Experiment: PM_argon75_N2O25 butyrate and Chloride 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_001380 and TX73_001385 are separated by 68 nucleotides TX73_001385 and TX73_001390 are separated by 205 nucleotides TX73_001390 and TX73_001395 are separated by 313 nucleotides
TX73_001380: TX73_001380 - alginate O-acetyltransferase, at 292,504 to 293,604
_001380
TX73_001385: TX73_001385 - MBOAT family protein, at 293,673 to 295,085
_001385
TX73_001390: TX73_001390 - tRNA-Gly, at 295,291 to 295,365
_001390
TX73_001395: TX73_001395 - thioredoxin, at 295,679 to 296,599
_001395
Position (kb) 293
294
295
296 Strain fitness (log2 ratio) -2
-1
0
1
2 at 292.702 kb on - strand, within TX73_001380 at 292.709 kb on + strand, within TX73_001380 at 292.716 kb on - strand, within TX73_001380 at 292.716 kb on - strand, within TX73_001380 at 292.740 kb on - strand, within TX73_001380 at 292.747 kb on + strand, within TX73_001380 at 292.757 kb on + strand, within TX73_001380 at 292.765 kb on - strand, within TX73_001380 at 292.770 kb on - strand, within TX73_001380 at 292.797 kb on - strand, within TX73_001380 at 292.799 kb on + strand, within TX73_001380 at 292.807 kb on - strand, within TX73_001380 at 292.871 kb on - strand, within TX73_001380 at 292.876 kb on + strand, within TX73_001380 at 292.902 kb on + strand, within TX73_001380 at 292.936 kb on + strand, within TX73_001380 at 292.945 kb on - strand, within TX73_001380 at 293.001 kb on + strand, within TX73_001380 at 293.087 kb on + strand, within TX73_001380 at 293.105 kb on - strand, within TX73_001380 at 293.110 kb on - strand, within TX73_001380 at 293.125 kb on - strand, within TX73_001380 at 293.126 kb on - strand, within TX73_001380 at 293.135 kb on + strand, within TX73_001380 at 293.138 kb on - strand, within TX73_001380 at 293.148 kb on - strand, within TX73_001380 at 293.148 kb on - strand, within TX73_001380 at 293.186 kb on + strand, within TX73_001380 at 293.194 kb on - strand, within TX73_001380 at 293.194 kb on - strand, within TX73_001380 at 293.196 kb on + strand, within TX73_001380 at 293.254 kb on - strand, within TX73_001380 at 293.281 kb on + strand, within TX73_001380 at 293.282 kb on + strand, within TX73_001380 at 293.282 kb on + strand, within TX73_001380 at 293.282 kb on + strand, within TX73_001380 at 293.290 kb on - strand, within TX73_001380 at 293.426 kb on + strand, within TX73_001380 at 293.426 kb on - strand, within TX73_001380 at 293.478 kb on + strand, within TX73_001380 at 293.530 kb on - strand at 293.541 kb on + strand at 293.541 kb on + strand at 293.541 kb on + strand at 293.561 kb on + strand at 293.569 kb on - strand at 293.591 kb on + strand at 293.596 kb on + strand at 293.599 kb on - strand at 293.739 kb on - strand at 293.782 kb on + strand at 293.785 kb on - strand at 293.813 kb on + strand at 293.822 kb on + strand, within TX73_001385 at 293.824 kb on + strand, within TX73_001385 at 293.830 kb on + strand, within TX73_001385 at 293.832 kb