Experiment: PM_argon75_N2O25 butyrate and Chloride 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_004150 and TX73_004155 are separated by 394 nucleotides TX73_004155 and TX73_004160 are separated by 175 nucleotides
TX73_004150: TX73_004150 - outer membrane beta-barrel protein, at 892,684 to 894,033
_004150
TX73_004155: TX73_004155 - ABC transporter substrate-binding protein, at 894,428 to 895,597
_004155
TX73_004160: TX73_004160 - ligase-associated DNA damage response DEXH box helicase, at 895,773 to 898,490
_004160
Position (kb) 894
895
896 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 893.476 kb on + strand, within TX73_004150 at 893.534 kb on + strand, within TX73_004150 at 893.562 kb on - strand, within TX73_004150 at 893.562 kb on - strand, within TX73_004150 at 893.582 kb on - strand, within TX73_004150 at 893.593 kb on + strand, within TX73_004150 at 893.608 kb on + strand, within TX73_004150 at 893.615 kb on + strand, within TX73_004150 at 893.615 kb on + strand, within TX73_004150 at 893.619 kb on - strand, within TX73_004150 at 893.644 kb on - strand, within TX73_004150 at 893.652 kb on + strand, within TX73_004150 at 893.652 kb on - strand, within TX73_004150 at 893.688 kb on + strand, within TX73_004150 at 893.688 kb on + strand, within TX73_004150 at 893.688 kb on + strand, within TX73_004150 at 893.688 kb on + strand, within TX73_004150 at 893.690 kb on + strand, within TX73_004150 at 893.690 kb on + strand, within TX73_004150 at 893.696 kb on - strand, within TX73_004150 at 893.696 kb on - strand, within TX73_004150 at 893.696 kb on - strand, within TX73_004150 at 893.698 kb on - strand, within TX73_004150 at 893.698 kb on - strand, within TX73_004150 at 893.698 kb on - strand, within TX73_004150 at 893.698 kb on - strand, within TX73_004150 at 893.698 kb on - strand, within TX73_004150 at 893.713 kb on + strand, within TX73_004150 at 893.713 kb on + strand, within TX73_004150 at 893.721 kb on - strand, within TX73_004150 at 893.727 kb on + strand, within TX73_004150 at 893.750 kb on - strand, within TX73_004150 at 893.750 kb on - strand, within TX73_004150 at 893.767 kb on - strand, within TX73_004150 at 893.773 kb on + strand, within TX73_004150 at 893.773 kb on + strand, within TX73_004150 at 893.781 kb on - strand, within TX73_004150 at 893.800 kb on - strand, within TX73_004150 at 893.817 kb on + strand, within TX73_004150 at 893.817 kb on + strand, within TX73_004150 at 893.842 kb on + strand, within TX73_004150 at 893.846 kb on + strand, within TX73_004150 at 893.847 kb on + strand, within TX73_004150 at 893.865 kb on + strand, within TX73_004150 at 893.865 kb on + strand, within TX73_004150 at 893.866 kb on + strand, within TX73_004150 at 893.870 kb on - strand, within TX73_004150 at 893.873 kb on - strand, within TX73_004150 at 893.873 kb on - strand, within TX73_004150 at 893.885 kb on - strand, within