Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002260

Experiment: PM_argon75_N2O25 butyrate and Chloride 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002255 and TX73_002260 overlap by 1 nucleotidesTX73_002260 and TX73_002265 are separated by 173 nucleotides TX73_002255: TX73_002255 - tRNA pseudouridine(55) synthase TruB, at 478,699 to 479,799 _002255 TX73_002260: TX73_002260 - 30S ribosome-binding factor RbfA, at 479,799 to 480,212 _002260 TX73_002265: TX73_002265 - translation initiation factor IF-2, at 480,386 to 483,037 _002265 Position (kb) 479 480 481Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 478.803 kb on - strandat 478.823 kb on - strand, within TX73_002255at 478.823 kb on - strand, within TX73_002255at 478.827 kb on - strand, within TX73_002255at 478.827 kb on - strand, within TX73_002255at 478.827 kb on - strand, within TX73_002255at 478.827 kb on - strand, within TX73_002255at 478.832 kb on - strand, within TX73_002255at 478.845 kb on - strand, within TX73_002255at 478.871 kb on - strand, within TX73_002255at 478.885 kb on - strand, within TX73_002255at 478.889 kb on - strand, within TX73_002255at 478.908 kb on - strand, within TX73_002255at 478.915 kb on - strand, within TX73_002255at 478.933 kb on - strand, within TX73_002255at 478.948 kb on - strand, within TX73_002255at 478.956 kb on - strand, within TX73_002255at 479.045 kb on + strand, within TX73_002255at 479.045 kb on + strand, within TX73_002255at 479.045 kb on + strand, within TX73_002255at 479.046 kb on + strand, within TX73_002255at 479.047 kb on + strand, within TX73_002255at 479.047 kb on + strand, within TX73_002255at 479.052 kb on + strand, within TX73_002255at 479.053 kb on - strand, within TX73_002255at 479.053 kb on - strand, within TX73_002255at 479.055 kb on - strand, within TX73_002255at 479.060 kb on - strand, within TX73_002255at 479.062 kb on + strand, within TX73_002255at 479.074 kb on + strand, within TX73_002255at 479.074 kb on + strand, within TX73_002255at 479.074 kb on + strand, within TX73_002255at 479.082 kb on - strand, within TX73_002255at 479.082 kb on - strand, within TX73_002255at 479.087 kb on - strand, within TX73_002255at 479.087 kb on - strand, within TX73_002255at 479.097 kb on - strand, within TX73_002255at 479.106 kb on + strand, within TX73_002255at 479.114 kb on - strand, within TX73_002255at 479.129 kb on - strand, within TX73_002255at 479.143 kb on - strand, within TX73_002255at 479.150 kb on + strand, within TX73_002255at 479.158 kb on - strand, within TX73_002255at 479.204 kb on + strand, within TX73_002255at 479.224 kb on - strand, within TX73_002255at 479.235 kb on - strand, within TX73_002255at 479.246 kb on + strand, within TX73_002255at 479.248 kb on - strand, within TX73_002255at 479.253 kb on + strand, within TX73_002255at 479.254 kb on - strand, within TX73_002255at 479.261 kb on - strand, within TX73_002255at 479.263 kb on - strand, within TX73_002255at 479.278 kb on - strand, within TX73_002255at 479.278 kb on - strand, within TX73_002255at 479.285 kb on + strand, within TX73_002255at 479.291 kb on - strand, within TX73_002255at 479.293 kb on - strand, within TX73_002255at 479.293 kb on - strand, within TX73_002255at 479.293 kb on - strand, within TX73_002255at 479.316 kb on + strand, within TX73_002255at 479.344 kb on + strand, within TX73_002255at 479.347 kb on - strand, within TX73_002255at 479.347 kb on - strand, within TX73_002255at 479.350 kb on - strand, within TX73_002255at 479.364 kb on + strand, within TX73_002255at 479.364 kb on + strand, within TX73_002255at 479.372 kb on - strand, within TX73_002255at 479.372 kb on - strand, within TX73_002255at 479.372 kb on - strand, within TX73_002255at 479.374 kb on + strand, within TX73_002255at 479.374 kb on + strand, within TX73_002255at 479.377 kb on - strand, within TX73_002255at 479.382 kb on - strand, within TX73_002255at 479.382 kb on - strand, within TX73_002255at 479.382 kb on - strand, within TX73_002255at 479.382 kb on - strand, within TX73_002255at 479.382 kb on - strand, within TX73_002255at 479.420 kb on + strand, within TX73_002255at 479.420 kb on + strand, within TX73_002255at 479.425 kb on + strand, within TX73_002255at 479.425 kb on + strand, within TX73_002255at 479.428 kb on - strand, within TX73_002255at 479.428 kb on - strand, within TX73_002255at 479.431 kb on + strand, within TX73_002255at 479.438 kb on + strand, within TX73_002255at 479.438 kb on - strand, within TX73_002255at 479.467 kb on - strand, within TX73_002255at 479.474 kb on + strand, within TX73_002255at 479.474 kb on + strand, within TX73_002255at 479.482 kb on - strand, within TX73_002255at 479.482 kb on - strand, within TX73_002255at 479.482 kb on - strand, within TX73_002255at 479.482 kb on - strand, within TX73_002255at 479.482 kb on - strand, within TX73_002255at 479.482 kb on - strand, within TX73_002255at 479.483 kb on + strand, within TX73_002255at 479.490 kb on - strand, within TX73_002255at 479.505 kb on + strand, within TX73_002255at 479.523 kb on - strand, within TX73_002255at 479.530 kb on + strand, within TX73_002255at 479.531 kb on - strand, within TX73_002255at 479.555 kb on + strand, within TX73_002255at 479.563 kb on - strand, within TX73_002255at 479.569 kb on + strand, within TX73_002255at 479.569 kb on + strand, within TX73_002255at 479.569 kb on + strand, within TX73_002255at 479.589 kb on + strand, within TX73_002255at 479.589 kb on + strand, within TX73_002255at 479.590 kb on + strand, within TX73_002255at 479.593 kb on - strand, within TX73_002255at 479.596 kb on + strand, within TX73_002255at 479.598 kb on - strand, within TX73_002255at 479.598 kb on - strand, within TX73_002255at 479.603 kb on - strand, within TX73_002255at 479.609 kb on + strand, within TX73_002255at 479.614 kb on + strand, within TX73_002255at 479.614 kb on + strand, within TX73_002255at 479.614 kb on + strand, within TX73_002255at 479.614 kb on + strand, within TX73_002255at 479.614 kb on + strand, within TX73_002255at 479.617 kb on - strand, within TX73_002255at 479.622 kb on - strand, within TX73_002255at 479.622 kb on - strand, within TX73_002255at 479.622 kb on - strand, within TX73_002255at 479.622 kb on - strand, within TX73_002255at 479.622 kb on - strand, within TX73_002255at 479.622 kb on - strand, within TX73_002255at 479.624 kb on + strand, within TX73_002255at 479.629 kb on + strand, within TX73_002255at 479.629 kb on + strand, within TX73_002255at 479.629 kb on + strand, within TX73_002255at 479.630 kb on - strand, within TX73_002255at 479.632 kb on - strand, within TX73_002255at 479.632 kb on - strand, within TX73_002255at 479.636 kb