at 443.058 kb on - strand, within TX73_002090 at 443.058 kb on - strand, within TX73_002090 at 443.061 kb on - strand, within TX73_002090 at 443.084 kb on - strand, within TX73_002090 at 443.090 kb on - strand, within TX73_002090 at 443.140 kb on - strand, within TX73_002090 at 443.140 kb on - strand, within TX73_002090 at 443.152 kb on + strand, within TX73_002090 at 443.169 kb on + strand, within TX73_002090 at 443.193 kb on + strand, within TX73_002090 at 443.269 kb on - strand, within TX73_002090 at 443.295 kb on - strand, within TX73_002090 at 443.344 kb on + strand, within TX73_002090 at 443.368 kb on + strand, within TX73_002090 at 443.373 kb on + strand, within TX73_002090 at 443.378 kb on + strand, within TX73_002090 at 443.378 kb on + strand, within TX73_002090 at 443.381 kb on - strand, within TX73_002090 at 443.386 kb on - strand, within TX73_002090 at 443.409 kb on + strand, within TX73_002090 at 443.428 kb on - strand, within TX73_002090 at 443.429 kb on + strand at 443.429 kb on + strand at 443.434 kb on + strand at 443.442 kb on - strand at 443.475 kb on + strand at 443.485 kb on + strand at 443.485 kb on + strand at 443.485 kb on + strand at 443.485 kb on + strand at 443.492 kb on - strand at 443.493 kb on - strand at 443.493 kb on - strand at 443.493 kb on - strand at 443.516 kb on - strand at 443.520 kb on + strand at 443.534 kb on - strand at 443.562 kb on + strand, within TX73_002095 at 443.570 kb on - strand, within TX73_002095 at 443.570 kb on - strand, within TX73_002095 at 443.578 kb on + strand, within TX73_002095 at 443.692 kb on + strand, within TX73_002095 at 443.695 kb on - strand, within TX73_002095 at 443.710 kb on - strand, within TX73_002095 at 443.740 kb on + strand, within TX73_002095 at 443.748 kb on - strand, within TX73_002095 at 443.748 kb on - strand, within TX73_002095 at 443.766 kb on - strand, within TX73_002095 at 443.781 kb on + strand, within TX73_002095 at 443.789 kb on + strand, within TX73_002095 at 443.823 kb on + strand, within TX73_002095 at 443.831 kb on - strand, within TX73_002095 at 443.831 kb on - strand, within TX73_002095 at 443.853 kb on - strand at 443.861 kb on - strand at 443.862 kb on - strand at 443.876 kb on + strand at 443.877 kb on - strand at 443.919 kb on + strand at 443.949 kb on - strand at 444.021 kb on - strand, within TX73_002100 at 444.053 kb on + strand, within TX73_002100 at 444.061 kb on - strand, within TX73_002100 at 444.066 kb on - strand, within TX73_002100 at 444.074 kb on + strand, within TX73_002100 at 444.143 kb on + strand, within TX73_002100 at 444.215 kb on + strand, within TX73_002100 at 444.280 kb on - strand at 444.283 kb on - strand at 444.285 kb on - strand at 444.403 kb on + strand at 444.405 kb on - strand at 444.413 kb on + strand at 444.463 kb on + strand at 444.465 kb on - strand at 444.489 kb on - strand at 444.507 kb on + strand at 444.539 kb on + strand at 444.566 kb on - strand at 444.585 kb on + strand at 444.586 kb on + strand at 444.690 kb on + strand, within TX73_002105 at 444.710 kb on + strand, within TX73_002105 at 444.723 kb on - strand, within TX73_002105 at 444.731 kb on + strand, within TX73_002105 at 444.745 kb on + strand, within TX73_002105 at 444.755 kb on + strand, within TX73_002105 at 444.791 kb on + strand, within TX73_002105 at 444.791 kb on + strand, within TX73_002105 at 444.791 kb on + strand, within TX73_002105 at 444.806 kb on + strand, within TX73_002105 at 444.832 kb on - strand, within TX73_002105 at 444.832 kb on - strand, within TX73_002105 at 444.848 kb on + strand, within TX73_002105 at 444.863 kb on - strand, within TX73_002105 at 444.869 kb on - strand, within TX73_002105 at 444.937 kb on - strand, within TX73_002105 at 444.951 kb on + strand, within TX73_002105 at 444.969 kb on - strand, within TX73_002105 at 444.974 kb on + strand, within TX73_002105 at 445.006 kb on + strand, within TX73_002105 at 445.043 kb on - strand, within TX73_002105 at 445.090 kb on - strand, within TX73_002105 at 445.129 kb on - strand, within TX73_002105 at 445.153 kb on - strand, within TX73_002105 at 445.193 kb on + strand, within TX73_002105 at 445.203 kb on + strand, within TX73_002105 at 445.208 kb on - strand, within TX73_002105