TX73_004150 at 893.885 kb on - strand, within TX73_004150 at 893.897 kb on - strand, within TX73_004150 at 893.915 kb on + strand at 893.917 kb on + strand at 893.917 kb on + strand at 893.917 kb on + strand at 893.925 kb on - strand at 893.925 kb on - strand at 893.946 kb on + strand at 893.954 kb on + strand at 893.954 kb on + strand at 893.954 kb on - strand at 893.986 kb on + strand at 893.999 kb on - strand at 894.001 kb on + strand at 894.009 kb on - strand at 894.045 kb on - strand at 894.048 kb on + strand at 894.056 kb on - strand at 894.056 kb on - strand at 894.056 kb on - strand at 894.063 kb on + strand at 894.064 kb on + strand at 894.065 kb on + strand at 894.065 kb on + strand at 894.078 kb on + strand at 894.088 kb on + strand at 894.092 kb on + strand at 894.100 kb on - strand at 894.100 kb on - strand at 894.120 kb on - strand at 894.194 kb on + strand at 894.234 kb on - strand at 894.279 kb on + strand at 894.287 kb on - strand at 894.289 kb on + strand at 894.292 kb on - strand at 894.308 kb on + strand at 894.308 kb on - strand at 894.323 kb on + strand at 894.327 kb on + strand at 894.327 kb on + strand at 894.363 kb on - strand at 894.388 kb on + strand at 894.388 kb on + strand at 894.396 kb on - strand at 894.396 kb on - strand at 894.396 kb on - strand at 894.438 kb on - strand at 894.438 kb on - strand at 894.438 kb on - strand at 894.514 kb on - strand at 894.536 kb on + strand at 894.536 kb on - strand at 894.538 kb on + strand at 894.538 kb on + strand at 894.546 kb on - strand, within TX73_004155 at 894.546 kb on - strand, within TX73_004155 at 894.546 kb on - strand, within TX73_004155 at 894.556 kb on - strand, within TX73_004155 at 894.556 kb on - strand, within TX73_004155 at 894.630 kb on + strand, within TX73_004155 at 894.638 kb on + strand, within TX73_004155 at 894.640 kb on + strand, within TX73_004155 at 894.640 kb on + strand, within TX73_004155 at 894.640 kb on + strand, within TX73_004155 at 894.640 kb on + strand, within TX73_004155 at 894.640 kb on + strand, within TX73_004155 at 894.640 kb on + strand, within TX73_004155 at 894.640 kb on + strand, within TX73_004155 at 894.640 kb on + strand, within TX73_004155 at 894.640 kb on + strand, within TX73_004155 at 894.640 kb on + strand, within TX73_004155 at 894.640 kb on + strand, within TX73_004155 at 894.640 kb on + strand, within TX73_004155 at 894.648 kb on - strand, within TX73_004155 at 894.648 kb on - strand, within TX73_004155 at 894.648 kb on - strand, within TX73_004155 at 894.648 kb on - strand, within TX73_004155 at 894.648 kb on - strand, within TX73_004155 at 894.666 kb on - strand, within TX73_004155 at 894.687 kb on + strand, within TX73_004155 at 894.689 kb on + strand, within TX73_004155 at 894.689 kb on + strand, within TX73_004155 at 894.691 kb on + strand, within TX73_004155 at 894.692 kb on + strand, within TX73_004155 at 894.698 