Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003940

Experiment: PM_argon75_N2O25 butyrate and Chloride 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_003935 and TX73_003940 are separated by 329 nucleotidesTX73_003940 and TX73_003945 are separated by 55 nucleotidesTX73_003945 and TX73_003950 are separated by 20 nucleotides TX73_003935: TX73_003935 - ABC transporter substrate-binding protein, at 843,890 to 845,488 _003935 TX73_003940: TX73_003940 - class I SAM-dependent methyltransferase, at 845,818 to 846,435 _003940 TX73_003945: TX73_003945 - EF-hand domain-containing protein, at 846,491 to 846,925 _003945 TX73_003950: TX73_003950 - TonB-dependent receptor, at 846,946 to 849,309 _003950 Position (kb) 845 846 847Strain fitness (log2 ratio) -2 -1 0 1at 844.925 kb on - strand, within TX73_003935at 845.005 kb on + strand, within TX73_003935at 845.051 kb on - strand, within TX73_003935at 845.085 kb on + strand, within TX73_003935at 845.100 kb on + strand, within TX73_003935at 845.108 kb on + strand, within TX73_003935at 845.108 kb on + strand, within TX73_003935at 845.108 kb on + strand, within TX73_003935at 845.110 kb on + strand, within TX73_003935at 845.110 kb on + strand, within TX73_003935at 845.110 kb on + strand, within TX73_003935at 845.110 kb on + strand, within TX73_003935at 845.110 kb on + strand, within TX73_003935at 845.110 kb on + strand, within TX73_003935at 845.110 kb on + strand, within TX73_003935at 845.118 kb on - strand, within TX73_003935at 845.118 kb on - strand, within TX73_003935at 845.118 kb on - strand, within TX73_003935at 845.118 kb on - strand, within TX73_003935at 845.118 kb on - strand, within TX73_003935at 845.118 kb on - strand, within TX73_003935at 845.187 kb on + strand, within TX73_003935at 845.190 kb on - strand, within TX73_003935at 845.190 kb on - strand, within TX73_003935at 845.195 kb on - strand, within TX73_003935at 845.208 kb on - strand, within TX73_003935at 845.208 kb on - strand, within TX73_003935at 845.247 kb on + strand, within TX73_003935at 845.247 kb on + strand, within TX73_003935at 845.278 kb on + strand, within TX73_003935at 845.278 kb on - strand, within TX73_003935at 845.279 kb on + strand, within TX73_003935at 845.293 kb on + strand, within TX73_003935at 845.299 kb on + strand, within TX73_003935at 845.299 kb on + strand, within TX73_003935at 845.307 kb on - strand, within TX73_003935at 845.380 kb on + strandat 845.380 kb on + strandat 845.383 kb on - strandat 845.388 kb on - strandat 845.388 kb on - strandat 845.390 kb on + strandat 845.390 kb on - strandat 845.397 kb on + strandat 845.444 kb on + strandat 845.467 kb on + strandat 845.475 kb on - strandat 845.490 kb on - strandat 845.496 kb on + strandat 845.504 kb on - strandat 845.530 kb on - strandat 845.612 kb on + strandat 845.639 kb on + strandat 845.657 kb on - strandat 845.691 kb on + strandat 845.721 kb on + strandat 845.726 kb on + strandat 845.726 kb on + strandat 845.731 kb on + strandat 845.734 kb on - strandat 845.760 kb on - strandat 845.767 kb on + strandat 845.769 kb on + strandat 845.769 kb on + strandat 845.774 kb on + strandat 845.777 kb on - strandat 845.823 kb on - strandat 845.856 kb on + strandat 845.856 kb on + strandat 845.856 kb on + strandat 845.856 kb on + strandat 845.856 kb on + strandat 845.859 kb on - strandat 845.864 kb on - strandat 846.102 kb on + strand, within TX73_003940at 846.117 kb on + strand, within TX73_003940at 846.178 kb on - strand, within TX73_003940at 846.187 kb on + strand, within TX73_003940at 846.198 kb on + strand, within TX73_003940at 846.206 kb on - strand, within TX73_003940at 846.222 kb on + strand, within TX73_003940at 846.251 kb on + strand, within TX73_003940at 846.269 kb on - strand, within TX73_003940at 846.283 kb on - strand, within TX73_003940at 846.333 kb on + strand, within TX73_003940at 846.374 kb on - strandat 846.502 kb on + strandat 846.553 kb on + strand, within TX73_003945at 846.586 kb on + strand, within TX73_003945at 846.586 kb on + strand, within TX73_003945at 846.622 kb on + strand, within TX73_003945at 846.630 kb on - strand, within TX73_003945at 846.661 kb on + strand, within TX73_003945at 846.674 kb on - strand, within TX73_003945at 846.674 kb on - strand, within TX73_003945at 846.699 kb on + strand, within TX73_003945at 846.710 kb on + strand, within TX73_003945at 846.718 kb on - strand, within TX73_003945at 846.837 kb on - strand, within TX73_003945at 846.855 kb on - strand, within TX73_003945at 846.994 kb on - strandat 847.125 kb on - strandat 847.129 kb on - strandat 847.131 kb on - strandat 847.131 kb on - strandat 847.209 kb on - strand, within TX73_003950at 847.209 kb on - strand, within TX73_003950at 847.219 kb on - strand, within TX73_003950at 847.278 kb on - strand, within TX73_003950at 847.332 kb on - strand, within TX73_003950at 847.346 kb on - strand, within TX73_003950