on + strand, within TX73_002255at 479.637 kb on - strand, within TX73_002255at 479.637 kb on - strand, within TX73_002255at 479.637 kb on - strand, within TX73_002255at 479.658 kb on + strand, within TX73_002255at 479.684 kb on + strand, within TX73_002255at 479.712 kb on + strandat 479.712 kb on + strandat 479.712 kb on + strandat 479.712 kb on + strandat 479.720 kb on - strandat 479.720 kb on - strandat 479.720 kb on - strandat 479.746 kb on + strandat 479.752 kb on - strandat 479.766 kb on - strandat 479.783 kb on - strandat 479.786 kb on - strandat 479.796 kb on - strandat 479.797 kb on + strandat 479.797 kb on + strandat 479.797 kb on + strandat 479.797 kb on + strandat 479.797 kb on + strandat 479.805 kb on - strandat 479.805 kb on - strandat 479.805 kb on - strandat 479.805 kb on - strandat 479.813 kb on + strandat 479.829 kb on + strandat 479.834 kb on + strandat 479.837 kb on - strandat 479.839 kb on + strandat 479.855 kb on - strand, within TX73_002260at 480.200 kb on - strandat 480.200 kb on - strandat 480.221 kb on + strandat 480.221 kb on + strandat 480.256 kb on + strandat 480.266 kb on + strandat 480.273 kb on - strandat 480.274 kb on - strandat 480.296 kb on + strandat 480.346 kb on - strandat 480.360 kb on - strandat 480.363 kb on + strandat 480.391 kb on - strandat 480.400 kb on + strandat 480.428 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM_argon75_N2O25 butyrate and Chloride 0.1 mM
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478,803 - +0.0
478,823 - TX73_002255 0.11 +0.7
478,823 - TX73_002255 0.11 +1.0
478,827 - TX73_002255 0.12 -0.0
478,827 - TX73_002255 0.12 +0.1
478,827 - TX73_002255 0.12 -0.4
478,827 - TX73_002255 0.12 -0.6
478,832 - TX73_002255 0.12 -0.2
478,845 - TX73_002255 0.13 -0.4
478,871 - TX73_002255 0.16 +0.5
478,885 - TX73_002255 0.17 -0.2
478,889 - TX73_002255 0.17 +0.8
478,908 - TX73_002255 0.19 +0.8
478,915 - TX73_002255 0.20 +0.1
478,933 - TX73_002255 0.21 +1.0
478,948 - TX73_002255 0.23 -0.9
478,956 - TX73_002255 0.23 +1.0
479,045 + TX73_002255 0.31 -0.6
479,045 + TX73_002255 0.31 -0.1
479,045 + TX73_002255 0.31 +1.2
479,046 + TX73_002255 0.32 +0.1
479,047 + TX73_002255 0.32 -0.4
479,047 + TX73_002255 0.32 +0.3
479,052 + TX73_002255 0.32 +3.2
479,053 - TX73_002255 0.32 -2.4
479,053 - TX73_002255 0.32 -0.1
479,055 - TX73_002255 0.32 +0.8
479,060 - TX73_002255 0.33 -0.3
479,062 + TX73_002255 0.33 -0.3
479,074 + TX73_002255 0.34 +0.1
479,074 + TX73_002255 0.34 -0.0
479,074 + TX73_002255 0.34 -0.3
479,082 - TX73_002255 0.35 -0.5
479,082 - TX73_002255 0.35 +0.6
479,087 - TX73_002255 0.35 -0.1
479,087 - TX73_002255 0.35 +1.5
479,097 - TX73_002255 0.36 +1.0
479,106 + TX73_002255 0.37 +0.3
479,114 - TX73_002255 0.38 -0.4
479,129 - TX73_002255 0.39 -0.4
479,143 - TX73_002255 0.40 -2.9
479,150 + TX73_002255 0.41 +0.8
479,158 - TX73_002255 0.42 +0.1
479,204 + TX73_002255 0.46 +0.2
479,224 - TX73_002255 0.48 +0.6
479,235 - TX73_002255 0.49 -0.2
479,246 + TX73_002255 0.50 -0.0
479,248 - TX73_002255 0.50 -1.2
479,253 + TX73_002255 0.50 +1.2
479,254 - TX73_002255 0.50 +0.5
479,261 - TX73_002255 0.51 +1.4
479,263 - TX73_002255 0.51 -0.8
479,278 - TX73_002255 0.53 +0.9
479,278 - TX73_002255 0.53 -0.4
479,285 + TX73_002255 0.53 +0.8
479,291 - TX73_002255 0.54 +0.7
479,293 - TX73_002255 0.54 -0.7
479,293 - TX73_002255 0.54 +0.0
