Experiment: PM_argon75_N2O25 butyrate and Chloride 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_024310 and TX73_024315 are separated by 104 nucleotides TX73_024315 and TX73_024320 are separated by 158 nucleotides TX73_024320 and TX73_024325 overlap by 1 nucleotides
TX73_024310: TX73_024310 - caspase family protein, at 5,274,934 to 5,276,364
_024310
TX73_024315: TX73_024315 - OmpA family protein, at 5,276,469 to 5,277,119
_024315
TX73_024320: TX73_024320 - efflux RND transporter periplasmic adaptor subunit, at 5,277,278 to 5,278,165
_024320
TX73_024325: TX73_024325 - efflux RND transporter permease subunit, at 5,278,165 to 5,281,317
_024325
Position (kb) 5277
5278
5279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5276.355 kb on - strand at 5276.362 kb on - strand at 5276.366 kb on + strand at 5276.366 kb on + strand at 5276.367 kb on - strand at 5276.367 kb on - strand at 5276.367 kb on - strand at 5276.433 kb on - strand at 5276.480 kb on - strand at 5276.485 kb on + strand at 5276.487 kb on + strand at 5276.487 kb on + strand at 5276.487 kb on + strand at 5276.495 kb on - strand at 5276.495 kb on - strand at 5276.495 kb on - strand at 5276.495 kb on - strand at 5276.497 kb on + strand at 5276.497 kb on + strand at 5276.567 kb on + strand, within TX73_024315 at 5276.572 kb on + strand, within TX73_024315 at 5276.575 kb on - strand, within TX73_024315 at 5276.584 kb on - strand, within TX73_024315 at 5276.584 kb on - strand, within TX73_024315 at 5276.611 kb on - strand, within TX73_024315 at 5276.669 kb on + strand, within TX73_024315 at 5276.669 kb on + strand, within TX73_024315 at 5276.672 kb on - strand, within TX73_024315 at 5276.697 kb on + strand, within TX73_024315 at 5276.737 kb on - strand, within TX73_024315 at 5276.748 kb on + strand, within TX73_024315 at 5276.828 kb on - strand, within TX73_024315 at 5276.842 kb on + strand, within TX73_024315 at 5276.843 kb on - strand, within TX73_024315 at 5276.847 kb on + strand, within TX73_024315 at 5276.847 kb on + strand, within TX73_024315 at 5276.852 kb on + strand, within TX73_024315 at 5276.855 kb on - strand, within TX73_024315 at 5276.855 kb on - strand, within TX73_024315 at 5276.860 kb on - strand, within TX73_024315 at 5276.860 kb on - strand, within TX73_024315 at 5276.860 kb on - strand, within TX73_024315 at 5276.860 kb on - strand, within TX73_024315 at 5276.860 kb on - strand, within TX73_024315 at 5276.871 kb on + strand, within TX73_024315 at 5276.920 kb on + strand, within TX73_024315 at 5276.957 kb on + strand, within TX73_024315 at 5276.965 kb on - strand, within TX73_024315 at 5276.973 kb on + strand, within TX73_024315 at 5276.981 kb on + strand, within TX73_024315 at 5277.000 kb on + strand, within TX73_024315 at 5277.016 kb on + strand, within TX73_024315 at 5277.021 kb