Experiment: PM_argon75_N2O25 butyrate and Chloride 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_003510 and TX73_003515 are separated by 23 nucleotides TX73_003515 and TX73_003520 are separated by 66 nucleotides TX73_003520 and TX73_003525 are separated by 198 nucleotides
TX73_003510: TX73_003510 - NADPH-dependent glutamate synthase, at 749,990 to 752,974
_003510
TX73_003515: TX73_003515 - YgiQ family radical SAM protein, at 752,998 to 755,031
_003515
TX73_003520: TX73_003520 - TetR/AcrR family transcriptional regulator, at 755,098 to 755,661
_003520
TX73_003525: TX73_003525 - efflux RND transporter periplasmic adaptor subunit, at 755,860 to 756,891
_003525
Position (kb) 752
753
754
755
756 Strain fitness (log2 ratio) -2
-1
0
1
2 at 752.058 kb on - strand, within TX73_003510 at 752.124 kb on + strand, within TX73_003510 at 752.150 kb on + strand, within TX73_003510 at 752.230 kb on - strand, within TX73_003510 at 752.235 kb on + strand, within TX73_003510 at 752.266 kb on + strand, within TX73_003510 at 752.266 kb on + strand, within TX73_003510 at 752.266 kb on + strand, within TX73_003510 at 752.274 kb on - strand, within TX73_003510 at 752.319 kb on + strand, within TX73_003510 at 752.336 kb on - strand, within TX73_003510 at 752.346 kb on + strand, within TX73_003510 at 752.355 kb on + strand, within TX73_003510 at 752.363 kb on - strand, within TX73_003510 at 752.381 kb on - strand, within TX73_003510 at 752.430 kb on + strand, within TX73_003510 at 752.456 kb on - strand, within TX73_003510 at 752.532 kb on + strand, within TX73_003510 at 752.540 kb on - strand, within TX73_003510 at 752.540 kb on - strand, within TX73_003510 at 752.540 kb on - strand, within TX73_003510 at 752.582 kb on + strand, within TX73_003510 at 752.635 kb on - strand, within TX73_003510 at 752.654 kb on - strand, within TX73_003510 at 752.675 kb on - strand, within TX73_003510 at 752.685 kb on - strand at 752.726 kb on - strand at 752.775 kb on + strand at 752.810 kb on - strand at 752.810 kb on - strand at 752.827 kb on - strand at 752.928 kb on - strand at 752.951 kb on + strand at 752.971 kb on - strand at 752.973 kb on - strand at 752.999 kb on + strand at 753.136 kb on + strand at 753.158 kb on + strand at 753.160 kb on + strand at 753.177 kb on + strand at 753.195 kb on + strand at 753.237 kb on - strand, within TX73_003515 at 753.242 kb on + strand, within TX73_003515 at 753.242 kb on + strand, within TX73_003515 at 753.250 kb on - strand, within TX73_003515 at 753.258 kb on - strand, within TX73_003515 at 753.264 kb on + strand, within TX73_003515 at 753.340 kb on + strand, within TX73_003515 at 753.341 kb on + strand, within TX73_003515 at 753.349 kb on + strand, within TX73_003515 at 753.575 kb on - strand, within TX73_003515 at 753.704 kb on + strand, within TX73_003515 at 753.717 kb on - strand, within TX73_003515 at 753.718 kb on + strand, within TX73_003515 at 753.745 kb on + strand, within TX73_003515 at 753.745 kb on - strand, within TX73_003515 at 753.790 kb on - strand, within TX73_003515 at 753.886 kb on - strand, within TX73_003515 at 753.904 kb on + strand, within TX73_003515 at 753.928 kb on + strand, within TX73_003515 at 753.928 kb on + strand, within TX73_003515 at 753.936 kb on - strand, within TX73_003515 at 753.936 kb on - strand, within TX73_003515 at 753.936 kb on - strand, within TX73_003515 at 753.936 kb on - strand, within TX73_003515 at 753.936 kb on - strand, within TX73_003515 at 754.010 kb on - strand, within TX73_003515 at 754.017 kb on - strand, within TX73_003515 at 754.029 kb on - strand, within TX73_003515 at 754.056 kb on + strand, within TX73_003515 at 754.081 kb on + strand, within TX73_003515 at 754.128 kb on + strand, within TX73_003515 at 754.159 kb on - strand, within TX73_003515 at 754.161 kb on + strand, within TX73_003515 at 754.169 kb on - strand, within TX73_003515 at 754.219 kb on + strand, within TX73_003515 at 754.227 kb on - strand, within TX73_003515 at 754.229 kb on + strand, within TX73_003515 at 754.229 kb on + strand, within TX73_003515 at 754.229 kb on + strand, within TX73_003515 at 754.229 kb on + strand, within TX73_003515 at 754.248 kb on + strand, within TX73_003515 at 754.293 kb on - strand, within TX73_003515 at 754.365 kb on + strand, within TX73_003515 at 754.371 kb on - strand, within TX73_003515 at 754.373 kb on - strand, within TX73_003515 at 754.396 kb on - strand, within TX73_003515 at 754.412 kb on + strand, within TX73_003515 at 754.453 kb on + strand, within TX73_003515 at 754.472 kb on + strand, within TX73_003515 at 754.472 kb on + strand, within TX73_003515 at 754.474 kb on - strand, within TX73_003515 at 754.480 kb on - strand, within TX73_003515 at 754.532 kb on + strand, within TX73_003515 at 754.585 kb on - strand, within TX73_003515 at 754.595 kb on - strand, within TX73_003515 at 754.599 kb on + strand, within TX73_003515 at 754.599 kb on + strand, within TX73_003515 at 754.604 kb on + strand, within TX73_003515 at 754.612 kb on - strand, within TX73_003515 at 754.612 kb on - strand, within TX73_003515 at 754.612 kb on - strand, within TX73_003515 at 754.612 kb on - strand, within TX73_003515 at 754.616 kb on + strand, within TX73_003515 at 754.641 kb on - strand, within TX73_003515 at 754.653 kb on + strand, within TX73_003515 at 754.666 kb on + strand, within TX73_003515 at 754.671 kb on + strand, within TX73_003515 at 754.710 kb on + strand, within TX73_003515 at 754.770 kb on + strand, within TX73_003515 at 754.778 kb on - strand, within TX73_003515 at 754.778 kb on - strand, within TX73_003515 at 754.916 kb on - strand at 754.916 kb on - strand at 754.918 kb on - strand at 754.921 kb on - strand at 754.923 kb on + strand at 754.956 kb on + strand at 754.961 kb on + strand at 754.966 kb