Experiment: PM_argon75_N2O25 butyrate and Chloride 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_003185 and TX73_003190 are separated by 21 nucleotides TX73_003190 and TX73_003195 are separated by 95 nucleotides TX73_003195 and TX73_003200 are separated by 19 nucleotides
TX73_003185: TX73_003185 - DNA polymerase III subunit gamma/tau, at 682,650 to 684,521
_003185
TX73_003190: TX73_003190 - YbaB/EbfC family nucleoid-associated protein, at 684,543 to 684,863
_003190
TX73_003195: TX73_003195 - recombination mediator RecR, at 684,959 to 685,561
_003195
TX73_003200: TX73_003200 - hypothetical protein, at 685,581 to 686,009
_003200
Position (kb) 684
685 Strain fitness (log2 ratio) -2
-1
0
1
2 at 684.439 kb on + strand at 684.441 kb on + strand at 684.449 kb on - strand at 684.454 kb on + strand at 684.454 kb on + strand at 684.462 kb on - strand at 684.462 kb on - strand at 684.480 kb on + strand at 684.483 kb on - strand at 684.488 kb on - strand at 684.488 kb on - strand at 684.493 kb on + strand at 684.566 kb on + strand at 684.567 kb on + strand at 684.584 kb on - strand, within TX73_003190 at 684.593 kb on + strand, within TX73_003190 at 684.593 kb on + strand, within TX73_003190 at 684.595 kb on - strand, within TX73_003190 at 684.598 kb on + strand, within TX73_003190 at 684.598 kb on + strand, within TX73_003190 at 684.601 kb on - strand, within TX73_003190 at 684.606 kb on - strand, within TX73_003190 at 684.608 kb on + strand, within TX73_003190 at 684.613 kb on + strand, within TX73_003190 at 684.623 kb on + strand, within TX73_003190 at 684.623 kb on + strand, within TX73_003190 at 684.627 kb on - strand, within TX73_003190 at 684.631 kb on - strand, within TX73_003190 at 684.631 kb on - strand, within TX73_003190 at 684.646 kb on + strand, within TX73_003190 at 684.663 kb on + strand, within TX73_003190 at 684.663 kb on + strand, within TX73_003190 at 684.663 kb on + strand, within TX73_003190 at 684.669 kb on - strand, within TX73_003190 at 684.671 kb on - strand, within TX73_003190 at 684.679 kb on + strand, within TX73_003190 at 684.679 kb on + strand, within TX73_003190 at 684.687 kb on - strand, within TX73_003190 at 684.687 kb on - strand, within TX73_003190 at 684.703 kb on - strand, within TX73_003190 at 684.716 kb on + strand, within TX73_003190 at 684.721 kb on + strand, within TX73_003190 at 684.724 kb on - strand, within TX73_003190 at 684.729 kb on - strand, within TX73_003190 at 684.731 kb on + strand, within TX73_003190 at 684.731 kb on - strand, within TX73_003190 at 684.747 kb on + strand, within TX73_003190 at 684.777 kb on - strand, within TX73_003190 at 684.793 kb on - strand, within TX73_003190 at 684.793 kb on - strand, within TX73_003190 at 684.798 kb on + strand, within TX73_003190 at 684.816 kb on + strand, within TX73_003190 at 684.818 kb on - strand, within TX73_003190 at 684.829 kb on + strand, within TX73_003190 at 684.829 kb on + strand, within TX73_003190 at 684.847 kb on + strand at 684.855 kb on - strand at 684.858 kb on + strand at 684.860 kb on - strand at 684.861 kb on - strand at 684.861 kb on - strand at 684.863 kb on + strand at 684.865 kb on - strand at 684.865 kb on - strand at 684.865 kb on - strand at 684.885 kb on + strand at 684.893 kb on - strand at 684.893 kb on - strand at 684.918 kb on - strand at 684.923 kb on + strand at 684.934 kb on + strand at 684.934 kb on + strand at 684.947 kb on - strand at 684.947 kb on - strand at 684.952 kb on - strand at 684.955 kb on + strand at 684.955 kb on + strand at 685.054 kb on + strand, within TX73_003195 at 685.095 kb on + strand, within TX73_003195 at 685.132 kb on + strand, within TX73_003195 at 685.209 kb on + strand, within TX73_003195 at 685.370 kb on - strand, within TX73_003195 at 685.417 kb on - strand, within TX73_003195 at 685.422 kb on + strand, within TX73_003195 at 685.555 kb on + strand at 685.555 kb on + strand at 