Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_018065

Experiment: PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM
3,937,058	+		TX73_018055	0.89	+0.2
3,937,063	+		TX73_018055	0.90	+0.2
3,937,096	+				-0.5
3,937,136	-				+1.2
3,937,136	-				+0.5
3,937,138	-				-0.6
3,937,147	+				-0.1
3,937,168	+				-0.2
3,937,181	+				-0.6
3,937,187	+				+0.1
3,937,195	+				+0.7
3,937,203	+				+0.5
3,937,237	+				+0.4
3,937,237	+				+0.1
3,937,249	+				-0.0
3,937,254	-				+0.3
3,937,280	+				+0.2
3,937,283	-				-0.0
3,937,288	-				-1.7
3,937,288	-				+0.0
3,937,292	+				-0.4
3,937,300	-				+0.2
3,937,308	+				-0.4
3,937,308	+				+0.4
3,937,335	+				-0.1
3,937,339	+				-0.0
3,937,359	-				+0.2
3,937,366	+				-0.3
3,937,398	+				-0.2
3,937,435	+				+1.0
3,937,443	-				+0.2
3,937,443	-				-0.2
3,937,466	+				-0.0
3,937,479	-				+0.6
3,937,583	-		TX73_018060	0.24	+0.1
3,937,653	+		TX73_018060	0.35	-0.1
3,937,658	+		TX73_018060	0.36	+0.2
3,937,658	+		TX73_018060	0.36	+0.4
3,937,658	+		TX73_018060	0.36	-0.8
3,937,658	+		TX73_018060	0.36	+0.3
3,937,658	+		TX73_018060	0.36	+0.2
3,937,658	+		TX73_018060	0.36	-0.4
3,937,666	-		TX73_018060	0.37	+0.4
3,937,666	-		TX73_018060	0.37	-0.2
3,937,699	-		TX73_018060	0.42	-0.8
3,937,789	-		TX73_018060	0.57	+1.0
3,937,796	+		TX73_018060	0.58	+0.2
3,937,796	+		TX73_018060	0.58	+0.2
3,937,799	-		TX73_018060	0.59	+0.4
3,937,829	+		TX73_018060	0.64	+0.1
3,937,846	-		TX73_018060	0.66	-0.7
3,937,899	-		TX73_018060	0.75	+0.3
3,937,917	+		TX73_018060	0.78	-0.1
3,937,917	+		TX73_018060	0.78	-0.4
3,937,923	-		TX73_018060	0.79	+0.4
3,937,949	+		TX73_018060	0.83	+0.9
3,937,949	+		TX73_018060	0.83	-0.2
3,937,949	+		TX73_018060	0.83	+0.1
3,937,949	+		TX73_018060	0.83	+0.4
3,937,949	+		TX73_018060	0.83	+0.0
3,937,949	+		TX73_018060	0.83	-0.4
3,937,949	+		TX73_018060	0.83	-0.2
3,937,949	+		TX73_018060	0.83	-0.6
3,937,949	+		TX73_018060	0.83	+0.3
3,937,949	+		TX73_018060	0.83	+0.1
3,937,949	+		TX73_018060	0.83	-1.3
3,937,951	+		TX73_018060	0.83	-0.2
3,937,957	-		TX73_018060	0.84	-0.0
3,937,957	-		TX73_018060	0.84	+0.1
3,937,957	-		TX73_018060	0.84	+0.5
3,937,959	+		TX73_018060	0.85	-0.2
3,937,997	-				-0.3
3,938,041	-				-0.8
3,938,041	-				+0.1
3,938,050	-				-0.4
3,938,060	+				-0.7
3,938,060	+				+0.2
3,938,068	-				+0.3
3,938,068	-				-0.4
3,938,072	+				+0.6
3,938,125	-				+0.2
3,938,125	-				-0.6
3,938,137	+				-1.9
3,938,137	+				-0.0
3,938,137	+				+0.5
3,938,187	+				+0.4
3,938,187	+				+0.5
3,938,283	-		TX73_018065	0.15	-0.2
3,938,283	-		TX73_018065	0.15	-0.6
3,938,286	+		TX73_018065	0.15	-0.2
3,938,286	+		TX73_018065	0.15	-0.3
3,938,286	+		TX73_018065	0.15	+0.6
3,938,293	+		TX73_018065	0.16	+0.4
3,938,294	-		TX73_018065	0.16	-0.4
3,938,301	-		TX73_018065	0.16	+0.5
3,938,305	-		TX73_018065	0.16	+0.6
3,938,314	+		TX73_018065	0.17	+0.4
3,938,314	+		TX73_018065	0.17	-0.5
3,938,314	+		TX73_018065	0.17	+0.2
3,938,314	+		TX73_018065	0.17	+0.3
3,938,314	+		TX73_018065	0.17	+0.9
3,938,314	+		TX73_018065	0.17	+0.2
3,938,322	-		TX73_018065	0.18	-0.3
3,938,322	-		TX73_018065	0.18	+0.0
3,938,333	+		TX73_018065	0.18	+0.4
3,938,333	+		TX73_018065	0.18	+0.0
3,938,341	-		TX73_018065	0.19	-0.4