on + strand at 754.969 kb on - strand at 754.971 kb on + strand at 755.007 kb on + strand at 755.018 kb on + strand at 755.023 kb on + strand at 755.026 kb on - strand at 755.031 kb on - strand at 755.036 kb on - strand at 755.047 kb on - strand at 755.061 kb on + strand at 755.073 kb on + strand at 755.157 kb on + strand, within TX73_003520 at 755.162 kb on + strand, within TX73_003520 at 755.165 kb on - strand, within TX73_003520 at 755.165 kb on - strand, within TX73_003520 at 755.167 kb on + strand, within TX73_003520 at 755.179 kb on + strand, within TX73_003520 at 755.186 kb on + strand, within TX73_003520 at 755.194 kb on + strand, within TX73_003520 at 755.194 kb on - strand, within TX73_003520 at 755.194 kb on - strand, within TX73_003520 at 755.221 kb on + strand, within TX73_003520 at 755.229 kb on - strand, within TX73_003520 at 755.236 kb on - strand, within TX73_003520 at 755.236 kb on - strand, within TX73_003520 at 755.242 kb on + strand, within TX73_003520 at 755.242 kb on + strand, within TX73_003520 at 755.242 kb on + strand, within TX73_003520 at 755.242 kb on + strand, within TX73_003520 at 755.242 kb on + strand, within TX73_003520 at 755.242 kb on + strand, within TX73_003520 at 755.242 kb on + strand, within TX73_003520 at 755.247 kb on + strand, within TX73_003520 at 755.250 kb on - strand, within TX73_003520 at 755.250 kb on - strand, within TX73_003520 at 755.250 kb on - strand, within TX73_003520 at 755.286 kb on + strand, within TX73_003520 at 755.291 kb on + strand, within TX73_003520 at 755.300 kb on - strand, within TX73_003520 at 755.319 kb on + strand, within TX73_003520 at 755.321 kb on - strand, within TX73_003520 at 755.351 kb on + strand, within TX73_003520 at 755.361 kb on + strand, within TX73_003520 at 755.369 kb on - strand, within TX73_003520 at 755.416 kb on + strand, within TX73_003520 at 755.428 kb on - strand, within TX73_003520 at 755.474 kb on - strand, within TX73_003520 at 755.474 kb on - strand, within TX73_003520 at 755.493 kb on - strand, within TX73_003520 at 755.498 kb on - strand, within TX73_003520 at 755.550 kb on + strand, within TX73_003520 at 755.558 kb on - strand, within TX73_003520 at 755.580 kb on - strand, within TX73_003520 at 755.611 kb on - strand at 755.626 kb on + strand at 755.629 kb on - strand at 755.634 kb on - strand at 755.634 kb on - strand at 755.635 kb on - strand at 755.639 kb on - strand at 755.639 kb on - strand at 755.688 kb on - strand at 755.721 kb on - strand at 755.786 kb on - strand at 755.791 kb on - strand at 755.806 kb on + strand at 755.816 kb on + strand at 755.819 kb on - strand at 755.830 kb on + strand at 755.837 kb on + strand at 755.845 kb on - strand at 755.853 kb on - strand at 755.888 kb on + strand at 755.890 kb on + strand at 755.898 kb on + strand at 755.910 kb on + strand at 755.916 kb on - strand at 755.918 kb on - strand at 755.918 kb on - strand at 755.920 kb on - strand at 755.986 kb on - strand, within TX73_003525 at 756.004 kb on + strand, within TX73_003525 at 756.012 kb on - strand, within TX73_003525