on + strand, within TX73_024315 at 5277.024 kb on - strand, within TX73_024315 at 5277.029 kb on - strand, within TX73_024315 at 5277.056 kb on - strand at 5277.073 kb on + strand at 5277.075 kb on + strand at 5277.081 kb on - strand at 5277.101 kb on + strand at 5277.104 kb on - strand at 5277.104 kb on - strand at 5277.111 kb on + strand at 5277.123 kb on - strand at 5277.147 kb on + strand at 5277.154 kb on - strand at 5277.154 kb on - strand at 5277.169 kb on - strand at 5277.182 kb on + strand at 5277.193 kb on + strand at 5277.199 kb on - strand at 5277.200 kb on + strand at 5277.201 kb on + strand at 5277.201 kb on + strand at 5277.201 kb on + strand at 5277.201 kb on + strand at 5277.203 kb on + strand at 5277.205 kb on + strand at 5277.208 kb on - strand at 5277.208 kb on - strand at 5277.209 kb on - strand at 5277.209 kb on - strand at 5277.209 kb on - strand at 5277.209 kb on - strand at 5277.209 kb on - strand at 5277.210 kb on - strand at 5277.210 kb on - strand at 5277.244 kb on + strand at 5277.244 kb on + strand at 5277.252 kb on - strand at 5277.287 kb on + strand at 5277.305 kb on - strand at 5277.330 kb on + strand at 5277.360 kb on - strand at 5277.360 kb on - strand at 5277.360 kb on - strand at 5277.374 kb on - strand, within TX73_024320 at 5277.379 kb on - strand, within TX73_024320 at 5277.379 kb on - strand, within TX73_024320 at 5277.424 kb on - strand, within TX73_024320 at 5277.431 kb on - strand, within TX73_024320 at 5277.450 kb on - strand, within TX73_024320 at 5277.464 kb on - strand, within TX73_024320 at 5277.496 kb on + strand, within TX73_024320 at 5277.557 kb on + strand, within TX73_024320 at 5277.614 kb on + strand, within TX73_024320 at 5277.622 kb on - strand, within TX73_024320 at 5277.669 kb on + strand, within TX73_024320 at 5277.734 kb on - strand, within TX73_024320 at 5277.743 kb on - strand, within TX73_024320 at 5277.750 kb on - strand, within TX73_024320 at 5277.771 kb on + strand, within TX73_024320 at 5277.783 kb on + strand, within TX73_024320 at 5277.791 kb on - strand, within TX73_024320 at 5277.791 kb on - strand, within TX73_024320 at 5277.793 kb on + strand, within TX73_024320 at 5277.818 kb on + strand, within TX73_024320 at 5277.873 kb on + strand, within TX73_024320 at 5277.879 kb on + strand, within TX73_024320 at 5277.883 kb on + strand, within TX73_024320 at 5277.887 kb on - strand, within TX73_024320 at 5277.928 kb on - strand, within TX73_024320 at 5277.995 kb on + strand, within TX73_024320 at 5278.008 kb on + strand, within TX73_024320 at 5278.062 kb on + strand, within TX73_024320 at 5278.116 kb on + strand at 5278.148 kb on - strand at 5278.169 kb on + strand at 5278.185 kb on - strand at 5278.204 kb on - strand at 5278.240 kb on - strand at 5278.243 kb on + strand at 5278.250 kb on - strand at 