kb on + strand, within TX73_004155 at 894.699 kb on + strand, within TX73_004155 at 894.707 kb on - strand, within TX73_004155 at 894.709 kb on + strand, within TX73_004155 at 894.709 kb on + strand, within TX73_004155 at 894.717 kb on - strand, within TX73_004155 at 894.717 kb on - strand, within TX73_004155 at 894.739 kb on - strand, within TX73_004155 at 894.784 kb on + strand, within TX73_004155 at 894.789 kb on + strand, within TX73_004155 at 894.803 kb on + strand, within TX73_004155 at 894.821 kb on - strand, within TX73_004155 at 894.831 kb on - strand, within TX73_004155 at 894.853 kb on + strand, within TX73_004155 at 894.861 kb on - strand, within TX73_004155 at 894.861 kb on - strand, within TX73_004155 at 894.861 kb on - strand, within TX73_004155 at 894.868 kb on - strand, within TX73_004155 at 894.874 kb on - strand, within TX73_004155 at 894.896 kb on + strand, within TX73_004155 at 894.922 kb on + strand, within TX73_004155 at 894.957 kb on - strand, within TX73_004155 at 894.964 kb on + strand, within TX73_004155 at 894.964 kb on + strand, within TX73_004155 at 894.964 kb on + strand, within TX73_004155 at 894.964 kb on + strand, within TX73_004155 at 894.972 kb on - strand, within TX73_004155 at 894.972 kb on - strand, within TX73_004155 at 894.997 kb on + strand, within TX73_004155 at 894.997 kb on + strand, within TX73_004155 at 894.997 kb on + strand, within TX73_004155 at 894.998 kb on + strand, within TX73_004155 at 895.005 kb on - strand, within TX73_004155 at 895.005 kb on - strand, within TX73_004155 at 895.005 kb on - strand, within TX73_004155 at 895.005 kb on - strand, within TX73_004155 at 895.005 kb on - strand, within TX73_004155 at 895.006 kb on - strand, within TX73_004155 at 895.056 kb on + strand, within TX73_004155 at 895.063 kb on - strand, within TX73_004155 at 895.074 kb on - strand, within TX73_004155 at 895.127 kb on + strand, within TX73_004155 at 895.156 kb on - strand, within TX73_004155 at 895.181 kb on - strand, within TX73_004155 at 895.181 kb on - strand, within TX73_004155 at 895.199 kb on - strand, within TX73_004155 at 895.204 kb on - strand, within TX73_004155 at 895.212 kb on + strand, within TX73_004155 at 895.222 kb on + strand, within TX73_004155 at 895.230 kb on - strand, within TX73_004155 at 895.266 kb on - strand, within TX73_004155 at 895.284 kb on + strand, within TX73_004155 at 895.299 kb on - strand, within TX73_004155 at 895.342 kb on + strand, within TX73_004155 at 895.349 kb on + strand, within TX73_004155 at 895.350 kb on - strand, within TX73_004155 at 895.362 kb on - strand, within TX73_004155 at 895.364 kb on + strand, within TX73_004155 at 895.372 kb on - strand, within TX73_004155 at 895.452 kb on + strand, within TX73_004155 at 895.501 kb on - strand at 895.506 kb on - strand at 895.513 kb on + strand at 895.521 kb on - strand at 895.523 kb on - strand at 895.537 kb on + strand at 895.556 kb on - strand at 895.600 kb on - strand at 895.605 kb on - strand at 895.624 kb on + strand at 895.625 kb on - strand at 895.684 kb on - strand at 895.769 kb on - strand at 895.771 kb on + strand at 895.775 kb on - strand at 895.792 kb on + strand at 895.795 kb on - strand at 895.840 kb on + strand at 895.840 kb on + strand at 895.899 kb on + strand at 895.916 kb on + strand at 895.926 kb on + strand at 895.927 kb on + strand at 895.972 kb on + strand at 895.980 kb on - strand at 895.991 kb on + strand at 896.016 kb on - strand at 896.039 kb on - strand at 896.056 kb on - strand, within TX73_004160 at 896.124 kb on + strand, within TX73_004160 at 896.124 kb on + strand, within TX73_004160 at 896.124 kb on + strand, within TX73_004160 at 896.132 kb on - strand, within TX73_004160 at 896.132 kb on - strand, within TX73_004160 at 896.132 kb on - strand, within TX73_004160 at 896.181 kb on + strand, within TX73_004160 at 896.181 kb on + strand, within TX73_004160 at 896.189 kb on - strand, within TX73_004160 at 896.195 kb on + strand, within TX73_004160 at 896.203 kb on - strand, within TX73_004160 at 896.218 kb on - strand, within TX73_004160 at 896.305 kb on + strand, within TX73_004160 at 896.305 kb on + strand, within TX73_004160 at 896.313 kb on - strand, within TX73_004160 at 896.336 kb on + strand, within TX73_004160 at 896.337 kb on + strand, within TX73_004160 at 896.347 kb on + strand, within TX73_004160 at 896.347 kb on + strand, within TX73_004160 at 896.355 kb on - strand, within TX73_004160 at 896.391 kb on + strand, within TX73_004160 at 896.396 kb on + strand, within TX73_004160 at 896.427 kb on + strand, within TX73_004160 at 896.427 kb on + strand, within TX73_004160 at 896.473 kb on - strand, within TX73_004160 at 896.507 kb on + strand, within TX73_004160 at 896.510 kb on - strand, within TX73_004160
Per-strain Table
Position Strand Gene LocusTag Fraction PM_argon75_N2O25 butyrate and Chloride 0.1 mM remove 893,476 + TX73_004150 0.59 +0.2 893,534 + TX73_004150 0.63 -0.3 893,562 - TX73_004150 0.65 +0.2 893,562 - TX73_004150 0.65 +0.9 893,582 - TX73_004150 0.67 +0.4 893,593 + TX73_004150 0.67 +0.1 893,608 + TX73_004150 0.68 +0.3 893,615 + TX73_004150 0.69 -0.4 893,615 + TX73_004150 0.69 +1.6 893,619 - TX73_004150 0.69 +0.0 893,644 - TX73_004150 0.71 -0.3 893,652 + TX73_004150 0.72 +0.6 893,652 - TX73_004150 0.72 +1.5 893,688 + TX73_004150 0.74 +0.6 893,688 + TX73_004150 0.74 -0.1 893,688 + TX73_004150 0.74 +0.1 893,688 + TX73_004150 0.74 +1.3 893,690 + TX73_004150 0.75 -0.7 893,690 + TX73_004150 0.75 +1.2 893,696 - TX73_004150 0.75 +1.0 893,696 - TX73_004150 0.75 -0.9 893,696 - TX73_004150 0.75 -1.4 893,698 - TX73_004150 0.75 +0.9 893,698 - TX73_004150 0.75 +0.2 893,698 - TX73_004150 0.75 -0.5 893,698 - TX73_004150 0.75 -1.3 893,698 - TX73_004150 0.75 -0.5 893,713 + TX73_004150 0.76 +0.7 893,713 + TX73_004150 