on - strand, within TX73_001385 at 293.835 kb on + strand, within TX73_001385 at 293.835 kb on + strand, within TX73_001385 at 293.843 kb on - strand, within TX73_001385 at 293.848 kb on - strand, within TX73_001385 at 293.848 kb on - strand, within TX73_001385 at 293.858 kb on - strand, within TX73_001385 at 293.860 kb on + strand, within TX73_001385 at 293.860 kb on + strand, within TX73_001385 at 293.863 kb on - strand, within TX73_001385 at 293.868 kb on - strand, within TX73_001385 at 293.868 kb on - strand, within TX73_001385 at 293.868 kb on - strand, within TX73_001385 at 293.878 kb on + strand, within TX73_001385 at 293.881 kb on + strand, within TX73_001385 at 293.904 kb on + strand, within TX73_001385 at 293.950 kb on - strand, within TX73_001385 at 293.971 kb on - strand, within TX73_001385 at 293.978 kb on + strand, within TX73_001385 at 294.001 kb on - strand, within TX73_001385 at 294.075 kb on + strand, within TX73_001385 at 294.125 kb on - strand, within TX73_001385 at 294.131 kb on + strand, within TX73_001385 at 294.203 kb on - strand, within TX73_001385 at 294.221 kb on - strand, within TX73_001385 at 294.223 kb on - strand, within TX73_001385 at 294.263 kb on + strand, within TX73_001385 at 294.343 kb on - strand, within TX73_001385 at 294.371 kb on - strand, within TX73_001385 at 294.379 kb on - strand, within TX73_001385 at 294.385 kb on + strand, within TX73_001385 at 294.385 kb on + strand, within TX73_001385 at 294.393 kb on - strand, within TX73_001385 at 294.411 kb on - strand, within TX73_001385 at 294.417 kb on + strand, within TX73_001385 at 294.440 kb on + strand, within TX73_001385 at 294.461 kb on + strand, within TX73_001385 at 294.477 kb on - strand, within TX73_001385 at 294.530 kb on + strand, within TX73_001385 at 294.530 kb on + strand, within TX73_001385 at 294.530 kb on + strand, within TX73_001385 at 294.545 kb on - strand, within TX73_001385 at 294.577 kb on - strand, within TX73_001385 at 294.639 kb on - strand, within TX73_001385 at 294.661 kb on - strand, within TX73_001385 at 294.700 kb on - strand, within TX73_001385 at 294.701 kb on - strand, within TX73_001385 at 294.730 kb on + strand, within TX73_001385 at 294.732 kb on + strand, within TX73_001385 at 294.748 kb on + strand, within TX73_001385 at 294.748 kb on + strand, within TX73_001385 at 294.748 kb on + strand, within TX73_001385 at 294.751 kb on + strand, within TX73_001385 at 294.756 kb on - strand, within TX73_001385 at 294.776 kb on + strand, within TX73_001385 at 294.784 kb on - strand, within TX73_001385 at 294.821 kb on + strand, within TX73_001385 at 294.824 kb on - strand, within TX73_001385 at 294.826 kb on + strand, within TX73_001385 at 294.831 kb on + strand, within TX73_001385 at 294.831 kb on + strand, within TX73_001385 at 294.831 kb on + strand, within TX73_001385 at 294.836 kb on + strand, within TX73_001385 at 294.839 kb on - strand, within TX73_001385 at 294.839 kb on - strand, within TX73_001385 at 294.844 