685.555 kb on + strand at 685.555 kb on + strand at 685.555 kb on + strand at 685.555 kb on + strand at 685.563 kb on - strand at 685.563 kb on - strand at 685.563 kb on - strand at 685.568 kb on - strand at 685.569 kb on + strand at 685.601 kb on - strand at 685.639 kb on + strand, within TX73_003200 at 685.647 kb on - strand, within TX73_003200 at 685.647 kb on - strand, within TX73_003200 at 685.655 kb on - strand, within TX73_003200 at 685.678 kb on - strand, within TX73_003200 at 685.691 kb on + strand, within TX73_003200 at 685.701 kb on + strand, within TX73_003200 at 685.765 kb on - strand, within TX73_003200 at 685.772 kb on + strand, within TX73_003200 at 685.779 kb on + strand, within TX73_003200 at 685.780 kb on - strand, within TX73_003200 at 685.819 kb on + strand, within TX73_003200 at 685.829 kb on + strand, within TX73_003200 at 685.836 kb on + strand, within TX73_003200 at 685.837 kb on - strand, within TX73_003200 at 685.843 kb on - strand, within TX73_003200
Per-strain Table
Position Strand Gene LocusTag Fraction PM_argon75_N2O25 butyrate and Chloride 0.1 mM remove 684,439 + -0.0 684,441 + +1.1 684,449 - -0.6 684,454 + +0.1 684,454 + +0.1 684,462 - -0.4 684,462 - -0.1 684,480 + -0.4 684,483 - -0.5 684,488 - -0.3 684,488 - -0.6 684,493 + -0.8 684,566 + +0.6 684,567 + -0.5 684,584 - TX73_003190 0.13 +0.1 684,593 + TX73_003190 0.16 -0.2 684,593 + TX73_003190 0.16 +0.1 684,595 - TX73_003190 0.16 -0.1 684,598 + TX73_003190 0.17 +0.4 684,598 + TX73_003190 0.17 -1.1 684,601 - TX73_003190 0.18 -0.1 684,606 - TX73_003190 0.20 +0.1 684,608 + TX73_003190 0.20 +0.9 684,613 + TX73_003190 0.22 -0.3 684,623 + TX73_003190 0.25 -0.3 684,623 + TX73_003190 0.25 -0.1 684,627 - TX73_003190 0.26 +0.4 684,631 - TX73_003190 0.27 +0.4 684,631 - TX73_003190 0.27 -0.9 684,646 + TX73_003190 0.32 +0.2 684,663 + TX73_003190 0.37 +0.6 684,663 + TX73_003190 0.37 -1.2 684,663 + TX73_003190 0.37 +1.1 684,669 - TX73_003190 0.39 -0.4 684,671 - TX73_003190 0.40 -0.4 684,679 + TX73_003190 0.42 -0.9 684,679 + TX73_003190 0.42 -0.4 684,687 - TX73_003190 0.45 +0.5 684,687 - TX73_003190 0.45 +0.1 684,703 - TX73_003190 0.50 +0.2 684,716 + TX73_003190 0.54 +0.1 684,721 + TX73_003190 0.55 -1.2 684,724 - TX73_003190 0.56 +0.0 684,729 - TX73_003190 0.58 +0.1 684,731 + TX73_003190 0.59 +1.1 684,731 - TX73_003190 0.59 -0.8 684,747 + TX73_003190 0.64 -0.3 684,777 - TX73_003190 0.73 -0.3 684,793 - TX73_003190 0.78 -0.4 684,793 - TX73_003190 0.78 -1.5 684,798 + TX73_003190 0.79 -0.9 684,816 + TX73_003190 0.85 +0.1 684,818 - TX73_003190 0.86 -1.1 684,829 + TX73_003190 0.89 -0.8 684,829 + TX73_003190 0.89 -0.1 684,847 + -0.2 684,855 - -0.2 684,858 + -0.3 684,860 - -0.2 684,861 - +0.8 684,861 - +0.9 684,863 + -0.4 684,865 - -0.5 684,865 - +0.1 684,865 - -0.7 684,885 + -0.0 684,893 - -0.5 684,893 - +0.8 684,918 - +0.2 684,923 + +0.2 684,934 + -0.2 684,934 + -0.6 684,947 - +0.8 684,947 - -0.0 684,952 - +0.9 684,955 + -0.1 684,955 + -0.2 685,054 + TX73_003195 0.16 +0.2 685,095 + TX73_003195 0.23 -0.1 685,132 + TX73_003195 0.29 -0.2 685,209 + TX73_003195 0.41 +1.8 685,370 - TX73_003195 0.68 -1.5 685,417 - TX73_003195 0.76 -0.8 685,422 + TX73_003195 0.77 +1.2 685,555 + +0.0 685,555 + +0.4 685,555 + -0.8 685,555 + +1.0 685,555 + +1.4 685,555 + -1.2 685,563 - -1.8 685,563 - -1.0 685,563 - -0.8 685,568 - -0.1 685,569 + -0.1 685,601 - -0.5 685,639 + TX73_003200 0.14 +0.3 685,647 - TX73_003200 0.15 -1.1 685,647 - TX73_003200 0.15 -0.8 685,655 - TX73_003200 0.17 +0.5 685,678 - TX73_003200 0.23 +1.1 685,691 + TX73_003200 0.26 -0.7 685,701 + TX73_003200 0.28 +1.6 685,765 - TX73_003200 0.43 +0.8 685,772 + TX73_003200 0.45 +0.6 685,779 + TX73_003200 0.46 -0.6 685,780 - TX73_003200 0.46 +0.5 685,819 + TX73_003200 0.55 -0.4 685,829 + TX73_003200 0.58 -0.7 685,836 + TX73_003200 0.59 +0.3 685,837 - TX73_003200 0.60 -0.1 685,843 - TX73_003200 0.61 +0.6
Or see this region's nucleotide sequence