Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_018210

Experiment: PM_argon75_N2O25 butyrate and Chloride 0.1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM_argon75_N2O25 butyrate and Chloride 0.1 mM
3,968,478	+		TX73_018200	0.89	+0.0
3,968,478	+		TX73_018200	0.89	-0.3
3,968,486	-		TX73_018200	0.89	-0.7
3,968,486	-		TX73_018200	0.89	-1.9
3,968,496	-		TX73_018200	0.90	-0.7
3,968,496	-		TX73_018200	0.90	+0.0
3,968,496	-		TX73_018200	0.90	-0.6
3,968,535	+				-0.2
3,968,544	+				-1.5
3,968,544	+				-0.3
3,968,546	+				+0.1
3,968,552	-				-1.5
3,968,552	-				+0.2
3,968,552	-				-0.3
3,968,552	-				-0.0
3,968,552	-				-0.3
3,968,554	-				-0.5
3,968,562	+				+0.1
3,968,565	+				-1.0
3,968,638	-				-0.9
3,968,677	-				+0.6
3,968,727	+				-1.3
3,968,727	+				-0.5
3,968,734	+				+0.1
3,968,735	-				-0.9
3,968,735	-				-0.6
3,968,735	-				-0.4
3,968,735	-				+0.5
3,968,746	+				+1.8
3,968,754	-				+0.3
3,968,772	+		TX73_018205	0.14	+0.3
3,968,773	+		TX73_018205	0.14	-0.1
3,968,773	+		TX73_018205	0.14	+0.4
3,968,773	+		TX73_018205	0.14	+0.1
3,968,773	+		TX73_018205	0.14	+0.7
3,968,773	+		TX73_018205	0.14	-0.5
3,968,781	-		TX73_018205	0.17	-0.9
3,968,781	-		TX73_018205	0.17	-0.1
3,968,805	+		TX73_018205	0.24	-2.0
3,968,815	+		TX73_018205	0.28	+1.0
3,968,831	+		TX73_018205	0.33	+0.5
3,968,836	-		TX73_018205	0.35	+0.6
3,968,851	+		TX73_018205	0.40	-0.1
3,968,859	-		TX73_018205	0.42	+0.3
3,968,898	-		TX73_018205	0.55	-0.1
3,968,898	-		TX73_018205	0.55	+0.8
3,968,908	+		TX73_018205	0.58	+0.8
3,968,908	+		TX73_018205	0.58	-1.9
3,968,913	+		TX73_018205	0.60	+0.0
3,968,916	-		TX73_018205	0.61	+1.5
3,968,944	-		TX73_018205	0.70	+0.5
3,968,945	+		TX73_018205	0.71	+0.2
3,968,964	-		TX73_018205	0.77	+0.6
3,968,995	+		TX73_018205	0.87	-1.2
3,969,028	+				+1.5
3,969,039	-				-0.1
3,969,044	-				+0.0
3,969,049	-				+0.2
3,969,051	+				+0.4
3,969,078	+				+0.3
3,969,084	+				+0.1
3,969,086	-				+0.1
3,969,086	-				+0.8
3,969,111	+				+0.2
3,969,118	+				+0.0
3,969,173	+				-1.9
3,969,173	+				-0.1
3,969,188	+				-1.3
3,969,188	+				+0.0
3,969,190	+				-0.2
3,969,238	+				-1.1
3,969,240	+				+0.0
3,969,306	+				-0.5
3,969,306	+				-0.3
3,969,306	+				+0.2
3,969,314	-				+0.4
3,969,337	+				+0.3
3,969,381	-				-0.3
3,969,392	+				+0.6
3,969,399	-				+0.5
3,969,463	+				+0.3
3,969,464	+				-0.0
3,969,464	+				+0.3
3,969,471	-				-0.1
3,969,471	-				+0.2
3,969,471	-				-0.4
3,969,481	-				-0.1
3,969,481	-				-0.4
3,969,481	-				-0.7
3,969,492	-				+0.3