kb on - strand, within TX73_001385 at 294.862 kb on + strand, within TX73_001385 at 294.865 kb on - strand, within TX73_001385 at 294.867 kb on + strand, within TX73_001385 at 294.875 kb on + strand, within TX73_001385 at 294.885 kb on + strand, within TX73_001385 at 294.920 kb on + strand, within TX73_001385 at 294.933 kb on - strand, within TX73_001385 at 294.938 kb on - strand, within TX73_001385 at 294.948 kb on - strand at 294.948 kb on - strand at 294.953 kb on - strand at 294.959 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.972 kb on - strand at 294.974 kb on + strand at 294.992 kb on - strand at 295.029 kb on + strand at 295.029 kb on + strand at 295.032 kb on - strand at 295.032 kb on - strand at 295.036 kb on + strand at 295.041 kb on + strand at 295.044 kb on - strand at 295.054 kb on - strand at 295.056 kb on + strand at 295.065 kb on - strand at 295.072 kb on + strand at 295.080 kb on + strand at 295.080 kb on - strand at 295.133 kb on + strand at 295.133 kb on + strand at 295.141 kb on - strand at 295.148 kb on + strand at 295.148 kb on + strand at 295.148 kb on + strand at 295.156 kb on - strand at 295.183 kb on + strand at 295.183 kb on + strand at 295.183 kb on + strand at 295.184 kb on + strand at 295.184 kb on + strand at 295.186 kb on + strand at 295.186 kb on + strand at 295.191 kb on - strand at 295.194 kb on - strand at 295.194 kb on - strand at 295.194 kb on - strand at 295.194 kb on - strand at 295.224 kb on - strand at 295.271 kb on + strand at 295.285 kb on + strand at 295.287 kb on + strand at 295.287 kb on + strand at 295.293 kb on - strand at 295.295 kb on - strand at 295.402 kb on - strand at 295.402 kb on - strand at 295.448 kb on - strand at 295.560 kb on - strand at 295.564 kb on - strand at 295.570 kb on + strand at 295.572 kb on + strand at 295.572 kb on + strand at 295.572 kb on + strand at 295.580 kb on - strand at 295.580 kb on - strand at 295.580 kb on - strand at 295.580 kb on - strand at 295.618 kb on + strand at 295.623 kb on + strand at 295.623 kb on + strand at 295.629 kb on + strand at 295.658 kb on + strand at 295.658 kb on + strand at 295.658 kb on + strand at 295.666 kb on - strand at 295.666 kb on - strand at 295.675 kb on - strand at 295.676 kb on - strand at 295.696 kb on + strand at 295.696 kb on + strand at 295.696 kb on + strand at 295.696 kb on + strand at 295.696 kb on + strand at 295.696 kb on + strand at 295.696 kb on + strand at 295.701 kb on + strand at 295.704 kb on - strand at 295.704 kb on - strand at 295.704 kb on - strand at 295.711 kb on + strand at 295.712 kb on + strand at 295.720 kb on - strand at 295.730 kb on - strand at 295.730 kb on - strand at 295.730 kb on - strand at 295.732 kb on + strand at 295.732 kb on + strand at 295.740 kb on - strand at 295.741 kb on + strand at 295.748 kb on + strand at 295.748 kb on + strand at 295.748 kb on + strand at 295.751 kb on - strand at 295.754 kb on + strand at 295.756 kb on - strand at 295.756 kb on - strand