Per-strain Table
Position Strand Gene LocusTag Fraction PM_argon75_N2O25 butyrate and Chloride 0.1 mM remove 752,058 - TX73_003510 0.69 -0.1 752,124 + TX73_003510 0.71 -0.3 752,150 + TX73_003510 0.72 +0.6 752,230 - TX73_003510 0.75 -0.5 752,235 + TX73_003510 0.75 +0.1 752,266 + TX73_003510 0.76 +0.4 752,266 + TX73_003510 0.76 +0.3 752,266 + TX73_003510 0.76 +0.6 752,274 - TX73_003510 0.77 +0.9 752,319 + TX73_003510 0.78 +0.4 752,336 - TX73_003510 0.79 +0.5 752,346 + TX73_003510 0.79 +0.5 752,355 + TX73_003510 0.79 -1.2 752,363 - TX73_003510 0.79 +1.6 752,381 - TX73_003510 0.80 +0.4 752,430 + TX73_003510 0.82 -0.1 752,456 - TX73_003510 0.83 +0.3 752,532 + TX73_003510 0.85 -0.6 752,540 - TX73_003510 0.85 -0.1 752,540 - TX73_003510 0.85 -0.2 752,540 - TX73_003510 0.85 +0.4 752,582 + TX73_003510 0.87 -0.4 752,635 - TX73_003510 0.89 +1.8 752,654 - TX73_003510 0.89 -1.2 752,675 - TX73_003510 0.90 +1.4 752,685 - +0.6 752,726 - -0.4 752,775 + +2.1 752,810 - +0.2 752,810 - -0.0 752,827 - +0.8 752,928 - +0.7 752,951 + +0.7 752,971 - -0.7 752,973 - +0.8 752,999 + -0.3 753,136 + -0.5 753,158 + -0.9 753,160 + +0.3 753,177 + +0.0 753,195 + +0.2 753,237 - TX73_003515 0.12 -1.1 753,242 + TX73_003515 0.12 -0.2 753,242 + TX73_003515 0.12 +0.0 753,250 - TX73_003515 0.12 -0.1 753,258 - TX73_003515 0.13 +0.3 753,264 + TX73_003515 0.13 -0.5 753,340 + TX73_003515 0.17 -0.4 753,341 + TX73_003515 0.17 -0.3 753,349 + TX73_003515 0.17 -0.2 753,575 - TX73_003515 0.28 -0.0 753,704 + TX73_003515 0.35 +0.9 753,717 - TX73_003515 0.35 -0.3 753,718 + TX73_003515 0.35 +0.5 753,745 + TX73_003515 0.37 +0.6 753,745 - TX73_003515 0.37 -0.7 753,790 - TX73_003515 0.39 +0.4 753,886 - TX73_003515 0.44 -0.1 753,904 + TX73_003515 0.45 -0.9 753,928 + TX73_003515 0.46 -0.3 753,928 + TX73_003515 0.46 +0.3 753,936 - TX73_003515 0.46 +0.0 753,936 - TX73_003515 0.46 +0.4 753,936 - TX73_003515 0.46 -0.6 753,936 - TX73_003515 0.46 -0.1 753,936 - TX73_003515 0.46 -0.2 754,010 - TX73_003515 0.50 -0.1 754,017 - TX73_003515 0.50 +0.1 754,029 - TX73_003515 0.51 -0.6 754,056 + TX73_003515 0.52 +0.3 754,081 + TX73_003515 0.53 -0.9 754,128 + TX73_003515 0.56 -0.7 754,159 - TX73_003515 0.57 -0.0 754,161 + TX73_003515 0.57 -0.5 754,169 - TX73_003515 0.58 +0.6 754,219 + TX73_003515 0.60 -0.6 754,227 - TX73_003515 0.60 -0.3 754,229 + TX73_003515 0.61 -0.8 754,229 + TX73_003515 0.61 +0.6 754,229 + TX73_003515 0.61 -0.1 754,229 + TX73_003515 0.61 -0.2 754,248 + TX73_003515 0.61 +0.2 754,293 - TX73_003515 0.64 -1.0 754,365 + TX73_003515 0.67 +0.4 754,371 - TX73_003515 0.68 -1.3 754,373 - TX73_003515 0.68 +1.2 754,396 - TX73_003515 0.69 +0.1 754,412 + TX73_003515 0.70 -0.7 754,453 + TX73_003515 0.72 +0.7 754,472 + TX73_003515 