0.76 -0.1 893,721 - TX73_004150 0.77 +0.2 893,727 + TX73_004150 0.77 +0.6 893,750 - TX73_004150 0.79 -0.1 893,750 - TX73_004150 0.79 +1.2 893,767 - TX73_004150 0.80 +0.4 893,773 + TX73_004150 0.81 +0.7 893,773 + TX73_004150 0.81 -0.9 893,781 - TX73_004150 0.81 +0.6 893,800 - TX73_004150 0.83 +0.9 893,817 + TX73_004150 0.84 -1.5 893,817 + TX73_004150 0.84 -0.0 893,842 + TX73_004150 0.86 +0.7 893,846 + TX73_004150 0.86 -0.0 893,847 + TX73_004150 0.86 -0.0 893,865 + TX73_004150 0.87 +1.2 893,865 + TX73_004150 0.87 +0.4 893,866 + TX73_004150 0.88 +1.1 893,870 - TX73_004150 0.88 +0.5 893,873 - TX73_004150 0.88 +0.5 893,873 - TX73_004150 0.88 +0.1 893,885 - TX73_004150 0.89 +0.1 893,885 - TX73_004150 0.89 +0.4 893,897 - TX73_004150 0.90 +2.9 893,915 + -0.4 893,917 + +0.4 893,917 + +0.1 893,917 + -0.4 893,925 - +0.6 893,925 - +0.1 893,946 + +0.7 893,954 + +1.6 893,954 + +0.1 893,954 - +1.4 893,986 + -0.9 893,999 - +0.0 894,001 + +0.4 894,009 - -2.4 894,045 - +0.6 894,048 + -0.6 894,056 - -0.3 894,056 - +0.1 894,056 - +0.6 894,063 + +1.2 894,064 + -0.1 894,065 + +0.7 894,065 + +0.3 894,078 + -0.9 894,088 + -0.5 894,092 + -0.7 894,100 - -0.0 894,100 - +0.4 894,120 - -0.0 894,194 + +0.9 894,234 - -0.2 894,279 + +0.4 894,287 - +0.0 894,289 + +0.4 894,292 - -0.4 894,308 + +0.2 894,308 - -1.1 894,323 + +1.0 894,327 + -0.0 894,327 + -0.7 894,363 - -0.2 894,388 + -0.4 894,388 + +0.5 894,396 - +0.9 894,396 - +0.5 894,396 - -0.9 894,438 - +0.3 894,438 - +0.8 894,438 - -0.0 894,514 - -1.0 894,536 + +0.5 894,536 - +0.1 894,538 + +0.2 894,538 + -0.4 894,546 - TX73_004155 0.10 +0.7 894,546 - TX73_004155 0.10 -0.3 894,546 - TX73_004155 0.10 -0.1 894,556 - TX73_004155 0.11 +0.1 894,556 - TX73_004155 0.11 -0.2 894,630 + TX73_004155 0.17 +0.2 894,638 + TX73_004155 0.18 +0.3 894,640 + TX73_004155 0.18 +0.0 894,640 + TX73_004155 0.18 -0.3 894,640 + TX73_004155 0.18 +0.2 894,640 + TX73_004155 0.18 +0.0 894,640 + TX73_004155 0.18 +0.2 894,640 + TX73_004155 0.18 +0.7 894,640 + TX73_004155 0.18 +0.2 894,640 + TX73_004155 0.18 +0.4 894,640 + TX73_004155 0.18 -0.3 894,640 + TX73_004155 0.18 -0.1 894,640 + TX73_004155 0.18 +0.4 894,640 + TX73_004155 0.18 -0.1 894,648 - TX73_004155 0.19 -0.7 894,648 - TX73_004155 0.19 -1.1 894,648 - TX73_004155 0.19 +1.2 894,648 - TX73_004155 0.19 -0.1 894,648 - TX73_004155 0.19 +0.4 894,666 - TX73_004155 0.20 -0.9 894,687 + TX73_004155 0.22 -0.5 894,689 + TX73_004155 0.22 +1.2 894,689 + TX73_004155 0.22 +0.4 894,691 + TX73_004155 0.22 +0.2 894,692 + TX73_004155 0.23 +1.6 894,698 + TX73_004155 0.23 +0.5 894,699 + TX73_004155 0.23 +0.4 894,707 - TX73_004155 0.24 +0.1 894,709 + TX73_004155 0.24 -0.7 894,709 + TX73_004155 0.24 +0.4 894,717 - TX73_004155 0.25 +0.9 894,717 - TX73_004155 0.25 -0.4 894,739 - TX73_004155 0.27 +1.4 894,784 + TX73_004155 0.30 +0.5 894,789 + TX73_004155 0.31 +0.4 894,803 + TX73_004155 0.32 -0.3 894,821 - TX73_004155 0.34 +0.5 894,831 - TX73_004155 0.34 -0.4 894,853 + TX73_004155 0.36 +0.0 894,861 - TX73_004155 0.37 -1.2 894,861 - TX73_004155 0.37 +0.4 894,861 - TX73_004155 0.37 +0.2 894,868 - TX73_004155 0.38 +0.8 894,874 - TX73_004155 0.38 +0.2 894,896 + TX73_004155 0.40 -0.5 894,922 + TX73_004155 0.42 +0.2 894,957 - TX73_004155 0.45 -0.4 894,964 + TX73_004155 0.46 -0.2 894,964 + TX73_004155 0.46 +0.2 894,964 + TX73_004155 0.46 +0.1 894,964 + TX73_004155 0.46 +0.0 894,972 - TX73_004155 0.46 +0.6 894,972 - TX73_004155 0.46 +0.3 894,997 + TX73_004155 0.49 +0.2 894,997 + TX73_004155 0.49 +1.4 894,997 + TX73_004155 0.49 +0.5 894,998 + TX73_004155 0.49 -1.0 895,005 - TX73_004155 0.49 +0.6 895,005 - TX73_004155 0.49 -1.7 895,005 - TX73_004155 0.49 +0.2 895,005 - TX73_004155 0.49 +0.2 895,005 - TX73_004155 0.49 +1.1 895,006 - TX73_004155 0.49 -0.6 895,056 + TX73_004155 0.54 -0.8 895,063 - TX73_004155 0.54 -0.1 895,074 - TX73_004155 0.55 +0.7 895,127 + TX73_004155 0.60 +0.6 895,156 - TX73_004155 0.62 -0.2 895,181 - TX73_004155 0.64 +0.1 895,181 - TX73_004155 0.64 -0.6 895,199 - TX73_004155 0.66 +0.5 895,204 - TX73_004155 0.66 +0.1 895,212 + TX73_004155 0.67 +0.3 895,222 + TX73_004155 0.68 +0.8 895,230 - TX73_004155 0.69 +0.7 895,266 - TX73_004155 0.72 -0.2 895,284 + TX73_004155 0.73 -0.0 895,299 - TX73_004155 0.74 -0.3 895,342 + TX73_004155 0.78 +0.1 895,349 + TX73_004155 0.79 +0.2 895,350 - TX73_004155 0.79 +0.5 895,362 - TX73_004155 0.80 +0.2 895,364 + TX73_004155 0.80 -0.2 895,372 - TX73_004155 0.81 +0.1 895,452 + TX73_004155 0.88 -0.0 895,501 - +0.6 895,506 - -0.5 895,513 + +0.3 895,521 - +0.8 895,523 - -0.3 895,537 + -0.4 895,556 - +1.4 895,600 - +0.3 895,605 - -0.1 895,624 + -0.9 895,625 - +0.2 895,684 - +1.3 895,769 - +1.0 895,771 + +0.5 895,775 - -0.6 895,792 + -0.9 895,795 - -0.9 895,840 + +0.1 895,840 + -0.2 895,899 + -0.6 895,916 + +0.2 895,926 + -0.0 895,927 + +0.0 895,972 + -0.1 895,980 - -0.2 895,991 + +0.9 896,016 - -0.3 896,039 - -0.3 896,056 - TX73_004160 0.10 -2.1 896,124 + TX73_004160 0.13 -0.1 896,124 + TX73_004160 0.13 -0.1 896,124 + TX73_004160 0.13 -0.1 896,132 - TX73_004160 0.13 -0.0 896,132 - TX73_004160 0.13 +0.7 896,132 - TX73_004160 0.13 +0.8 896,181 + TX73_004160 0.15 +1.8 896,181 + TX73_004160 0.15 -0.8 896,189 - TX73_004160 0.15 -0.3 896,195 + TX73_004160 0.16 +0.9 896,203 - TX73_004160 0.16 +0.4 896,218 - TX73_004160 0.16 +0.2 896,305 + TX73_004160 0.20 -0.8 896,305 + TX73_004160 0.20 -0.6 896,313 - TX73_004160 0.20 -0.1 896,336 + TX73_004160 0.21 +0.9 896,337 + TX73_004160 0.21 +0.7 896,347 + TX73_004160 0.21 -0.4 896,347 + TX73_004160 0.21 +1.8 896,355 - TX73_004160 0.21 -0.1 896,391 + TX73_004160 0.23 +0.1 896,396 + TX73_004160 0.23 +0.4 896,427 + TX73_004160 0.24 +0.2 896,427 + TX73_004160 0.24 -0.8 896,473 - TX73_004160 0.26 -0.5 896,507 + TX73_004160 0.27 -0.8 896,510 - TX73_004160 0.27 +0.5
Or see this region's nucleotide sequence