at 295.766 kb on - strand at 295.791 kb on + strand, within TX73_001395 at 295.796 kb on + strand, within TX73_001395 at 295.796 kb on + strand, within TX73_001395 at 295.799 kb on - strand, within TX73_001395 at 295.806 kb on + strand, within TX73_001395 at 295.807 kb on + strand, within TX73_001395 at 295.819 kb on + strand, within TX73_001395 at 295.819 kb on + strand, within TX73_001395 at 295.819 kb on + strand, within TX73_001395 at 295.819 kb on + strand, within TX73_001395 at 295.821 kb on + strand, within TX73_001395 at 295.821 kb on + strand, within TX73_001395 at 295.821 kb on + strand, within TX73_001395 at 295.825 kb on - strand, within TX73_001395 at 295.827 kb on - strand, within TX73_001395 at 295.827 kb on - strand, within TX73_001395 at 295.827 kb on - strand, within TX73_001395 at 295.827 kb on - strand, within TX73_001395 at 295.831 kb on + strand, within TX73_001395 at 295.838 kb on - strand, within TX73_001395 at 295.863 kb on - strand, within TX73_001395 at 295.879 kb on + strand, within TX73_001395 at 295.885 kb on + strand, within TX73_001395 at 295.893 kb on - strand, within TX73_001395 at 295.894 kb on + strand, within TX73_001395 at 295.894 kb on + strand, within TX73_001395 at 295.908 kb on - strand, within TX73_001395 at 295.944 kb on - strand, within TX73_001395 at 295.958 kb on + strand, within TX73_001395 at 295.988 kb on + strand, within TX73_001395 at 296.009 kb on + strand, within TX73_001395 at 296.017 kb on - strand, within TX73_001395 at 296.017 kb on - strand, within TX73_001395 at 296.017 kb on - strand, within TX73_001395 at 296.017 kb on - strand, within TX73_001395 at 296.024 kb on + strand, within TX73_001395 at 296.025 kb on - strand, within TX73_001395 at 296.032 kb on - strand, within TX73_001395 at 296.032 kb on - strand, within TX73_001395 at 296.037 kb on - strand, within TX73_001395 at 296.055 kb on - strand, within TX73_001395 at 296.057 kb on + strand, within TX73_001395
Per-strain Table
Position Strand Gene LocusTag Fraction PM_argon75_N2O25 butyrate and Chloride 0.1 mM remove 292,702 - TX73_001380 0.18 +0.0 292,709 + TX73_001380 0.19 +1.0 292,716 - TX73_001380 0.19 -0.3 292,716 - TX73_001380 0.19 -0.4 292,740 - TX73_001380 0.21 -0.1 292,747 + TX73_001380 0.22 -0.8 292,757 + TX73_001380 0.23 -0.2 292,765 - TX73_001380 0.24 +0.3 292,770 - TX73_001380 0.24 -0.3 292,797 - TX73_001380 0.27 +0.5 292,799 + TX73_001380 0.27 +1.8 292,807 - TX73_001380 0.28 +0.3 292,871 - TX73_001380 0.33 -0.2 292,876 + TX73_001380 0.34 -0.1 292,902 + TX73_001380 0.36 +0.5 292,936 + TX73_001380 0.39 -0.2 292,945 - TX73_001380 0.40 -0.2 293,001 + TX73_001380 0.45 -0.6 293,087 + TX73_001380 0.53 +0.1 293,105 - TX73_001380 0.55 -0.6 293,110 - TX73_001380 0.55 -0.1 293,125 - TX73_001380 0.56 -0.3 293,126 - TX73_001380 0.56 +2.2 293,135 + TX73_001380 0.57 -0.4 293,138 - TX73_001380 0.58 +0.4 293,148 - TX73_001380 0.58 +0.1 293,148 - TX73_001380 0.58 -1.0 293,186 + TX73_001380 0.62 +1.0 293,194 - TX73_001380 