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Per-strain Table

Position Strand Gene LocusTag Fraction PM_argon75_N2O25 butyrate and Chloride 0.1 mM
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844,925 - TX73_003935 0.65 +0.6
845,005 + TX73_003935 0.70 +0.1
845,051 - TX73_003935 0.73 -0.9
845,085 + TX73_003935 0.75 -1.2
845,100 + TX73_003935 0.76 -0.0
845,108 + TX73_003935 0.76 -0.1
845,108 + TX73_003935 0.76 -0.4
845,108 + TX73_003935 0.76 +0.1
845,110 + TX73_003935 0.76 +0.0
845,110 + TX73_003935 0.76 -0.2
845,110 + TX73_003935 0.76 -0.5
845,110 + TX73_003935 0.76 -1.4
845,110 + TX73_003935 0.76 +0.8
845,110 + TX73_003935 0.76 +0.5
845,110 + TX73_003935 0.76 -0.4
845,118 - TX73_003935 0.77 +0.2
845,118 - TX73_003935 0.77 +0.2
845,118 - TX73_003935 0.77 +0.0
845,118 - TX73_003935 0.77 +0.1
845,118 - TX73_003935 0.77 -0.5
845,118 - TX73_003935 0.77 -0.1
845,187 + TX73_003935 0.81 -0.3
845,190 - TX73_003935 0.81 -1.7
845,190 - TX73_003935 0.81 -0.4
845,195 - TX73_003935 0.82 -0.4
845,208 - TX73_003935 0.82 -0.5
845,208 - TX73_003935 0.82 +0.2
845,247 + TX73_003935 0.85 +0.0
845,247 + TX73_003935 0.85 -0.1
845,278 + TX73_003935 0.87 +0.8
845,278 - TX73_003935 0.87 -0.7
845,279 + TX73_003935 0.87 +0.5
845,293 + TX73_003935 0.88 -0.7
845,299 + TX73_003935 0.88 +0.1
845,299 + TX73_003935 0.88 +0.5
845,307 - TX73_003935 0.89 -0.9
845,380 + +0.1
845,380 + +0.2
845,383 - -0.7
845,388 - -0.3
845,388 - +0.6
845,390 + -0.1
845,390 - -0.0
845,397 + -0.2
845,444 + -0.5
845,467 + -0.3
845,475 - +0.1
845,490 - -0.4
845,496 + +0.2
845,504 - -0.9
845,530 - +0.6
845,612 + +0.6
845,639 + -0.3
845,657 - -0.6
845,691 + -0.0
845,721 + +0.7
845,726 + +0.7
845,726 + -0.4
845,731 + +0.3
845,734 - +0.5
845,760 - -0.5
845,767 + -0.5
845,769 + -1.2
845,769 + +0.5
845,774 + +0.1
845,777 - +0.3
845,823 - +0.8
845,856 + +0.5
845,856 + +0.0
845,856 + +0.1
845,856 + -1.1
845,856 + +0.1
845,859 - -0.5
845,864 - -0.3
846,102 + TX73_003940 0.46 -0.7
846,117 + TX73_003940 0.48 -0.3
846,178 - TX73_003940 0.58 +0.0
846,187 + TX73_003940 0.60 -1.0
846,198 + TX73_003940 0.61 -0.6
846,206 - TX73_003940 0.63 +0.5
846,222 + TX73_003940 0.65 -1.4
846,251 + TX73_003940 0.70 -0.3
846,269 - TX73_003940 0.73 -0.9
846,283 - TX73_003940 0.75 -0.5
846,333 + TX73_003940 0.83 -1.0
846,374 - -1.8
846,502 + -0.0
846,553 + TX73_003945 0.14 +0.7
846,586 + TX73_003945 0.22 -2.0
846,586 + TX73_003945 0.22 -0.0
846,622 + TX73_003945 0.30 +0.5
846,630 - TX73_003945 0.32 -0.8
846,661 + TX73_003945 0.39 -1.0
846,674 - TX73_003945 0.42 -0.3
846,674 - TX73_003945 0.42 +0.0
846,699 + TX73_003945 0.48 +0.3
846,710 + TX73_003945 0.50 -0.4
846,718 - TX73_003945 0.52 -0.2
846,837 - TX73_003945 0.80 -0.1
846,855 - TX73_003945 0.84 +1.0
846,994 - -0.7
847,125 - -0.2
847,129 - -0.0
847,131 - +0.2
847,131 - -0.4
847,209 - TX73_003950 0.11 +0.9
847,209 - TX73_003950 0.11 +0.5
847,219 - TX73_003950 0.12 -0.8
847,278 - TX73_003950 0.14 -0.0
847,332 - TX73_003950 0.16 -0.1
847,346 - TX73_003950 0.17 -0.3

Or see this region's nucleotide sequence