Per-strain Table
Position Strand Gene LocusTag Fraction PM_argon75_N2O25 butyrate and Chloride 0.1 mM remove 442,970 - TX73_002090 0.16 +0.9 442,978 - TX73_002090 0.17 +0.5 442,997 + TX73_002090 0.20 +0.0 442,997 + TX73_002090 0.20 -0.1 442,997 + TX73_002090 0.20 -0.2 442,997 + TX73_002090 0.20 +0.1 442,997 + TX73_002090 0.20 +0.6 443,019 - TX73_002090 0.24 -0.5 443,020 + TX73_002090 0.24 +0.1 443,048 - TX73_002090 0.29 -0.3 443,050 + TX73_002090 0.29 +1.5 443,050 + TX73_002090 0.29 -0.5 443,050 + TX73_002090 0.29 -0.1 443,050 + TX73_002090 0.29 +0.8 443,058 - TX73_002090 0.30 -0.4 443,058 - TX73_002090 0.30 -0.5 443,058 - TX73_002090 0.30 +0.2 443,061 - TX73_002090 0.31 -0.4 443,084 - TX73_002090 0.34 +0.1 443,090 - TX73_002090 0.35 -0.1 443,140 - TX73_002090 0.43 +0.3 443,140 - TX73_002090 0.43 +0.2 443,152 + TX73_002090 0.45 +0.9 443,169 + TX73_002090 0.48 -0.3 443,193 + TX73_002090 0.52 +0.5 443,269 - TX73_002090 0.64 -0.6 443,295 - TX73_002090 0.68 -1.5 443,344 + TX73_002090 0.76 -0.1 443,368 + TX73_002090 0.80 -0.4 443,373 + TX73_002090 0.81 -1.4 443,378 + TX73_002090 0.82 -0.6 443,378 + TX73_002090 0.82 +0.3 443,381 - TX73_002090 0.82 -0.3 443,386 - TX73_002090 0.83 +0.1 443,409 + TX73_002090 0.87 +0.5 443,428 - TX73_002090 0.90 +0.8 443,429 + +0.1 443,429 + +1.7 443,434 + +1.7 443,442 - -0.7 443,475 + +0.3 443,485 + -0.5 443,485 + +1.0 443,485 + +0.6 443,485 + +0.0 443,492 - -0.0 443,493 - +0.3 443,493 - +0.1 443,493 - -0.3 443,516 - +1.8 443,520 + +0.2 443,534 - +0.8 443,562 + TX73_002095 0.14 -0.3 443,570 - TX73_002095 0.16 -1.0 443,570 - TX73_002095 0.16 +0.4 443,578 + TX73_002095 0.18 +0.8 443,692 + TX73_002095 0.49 +0.9 443,695 - TX73_002095 0.50 -0.3 443,710 - TX73_002095 0.54 +0.9 443,740 + TX73_002095 0.62 +1.1 443,748 - TX73_002095 0.64 -0.4 443,748 - TX73_002095 0.64 +0.2 443,766 - TX73_002095 0.69 +0.1 443,781 + TX73_002095 0.73 +0.2 443,789 + TX73_002095 0.75 +0.2 443,823 + TX73_002095 0.84 -0.2 443,831 - TX73_002095 0.86 -1.5 443,831 - TX73_002095 0.86 -0.6 443,853 - +0.3 443,861 - +0.7 443,862 - -0.7 443,876 + -0.4 443,877 - -0.0 443,919 + +0.1 443,949 - +0.2 444,021 - TX73_002100 0.18 -0.1 444,053 + TX73_002100 0.29 +0.5 444,061 - TX73_002100 0.31 -0.5 444,066 - TX73_002100 0.33 +0.1 444,074 + TX73_002100 0.36 -0.6 444,143 + TX73_002100 0.58 -0.7 444,215 + TX73_002100 0.82 -0.5 444,280 - +0.6 444,283 - -0.8 444,285 - +0.9 444,403 + -0.7 444,405 - +0.7 444,413 + +0.2 444,463 + +0.6 444,465 - -0.8 444,489 - -2.9 444,507 + +0.9 444,539 + +0.2 444,566 - +0.5 444,585 + +0.0 444,586 + -0.1 444,690 + TX73_002105 0.16 +1.3 444,710 + TX73_002105 0.17 -0.2 444,723 - TX73_002105 0.18 +0.4 444,731 + TX73_002105 0.19 -0.2 444,745 + TX73_002105 0.20 +0.3 444,755 + TX73_002105 0.21 -1.5 444,791 + TX73_002105 0.23 +0.4 444,791 + TX73_002105 0.23 -0.2 444,791 + TX73_002105 0.23 +0.2 444,806 + TX73_002105 0.24 +0.0 444,832 - TX73_002105 0.26 -0.1 444,832 - TX73_002105 0.26 -0.8 444,848 + TX73_002105 0.27 -0.3 444,863 - TX73_002105 0.28 -0.1 444,869 - TX73_002105 0.29 -0.9 444,937 - TX73_002105 0.34 -0.9 444,951 + TX73_002105 0.35 +0.1 444,969 - TX73_002105 0.36 -1.2 444,974 + TX73_002105 0.36 +0.3 445,006 + TX73_002105 0.39 +0.2 445,043 - TX73_002105 0.41 -0.2 445,090 - TX73_002105 0.45 -0.2 445,129 - TX73_002105 0.48 +0.8 445,153 - TX73_002105 0.49 +0.4 445,193 + TX73_002105 0.52 +0.1 445,203 + TX73_002105 0.53 -1.6 445,208 - TX73_002105 0.53 -0.7
Or see this region's nucleotide sequence