0.72 -1.4 754,472 + TX73_003515 0.72 -0.7 754,474 - TX73_003515 0.73 +0.4 754,480 - TX73_003515 0.73 +1.2 754,532 + TX73_003515 0.75 -0.1 754,585 - TX73_003515 0.78 -0.1 754,595 - TX73_003515 0.79 -0.2 754,599 + TX73_003515 0.79 -0.3 754,599 + TX73_003515 0.79 +1.6 754,604 + TX73_003515 0.79 +0.4 754,612 - TX73_003515 0.79 -0.4 754,612 - TX73_003515 0.79 -0.3 754,612 - TX73_003515 0.79 -0.3 754,612 - TX73_003515 0.79 -0.0 754,616 + TX73_003515 0.80 +1.6 754,641 - TX73_003515 0.81 -0.9 754,653 + TX73_003515 0.81 +0.3 754,666 + TX73_003515 0.82 -1.3 754,671 + TX73_003515 0.82 -0.5 754,710 + TX73_003515 0.84 -0.5 754,770 + TX73_003515 0.87 -0.6 754,778 - TX73_003515 0.88 -0.6 754,778 - TX73_003515 0.88 -0.3 754,916 - +0.3 754,916 - -0.2 754,918 - -0.6 754,921 - -0.7 754,923 + -0.2 754,956 + -0.6 754,961 + -0.7 754,966 + -0.1 754,969 - -0.2 754,971 + -0.3 755,007 + +0.5 755,018 + -1.0 755,023 + -1.0 755,026 - -0.1 755,031 - +0.2 755,036 - -0.1 755,047 - -1.0 755,061 + -0.5 755,073 + +0.8 755,157 + TX73_003520 0.10 -0.4 755,162 + TX73_003520 0.11 +1.1 755,165 - TX73_003520 0.12 +0.0 755,165 - TX73_003520 0.12 -0.1 755,167 + TX73_003520 0.12 -0.0 755,179 + TX73_003520 0.14 -0.4 755,186 + TX73_003520 0.16 -0.4 755,194 + TX73_003520 0.17 -0.4 755,194 - TX73_003520 0.17 -0.2 755,194 - TX73_003520 0.17 +0.5 755,221 + TX73_003520 0.22 -0.4 755,229 - TX73_003520 0.23 +0.1 755,236 - TX73_003520 0.24 +0.1 755,236 - TX73_003520 0.24 -1.4 755,242 + TX73_003520 0.26 +0.6 755,242 + TX73_003520 0.26 +0.1 755,242 + TX73_003520 0.26 -1.2 755,242 + TX73_003520 0.26 -0.3 755,242 + TX73_003520 0.26 +0.1 755,242 + TX73_003520 0.26 +0.1 755,242 + TX73_003520 0.26 +0.7 755,247 + TX73_003520 0.26 +1.9 755,250 - TX73_003520 0.27 -0.4 755,250 - TX73_003520 0.27 +0.3 755,250 - TX73_003520 0.27 +0.4 755,286 + TX73_003520 0.33 -0.4 755,291 + TX73_003520 0.34 -1.3 755,300 - TX73_003520 0.36 -0.2 755,319 + TX73_003520 0.39 -1.2 755,321 - TX73_003520 0.40 -0.3 755,351 + TX73_003520 0.45 +0.5 755,361 + TX73_003520 0.47 -0.3 755,369 - TX73_003520 0.48 -1.2 755,416 + TX73_003520 0.56 +0.3 755,428 - TX73_003520 0.59 -0.7 755,474 - TX73_003520 0.67 -0.0 755,474 - TX73_003520 0.67 -0.4 755,493 - TX73_003520 0.70 +0.3 755,498 - TX73_003520 0.71 -1.8 755,550 + TX73_003520 0.80 +0.6 755,558 - TX73_003520 0.82 -0.7 755,580 - TX73_003520 0.85 -0.2 755,611 - -0.4 755,626 + +0.2 755,629 - +0.1 755,634 - -0.3 755,634 - +1.0 755,635 - -0.6 755,639 - -0.6 755,639 - -0.4 755,688 - -0.7 755,721 - -1.4 755,786 - +0.3 755,791 - +0.0 755,806 + -0.3 755,816 + -0.2 755,819 - +1.2 755,830 + +0.2 755,837 + +0.3 755,845 - +0.4 755,853 - -0.2 755,888 + -0.0 755,890 + +0.4 755,898 + +0.3 755,910 + +0.3 755,916 - -0.6 755,918 - -0.1 755,918 - +0.2 755,920 - -0.2 755,986 - TX73_003525 0.12 +0.3 756,004 + TX73_003525 0.14 -0.1 756,012 - TX73_003525 0.15 -1.0
Or see this region's nucleotide sequence