0.63 -0.1 293,194 - TX73_001380 0.63 +0.2 293,196 + TX73_001380 0.63 -0.4 293,254 - TX73_001380 0.68 -1.7 293,281 + TX73_001380 0.71 -0.5 293,282 + TX73_001380 0.71 -0.1 293,282 + TX73_001380 0.71 -0.4 293,282 + TX73_001380 0.71 -0.1 293,290 - TX73_001380 0.71 -0.2 293,426 + TX73_001380 0.84 -1.2 293,426 - TX73_001380 0.84 -0.4 293,478 + TX73_001380 0.88 -0.8 293,530 - +0.4 293,541 + -1.4 293,541 + +1.0 293,541 + +0.2 293,561 + +0.2 293,569 - -0.1 293,591 + +0.3 293,596 + -0.7 293,599 - +0.9 293,739 - +1.1 293,782 + +1.1 293,785 - -0.5 293,813 + -0.2 293,822 + TX73_001385 0.11 +0.6 293,824 + TX73_001385 0.11 -0.5 293,830 + TX73_001385 0.11 +0.2 293,832 - TX73_001385 0.11 +0.7 293,835 + TX73_001385 0.11 -0.2 293,835 + TX73_001385 0.11 -0.9 293,843 - TX73_001385 0.12 -0.3 293,848 - TX73_001385 0.12 -1.1 293,848 - TX73_001385 0.12 -0.8 293,858 - TX73_001385 0.13 -0.2 293,860 + TX73_001385 0.13 -0.3 293,860 + TX73_001385 0.13 -0.7 293,863 - TX73_001385 0.13 +0.6 293,868 - TX73_001385 0.14 +0.2 293,868 - TX73_001385 0.14 -0.8 293,868 - TX73_001385 0.14 -0.6 293,878 + TX73_001385 0.15 +0.6 293,881 + TX73_001385 0.15 +0.2 293,904 + TX73_001385 0.16 -0.5 293,950 - TX73_001385 0.20 +0.1 293,971 - TX73_001385 0.21 +0.4 293,978 + TX73_001385 0.22 -0.7 294,001 - TX73_001385 0.23 -0.4 294,075 + TX73_001385 0.28 +0.3 294,125 - TX73_001385 0.32 +0.4 294,131 + TX73_001385 0.32 +1.0 294,203 - TX73_001385 0.38 +0.2 294,221 - TX73_001385 0.39 -1.1 294,223 - TX73_001385 0.39 -0.6 294,263 + TX73_001385 0.42 +0.2 294,343 - TX73_001385 0.47 -0.8 294,371 - TX73_001385 0.49 -0.8 294,379 - TX73_001385 0.50 -0.2 294,385 + TX73_001385 0.50 +0.2 294,385 + TX73_001385 0.50 -0.4 294,393 - TX73_001385 0.51 -0.6 294,411 - TX73_001385 0.52 -0.1 294,417 + TX73_001385 0.53 +0.1 294,440 + TX73_001385 0.54 -0.5 294,461 + TX73_001385 0.56 -0.6 294,477 - TX73_001385 0.57 -0.6 294,530 + TX73_001385 0.61 +0.1 294,530 + TX73_001385 0.61 -0.9 294,530 + TX73_001385 0.61 +0.1 294,545 - TX73_001385 0.62 -0.9 294,577 - TX73_001385 0.64 -0.2 294,639 - TX73_001385 0.68 -0.8 294,661 - TX73_001385 0.70 -0.1 294,700 - TX73_001385 0.73 -0.9 294,701 - TX73_001385 0.73 +0.4 294,730 + TX73_001385 0.75 -0.4 294,732 + TX73_001385 0.75 +1.3 294,748 + TX73_001385 0.76 +0.6 294,748 + TX73_001385 0.76 +0.1 294,748 + TX73_001385 0.76 -0.8 294,751 + TX73_001385 0.76 -0.9 294,756 - TX73_001385 0.77 -0.2 294,776 + TX73_001385 0.78 -0.3 294,784 - TX73_001385 0.79 +0.3 294,821 + TX73_001385 0.81 -0.7 294,824 - TX73_001385 0.81 +0.3 294,826 + TX73_001385 0.82 +0.1 294,831 + TX73_001385 0.82 -0.7 294,831 + TX73_001385 0.82 +1.3 294,831 + TX73_001385 0.82 -1.1 294,836 + TX73_001385 0.82 -0.0 294,839 - TX73_001385 0.83 +0.0 294,839 - TX73_001385 0.83 -0.3 294,844 - TX73_001385 0.83 -0.7 294,862 + TX73_001385 0.84 -0.0 294,865 - TX73_001385 0.84 +0.6 294,867 + TX73_001385 0.85 -1.1 294,875 + TX73_001385 0.85 -0.4 294,885 + TX73_001385 0.86 +0.5 294,920 + TX73_001385 0.88 -0.6 294,933 - TX73_001385 