3,969,498	+				-0.4
3,969,506	-				+1.1
3,969,516	-				-0.8
3,969,516	-				-0.2
3,969,516	-				-0.8
3,969,520	+				-0.3
3,969,522	+				-0.3
3,969,528	-				-0.4
3,969,530	-				-0.4
3,969,535	+				-0.8
3,969,535	-				-0.1
3,969,544	+				-0.1
3,969,544	+				-1.2
3,969,573	-		TX73_018210	0.11	+0.3
3,969,573	-		TX73_018210	0.11	+0.3
3,969,594	+		TX73_018210	0.13	+0.3
3,969,603	+		TX73_018210	0.14	+0.2
3,969,647	+		TX73_018210	0.19	+0.8
3,969,647	+		TX73_018210	0.19	+1.0
3,969,655	-		TX73_018210	0.20	+0.6
3,969,655	-		TX73_018210	0.20	+0.3
3,969,692	+		TX73_018210	0.24	+0.9
3,969,700	-		TX73_018210	0.25	+0.1
3,969,725	-		TX73_018210	0.28	+0.7
3,969,730	+		TX73_018210	0.28	-0.1
3,969,737	+		TX73_018210	0.29	-0.1
3,969,763	+		TX73_018210	0.32	+0.2
3,969,763	+		TX73_018210	0.32	-1.3
3,969,771	-		TX73_018210	0.33	+0.5
3,969,771	-		TX73_018210	0.33	+0.7
3,969,777	-		TX73_018210	0.34	+1.1
3,969,803	-		TX73_018210	0.37	-0.4
3,969,808	-		TX73_018210	0.37	-0.2
3,969,829	-		TX73_018210	0.40	-0.5
3,969,853	+		TX73_018210	0.42	-0.3
3,969,866	-		TX73_018210	0.44	+0.2
3,969,871	+		TX73_018210	0.44	+0.4
3,969,871	+		TX73_018210	0.44	+0.0
3,969,874	-		TX73_018210	0.45	-0.5
3,969,881	+		TX73_018210	0.45	+0.5
3,969,881	+		TX73_018210	0.45	-1.4
3,969,891	+		TX73_018210	0.46	+1.0
3,969,899	-		TX73_018210	0.47	-0.3
3,969,901	+		TX73_018210	0.48	+0.8
3,969,901	+		TX73_018210	0.48	-0.2
3,969,901	+		TX73_018210	0.48	-0.2
3,969,901	+		TX73_018210	0.48	-0.5
3,969,901	+		TX73_018210	0.48	-0.3
3,969,901	+		TX73_018210	0.48	+0.1
3,969,901	+		TX73_018210	0.48	+0.2
3,969,909	-		TX73_018210	0.48	-0.5
3,969,911	+		TX73_018210	0.49	-1.5
3,969,916	+		TX73_018210	0.49	+0.2
3,969,916	+		TX73_018210	0.49	+0.4
3,969,924	-		TX73_018210	0.50	+0.7
3,969,924	-		TX73_018210	0.50	-0.3
3,969,924	-		TX73_018210	0.50	-1.2
3,969,924	-		TX73_018210	0.50	+0.6
3,969,929	-		TX73_018210	0.51	-0.0
3,970,004	+		TX73_018210	0.59	-0.5
3,970,004	+		TX73_018210	0.59	+0.6
3,970,004	+		TX73_018210	0.59	+1.0
3,970,004	+		TX73_018210	0.59	-1.5
3,970,004	+		TX73_018210	0.59	-0.1
3,970,004	+		TX73_018210	0.59	+0.5
3,970,004	+		TX73_018210	0.59	+0.6
3,970,004	+		TX73_018210	0.59	-0.1
3,970,004	+		TX73_018210	0.59	+1.4
3,970,006	+		TX73_018210	0.59	+0.1
3,970,006	+		TX73_018210	0.59	+0.6
3,970,007	-		TX73_018210	0.59	+0.3
3,970,012	-		TX73_018210	0.60	-0.1
3,970,014	-		TX73_018210	0.60	+0.2
3,970,078	-		TX73_018210	0.67	-0.1
3,970,078	-		TX73_018210	0.67	-0.8
3,970,082	+		TX73_018210	0.68	+0.9
3,970,099	-		TX73_018210	0.70	-0.6