5278.255 kb on - strand at 5278.289 kb on - strand at 5278.310 kb on - strand at 5278.445 kb on - strand at 5278.501 kb on - strand, within TX73_024325 at 5278.525 kb on - strand, within TX73_024325 at 5278.528 kb on + strand, within TX73_024325 at 5278.581 kb on - strand, within TX73_024325 at 5278.663 kb on + strand, within TX73_024325 at 5278.679 kb on + strand, within TX73_024325 at 5278.746 kb on + strand, within TX73_024325 at 5278.754 kb on + strand, within TX73_024325 at 5278.754 kb on - strand, within TX73_024325 at 5278.804 kb on - strand, within TX73_024325 at 5278.887 kb on - strand, within TX73_024325 at 5278.897 kb on + strand, within TX73_024325 at 5278.934 kb on - strand, within TX73_024325 at 5278.934 kb on - strand, within TX73_024325 at 5278.972 kb on + strand, within TX73_024325 at 5278.989 kb on + strand, within TX73_024325 at 5278.997 kb on - strand, within TX73_024325 at 5278.997 kb on - strand, within TX73_024325 at 5279.038 kb on - strand, within TX73_024325 at 5279.063 kb on - strand, within TX73_024325 at 5279.063 kb on - strand, within TX73_024325 at 5279.073 kb on - strand, within TX73_024325 at 5279.108 kb on - strand, within TX73_024325 at 5279.119 kb on - strand, within TX73_024325
Per-strain Table
Position Strand Gene LocusTag Fraction PM_argon75_N2O25 butyrate and Chloride 0.1 mM remove 5,276,355 - -1.3 5,276,362 - -0.0 5,276,366 + +2.0 5,276,366 + -0.1 5,276,367 - -1.2 5,276,367 - -0.1 5,276,367 - -1.1 5,276,433 - +0.0 5,276,480 - +0.4 5,276,485 + +1.1 5,276,487 + +2.4 5,276,487 + +0.5 5,276,487 + -0.7 5,276,495 - +0.3 5,276,495 - +0.3 5,276,495 - +0.5 5,276,495 - -0.2 5,276,497 + -1.1 5,276,497 + -0.7 5,276,567 + TX73_024315 0.15 +0.4 5,276,572 + TX73_024315 0.16 +0.6 5,276,575 - TX73_024315 0.16 +0.6 5,276,584 - TX73_024315 0.18 -0.3 5,276,584 - TX73_024315 0.18 +1.3 5,276,611 - TX73_024315 0.22 +1.0 5,276,669 + TX73_024315 0.31 +0.1 5,276,669 + TX73_024315 0.31 -0.2 5,276,672 - TX73_024315 0.31 +0.1 5,276,697 + TX73_024315 0.35 -0.2 5,276,737 - TX73_024315 0.41 -0.1 5,276,748 + TX73_024315 0.43 +0.0 5,276,828 - TX73_024315 0.55 -1.0 5,276,842 + TX73_024315 0.57 +0.5 5,276,843 - TX73_024315 0.57 +1.7 5,276,847 + TX73_024315 0.58 -0.8 5,276,847 + TX73_024315 0.58 -1.3 5,276,852 + TX73_024315 0.59 -0.3 5,276,855 - TX73_024315 0.59 -0.2 5,276,855 - TX73_024315 0.59 -0.6 5,276,860 - TX73_024315 0.60 +0.5 5,276,860 - TX73_024315 0.60 +0.2 5,276,860 - TX73_024315 0.60 +0.2 5,276,860 - TX73_024315 0.60 -0.4 5,276,860 - TX73_024315 0.60 +0.3 5,276,871 + TX73_024315 0.62 +1.0 5,276,920 + TX73_024315 0.69 +0.2 5,276,957 + TX73_024315 0.75 +0.7 5,276,965 - TX73_024315 0.76 +0.1 5,276,973 + TX73_024315 0.77 -0.4 5,276,981 + TX73_024315 0.79 -1.6 5,277,000 + TX73_024315 0.82 +0.8 5,277,016 + TX73_024315 0.84 -0.6 5,277,021 + TX73_024315 0.85 -0.5 5,277,024 - TX73_024315 0.85 -1.2 5,277,029 - TX73_024315 0.86 +0.5 5,277,056 - -0.1 5,277,073 + -0.1 5,277,075 + -0.4 5,277,081 - -0.5 5,277,101 + -1.7 5,277,104 - +1.2 5,277,104 - +2.4 5,277,111 + +2.1 5,277,123 - -1.2 5,277,147 + +0.9 5,277,154 - +0.1 5,277,154 - -0.5 5,277,169 - +0.4 5,277,182 + -0.6 5,277,193 + +0.8 5,277,199 - -0.1 5,277,200 + -0.3 5,277,201 + -0.8 5,277,201 + -0.1 5,277,201 + -0.4 5,277,201 + -0.0 5,277,203 + -1.0 5,277,205 + -0.2 5,277,208 - -0.3 5,277,208 - -2.8 5,277,209 - -1.7 5,277,209 - -2.5 5,277,209 - -0.7 5,277,209 - +0.2 5,277,209 - +0.7 5,277,210 - -0.2 5,277,210 - -0.8 5,277,244 + -0.1 5,277,244 + +0.1 5,277,252 - -0.3 5,277,287 + -0.3 5,277,305 - -0.1 5,277,330 + -0.5 5,277,360 - +0.0 5,277,360 - -2.3 5,277,360 - +2.7 5,277,374 - TX73_024320 0.11 +0.3 5,277,379 - TX73_024320 0.11 +0.3 5,277,379 - TX73_024320 0.11 -0.0 5,277,424 - TX73_024320 0.16 -0.4 5,277,431 - TX73_024320 0.17 +0.8 5,277,450 - TX73_024320 0.19 +0.0 5,277,464 - TX73_024320 0.21 +0.8 5,277,496 + TX73_024320 0.25 +2.3 5,277,557 + TX73_024320 0.31 -0.3 5,277,614 + TX73_024320 0.38 -0.4 5,277,622 - TX73_024320 0.39 +0.7 5,277,669 + TX73_024320 0.44 +0.6 5,277,734 - TX73_024320 0.51 +1.0 5,277,743 - TX73_024320 0.52 -1.9 5,277,750 - TX73_024320 0.53 -0.1 5,277,771 + TX73_024320 0.56 -0.1 5,277,783 + TX73_024320 0.57 +1.1 5,277,791 - TX73_024320 0.58 -0.9 5,277,791 - TX73_024320 0.58 -0.3 5,277,793 + TX73_024320 0.58 +0.2 5,277,818 + TX73_024320 0.61 -0.5 5,277,873 + TX73_024320 0.67 -0.2 5,277,879 + TX73_024320 0.68 +0.3 5,277,883 + TX73_024320 0.68 +0.4 5,277,887 - TX73_024320 0.69 +0.2 5,277,928 - TX73_024320 0.73 -0.2 5,277,995 + TX73_024320 0.81 +0.5 5,278,008 + TX73_024320 0.82 -1.0 5,278,062 + TX73_024320 0.88 +0.4 5,278,116 + +0.5 5,278,148 - -0.3 5,278,169 + +0.1 5,278,185 - +0.7 5,278,204 - +0.1 5,278,240 - +0.8 5,278,243 + -1.3 5,278,250 - -0.5 5,278,255 - -0.8 5,278,289 - +0.5 5,278,310 - -0.0 5,278,445 - +0.5 5,278,501 - TX73_024325 0.11 +0.0 5,278,525 - TX73_024325 0.11 +0.2 5,278,528 + TX73_024325 0.12 +0.1 5,278,581 - TX73_024325 0.13 +0.3 5,278,663 + TX73_024325 0.16 -0.9 5,278,679 + TX73_024325 0.16 -0.5 5,278,746 + TX73_024325 0.18 -0.6 5,278,754 + TX73_024325 0.19 -0.2 5,278,754 - TX73_024325 0.19 -1.0 5,278,804 - TX73_024325 0.20 -0.3 5,278,887 - TX73_024325 0.23 +0.0 5,278,897 + TX73_024325 0.23 +0.2 5,278,934 - TX73_024325 0.24 -0.1 5,278,934 - TX73_024325 0.24 +0.2 5,278,972 + TX73_024325 0.26 -0.7 5,278,989 + TX73_024325 0.26 +0.1 5,278,997 - TX73_024325 0.26 +0.1 5,278,997 - TX73_024325 0.26 +0.4 5,279,038 - TX73_024325 0.28 +0.4 5,279,063 - TX73_024325 0.28 +0.1 5,279,063 - TX73_024325 0.28 -0.3 5,279,073 - TX73_024325 0.29 -0.8 5,279,108 - TX73_024325 0.30 -0.2 5,279,119 - TX73_024325 0.30 +1.0
Or see this region's nucleotide sequence