479,293 - TX73_002255 0.54 -0.4
479,316 + TX73_002255 0.56 -0.4
479,344 + TX73_002255 0.59 -0.6
479,347 - TX73_002255 0.59 -1.0
479,347 - TX73_002255 0.59 -0.1
479,350 - TX73_002255 0.59 -0.3
479,364 + TX73_002255 0.60 -0.2
479,364 + TX73_002255 0.60 +0.5
479,372 - TX73_002255 0.61 +0.5
479,372 - TX73_002255 0.61 -0.7
479,372 - TX73_002255 0.61 -0.3
479,374 + TX73_002255 0.61 -0.2
479,374 + TX73_002255 0.61 +0.2
479,377 - TX73_002255 0.62 -0.9
479,382 - TX73_002255 0.62 -0.1
479,382 - TX73_002255 0.62 +1.0
479,382 - TX73_002255 0.62 +1.6
479,382 - TX73_002255 0.62 +0.7
479,382 - TX73_002255 0.62 -0.8
479,420 + TX73_002255 0.65 +1.0
479,420 + TX73_002255 0.65 +0.6
479,425 + TX73_002255 0.66 +0.4
479,425 + TX73_002255 0.66 +0.2
479,428 - TX73_002255 0.66 +0.1
479,428 - TX73_002255 0.66 +0.2
479,431 + TX73_002255 0.66 -0.5
479,438 + TX73_002255 0.67 -0.4
479,438 - TX73_002255 0.67 -0.1
479,467 - TX73_002255 0.70 +0.4
479,474 + TX73_002255 0.70 -0.5
479,474 + TX73_002255 0.70 +0.4
479,482 - TX73_002255 0.71 +0.0
479,482 - TX73_002255 0.71 -0.5
479,482 - TX73_002255 0.71 +0.5
479,482 - TX73_002255 0.71 +0.5
479,482 - TX73_002255 0.71 +1.3
479,482 - TX73_002255 0.71 -0.5
479,483 + TX73_002255 0.71 +0.1
479,490 - TX73_002255 0.72 -1.9
479,505 + TX73_002255 0.73 +0.4
479,523 - TX73_002255 0.75 +0.8
479,530 + TX73_002255 0.75 +0.3
479,531 - TX73_002255 0.76 +0.6
479,555 + TX73_002255 0.78 +1.6
479,563 - TX73_002255 0.78 -0.5
479,569 + TX73_002255 0.79 +1.5
479,569 + TX73_002255 0.79 -1.0
479,569 + TX73_002255 0.79 +0.7
479,589 + TX73_002255 0.81 +0.1
479,589 + TX73_002255 0.81 +0.7
479,590 + TX73_002255 0.81 -0.8
479,593 - TX73_002255 0.81 -0.4
479,596 + TX73_002255 0.81 -0.3
479,598 - TX73_002255 0.82 -0.3
479,598 - TX73_002255 0.82 +0.5
479,603 - TX73_002255 0.82 +0.8
479,609 + TX73_002255 0.83 +0.0
479,614 + TX73_002255 0.83 -2.7
479,614 + TX73_002255 0.83 +0.3
479,614 + TX73_002255 0.83 -0.0
479,614 + TX73_002255 0.83 +0.0
479,614 + TX73_002255 0.83 +0.5
479,617 - TX73_002255 0.83 +2.3
479,622 - TX73_002255 0.84 -0.7
479,622 - TX73_002255 0.84 +0.2
479,622 - TX73_002255 0.84 +0.2
479,622 - TX73_002255 0.84 +0.3
479,622 - TX73_002255 0.84 -0.2
479,622 - TX73_002255 0.84 +0.1
479,624 + TX73_002255 0.84 +0.3
479,629 + TX73_002255 0.84 +0.6
479,629 + TX73_002255 0.84 +0.2
479,629 + TX73_002255 0.84 -0.6
479,630 - TX73_002255 0.85 -0.1
479,632 - TX73_002255 0.85 +0.2
479,632 - TX73_002255 0.85 -0.4
479,636 + TX73_002255 0.85 -0.3
479,637 - TX73_002255 0.85 +0.6
479,637 - TX73_002255 0.85 +0.7
479,637 - TX73_002255 0.85 +0.0
479,658 + TX73_002255 0.87 +0.4
479,684 + TX73_002255 0.89 -0.3
479,712 + -0.1
479,712 + +2.1
479,712 + +0.8
479,712 + -0.8
479,720 - -0.1
479,720 - -0.2
479,720 - +0.3
479,746 + +0.5
479,752 - -0.3
479,766 - -0.8
479,783 - +0.3
479,786 - +0.0
479,796 - -0.8
479,797 + +0.3
479,797 + +0.2
479,797 + +0.3
479,797 + -0.7
479,797 + -0.6
479,805 - +0.6
479,805 - +0.2
479,805 - -0.2
479,805 - +0.2
479,813 + -0.6
479,829 + -1.5
479,834 + -0.1
479,837 - -0.0
479,839 + +0.6
479,855 - TX73_002260 0.14 -1.6
480,200 - +0.7
480,200 - -0.2
480,221 + +0.4
480,221 + -0.5
480,256 + +0.1
480,266 + +0.1
480,273 - -0.0
480,274 - +0.5
480,296 + -0.3
480,346 - -0.1
480,360 - +0.4
480,363 + -0.2
480,391 - +0.2
480,400 + +0.4
480,428 - +0.1

Or see this region's nucleotide sequence