0.89 -0.9 294,938 - TX73_001385 0.90 +0.8 294,948 - -0.8 294,948 - -0.5 294,953 - -0.1 294,959 + +0.1 294,964 + +0.2 294,964 + +0.2 294,964 + +0.1 294,964 + +0.1 294,964 + +0.4 294,972 - +0.1 294,974 + +0.1 294,992 - -1.8 295,029 + -1.7 295,029 + +0.3 295,032 - +0.2 295,032 - -0.6 295,036 + -0.5 295,041 + +0.1 295,044 - -0.4 295,054 - +0.1 295,056 + -0.5 295,065 - +0.7 295,072 + +0.3 295,080 + -0.6 295,080 - +0.0 295,133 + -0.7 295,133 + +0.3 295,141 - -0.1 295,148 + +0.6 295,148 + -0.9 295,148 + -1.1 295,156 - +0.7 295,183 + -0.1 295,183 + +0.6 295,183 + +0.3 295,184 + -0.1 295,184 + +0.9 295,186 + -1.2 295,186 + +1.1 295,191 - -0.3 295,194 - +0.4 295,194 - -0.5 295,194 - +0.5 295,194 - -1.7 295,224 - -1.0 295,271 + -0.4 295,285 + +0.4 295,287 + -1.1 295,287 + +0.0 295,293 - -0.5 295,295 - -0.3 295,402 - -0.7 295,402 - +0.9 295,448 - +0.4 295,560 - +0.1 295,564 - -1.0 295,570 + +0.0 295,572 + +0.2 295,572 + -1.0 295,572 + -0.2 295,580 - +0.4 295,580 - +1.0 295,580 - -0.5 295,580 - -1.5 295,618 + -0.2 295,623 + +1.1 295,623 + -0.4 295,629 + +0.4 295,658 + +0.5 295,658 + -0.0 295,658 + +0.3 295,666 - -0.3 295,666 - -0.7 295,675 - -1.2 295,676 - -0.3 295,696 + +0.7 295,696 + -0.2 295,696 + -1.1 295,696 + -0.9 295,696 + -0.5 295,696 + +0.6 295,696 + +0.9 295,701 + -1.0 295,704 - +0.5 295,704 - +0.1 295,704 - -0.6 295,711 + +0.1 295,712 + -0.3 295,720 - -1.3 295,730 - +0.4 295,730 - -0.3 295,730 - +0.5 295,732 + +1.8 295,732 + -0.2 295,740 - -1.2 295,741 + -0.2 295,748 + -0.1 295,748 + -0.5 295,748 + -0.3 295,751 - +0.8 295,754 + -0.0 295,756 - +0.4 295,756 - +0.5 295,766 - +0.1 295,791 + TX73_001395 0.12 -0.9 295,796 + TX73_001395 0.13 +0.7 295,796 + TX73_001395 0.13 -0.9 295,799 - TX73_001395 0.13 +1.3 295,806 + TX73_001395 0.14 +1.1 295,807 + TX73_001395 0.14 +0.6 295,819 + TX73_001395 0.15 -0.2 295,819 + TX73_001395 0.15 +0.1 295,819 + TX73_001395 0.15 -0.6 295,819 + TX73_001395 0.15 +0.2 295,821 + TX73_001395 0.15 +0.6 295,821 + TX73_001395 0.15 +0.2 295,821 + TX73_001395 0.15 +0.3 295,825 - TX73_001395 0.16 -1.1 295,827 - TX73_001395 0.16 +0.5 295,827 - TX73_001395 0.16 +0.3 295,827 - TX73_001395 0.16 +0.2 295,827 - TX73_001395 0.16 -1.6 295,831 + TX73_001395 0.17 -0.1 295,838 - TX73_001395 0.17 +0.2 295,863 - TX73_001395 0.20 -0.2 295,879 + TX73_001395 0.22 +0.2 295,885 + TX73_001395 0.22 -0.1 295,893 - TX73_001395 0.23 +0.8 295,894 + TX73_001395 0.23 -0.4 295,894 + TX73_001395 0.23 +0.3 295,908 - TX73_001395 0.25 -0.9 295,944 - TX73_001395 0.29 +0.1 295,958 + TX73_001395 0.30 +0.2 295,988 + TX73_001395 0.34 -0.6 296,009 + TX73_001395 0.36 +0.2 296,017 - TX73_001395 0.37 -0.7 296,017 - TX73_001395 0.37 -0.8 296,017 - TX73_001395 0.37 +0.4 296,017 - TX73_001395 0.37 +0.3 296,024 + TX73_001395 0.37 -1.2 296,025 - TX73_001395 0.38 +0.2 296,032 - TX73_001395 0.38 -1.0 296,032 - TX73_001395 0.38 -0.3 296,037 - TX73_001395 0.39 -0.1 296,055 - TX73_001395 0.41 -0.4 296,057 + TX73_001395 0.41 -0.9
Or see this region's nucleotide sequence