3,970,121	-		TX73_018210	0.72	-0.7
3,970,138	+		TX73_018210	0.74	+0.6
3,970,146	-		TX73_018210	0.75	+0.9
3,970,200	-		TX73_018210	0.81	-1.0
3,970,200	-		TX73_018210	0.81	+0.5
3,970,200	-		TX73_018210	0.81	+0.0
3,970,200	-		TX73_018210	0.81	+0.2
3,970,220	+		TX73_018210	0.83	-0.0
3,970,243	+		TX73_018210	0.86	+0.3
3,970,243	+		TX73_018210	0.86	-0.4
3,970,251	-		TX73_018210	0.87	-0.2
3,970,256	-		TX73_018210	0.87	+0.5
3,970,266	+		TX73_018210	0.89	+0.0
3,970,286	-				-0.5
3,970,295	+				+0.0
3,970,305	+				+0.3
3,970,340	-				+0.2
3,970,342	+				-0.1
3,970,342	+				+0.7
3,970,350	-				+0.6
3,970,360	-				-0.2
3,970,385	-				+0.5
3,970,390	+				-0.8
3,970,410	-				-0.7
3,970,410	-				+0.6
3,970,461	-		TX73_018215	0.35	+0.3
3,970,472	+		TX73_018215	0.41	-1.1
3,970,473	+		TX73_018215	0.42	+0.6
3,970,480	-		TX73_018215	0.45	-0.5
3,970,487	+		TX73_018215	0.49	-0.4
3,970,487	+		TX73_018215	0.49	+0.6
3,970,497	-		TX73_018215	0.54	-0.1
3,970,502	+		TX73_018215	0.56	-1.0
3,970,516	+		TX73_018215	0.64	-2.2
3,970,524	-		TX73_018215	0.68	+1.0
3,970,588	+				+0.3
3,970,588	+				+0.1
3,970,588	-				-0.0
3,970,596	-				-0.8
3,970,596	-				-2.1
3,970,616	-				-0.1
3,970,628	+				-1.0
3,970,655	+				-0.6
3,970,658	-				-1.2
3,970,752	+				+0.7
3,970,761	+				+1.2
3,970,769	-				-0.2
3,970,770	-				+0.9
3,970,804	+				+0.1
3,970,812	-				-0.3
3,970,953	+				-0.5
3,970,991	-		TX73_018220	0.11	+0.6
3,970,991	-		TX73_018220	0.11	-0.9
3,971,018	+		TX73_018220	0.13	-0.7
3,971,026	-		TX73_018220	0.13	-0.0
3,971,047	+		TX73_018220	0.14	-0.0
3,971,055	-		TX73_018220	0.15	-0.2
3,971,060	-		TX73_018220	0.15	-1.8
3,971,066	-		TX73_018220	0.16	-0.6
3,971,113	+		TX73_018220	0.18	-0.1
3,971,121	-		TX73_018220	0.19	-1.9
3,971,144	+		TX73_018220	0.20	+0.3
3,971,144	-		TX73_018220	0.20	-0.4
3,971,157	-		TX73_018220	0.20	-2.6
3,971,197	-		TX73_018220	0.23	-1.1
3,971,197	-		TX73_018220	0.23	-0.8
3,971,197	-		TX73_018220	0.23	-0.3
3,971,210	+		TX73_018220	0.23	-1.4
3,971,210	+		TX73_018220	0.23	-0.1
3,971,218	-		TX73_018220	0.24	-0.4
3,971,223	-		TX73_018220	0.24	-0.6
3,971,223	-		TX73_018220	0.24	-0.8
3,971,254	-		TX73_018220	0.26	-1.1
3,971,256	+		TX73_018220	0.26	-0.3
3,971,259	-		TX73_018220	0.26	+0.0
3,971,264	-		TX73_018220	0.26	-1.3
3,971,264	-		TX73_018220	0.26	+1.1
3,971,264	-		TX73_018220	0.26	+1.0
3,971,264	-		TX73_018220	0.26	-1.5
3,971,282	+		TX73_018220	0.27	-2.2
3,971,290	-		TX73_018220	0.28	-0.4
3,971,306	-		TX73_018220	0.29	+0.9
3,971,366	-		TX73_018220	0.32	+1.9