3,938,341	-		TX73_018065	0.19	-0.7
3,938,341	-		TX73_018065	0.19	-0.1
3,938,341	-		TX73_018065	0.19	-1.2
3,938,348	+		TX73_018065	0.19	+0.0
3,938,356	-		TX73_018065	0.20	-0.4
3,938,377	+		TX73_018065	0.21	-0.0
3,938,431	+		TX73_018065	0.25	+0.0
3,938,439	-		TX73_018065	0.25	+0.2
3,938,439	-		TX73_018065	0.25	-0.4
3,938,542	-		TX73_018065	0.32	-0.9
3,938,554	+		TX73_018065	0.33	-0.6
3,938,617	+		TX73_018065	0.37	-1.1
3,938,632	-		TX73_018065	0.38	-0.0
3,938,641	+		TX73_018065	0.39	-0.0
3,938,641	+		TX73_018065	0.39	-0.7
3,938,755	+		TX73_018065	0.46	-0.3
3,938,763	-		TX73_018065	0.47	-1.6
3,938,763	-		TX73_018065	0.47	-0.0
3,938,803	+		TX73_018065	0.49	+0.2
3,938,844	+		TX73_018065	0.52	-0.2
3,938,865	-		TX73_018065	0.54	-0.6
3,938,882	-		TX73_018065	0.55	-0.0
3,938,894	+		TX73_018065	0.56	-0.0
3,938,894	+		TX73_018065	0.56	+0.0
3,938,902	-		TX73_018065	0.56	-1.3
3,938,912	+		TX73_018065	0.57	-1.8
3,938,912	-		TX73_018065	0.57	+1.4
3,938,912	-		TX73_018065	0.57	+0.0
3,938,945	-		TX73_018065	0.59	+0.5
3,938,962	+		TX73_018065	0.60	+0.0
3,939,060	-		TX73_018065	0.67	-0.2
3,939,083	+		TX73_018065	0.68	+0.1
3,939,083	+		TX73_018065	0.68	-0.6
3,939,111	+		TX73_018065	0.70	+0.1
3,939,111	+		TX73_018065	0.70	-0.0
3,939,119	-		TX73_018065	0.70	-0.9
3,939,121	+		TX73_018065	0.71	+0.1
3,939,124	-		TX73_018065	0.71	+0.1
3,939,129	-		TX73_018065	0.71	-1.0
3,939,129	-		TX73_018065	0.71	+0.7
3,939,151	+		TX73_018065	0.73	-0.2
3,939,161	+		TX73_018065	0.73	-2.4
3,939,189	+		TX73_018065	0.75	+0.6
3,939,194	+		TX73_018065	0.75	-1.2
3,939,221	+		TX73_018065	0.77	-0.2
3,939,229	-		TX73_018065	0.78	-0.3
3,939,230	-		TX73_018065	0.78	-0.4
3,939,285	-		TX73_018065	0.81	-0.0
3,939,297	-		TX73_018065	0.82	-0.6
3,939,343	+		TX73_018065	0.85	-1.0
3,939,348	+		TX73_018065	0.86	+0.2
3,939,353	+		TX73_018065	0.86	-1.2
3,939,355	+		TX73_018065	0.86	-0.8
3,939,361	-		TX73_018065	0.87	-0.3
3,939,363	-		TX73_018065	0.87	-0.1
3,939,363	-		TX73_018065	0.87	-0.5
3,939,377	+		TX73_018065	0.88	+0.7
3,939,385	+		TX73_018065	0.88	+0.4
3,939,388	-		TX73_018065	0.88	-1.3
3,939,391	+		TX73_018065	0.89	-0.1
3,939,393	+		TX73_018065	0.89	-0.7
3,939,399	-		TX73_018065	0.89	-0.1
3,939,437	+				-1.0
3,939,437	+				+0.3
3,939,445	-				-0.5
3,939,445	-				+0.1
3,939,474	+				-1.0
3,939,485	+				-0.2
3,939,487	+				-0.6
3,939,487	+				+0.2
3,939,487	-				-0.2
3,939,487	-				-0.5
3,939,495	-				+0.4
3,939,511	+				-0.7
3,939,519	-				-0.8
3,939,526	+				-0.1
3,939,526	+				+0.1
3,939,534	-				+0.0
3,939,534	-				-0.4
3,939,547	-				+0.8
3,939,567	-				+0.0
3,939,575	+				-0.1
3,939,575	+				-0.0
3,939,604	+				-0.2
3,939,606	+				+0.3
3,939,606	+				-0.0
3,939,612	-				-0.3
3,939,612	-				-0.4
3,939,635	+				-0.4
3,939,657	+				-0.3
3,939,665	-				+0.1
3,939,670	-				-0.4
3,939,745	-				+0.2
3,939,747	+				-0.2
3,939,747	+				+0.4
3,939,768	-				-0.1
3,939,770	+				+0.5
3,939,778	-				+0.1
3,939,784	-				-0.6
3,939,789	-				-1.2
3,939,789	-				+0.2
3,939,791	+				-0.9
3,939,791	+				-0.4
3,939,791	+				-0.2
3,939,794	-				-0.7
3,939,799	-		TX73_018070	0.10	-1.0
3,939,799	-		TX73_018070	0.10	+0.6
3,939,804	-		TX73_018070	0.13	-0.5
3,939,809	-		TX73_018070	0.15	-0.5
3,939,816	+		TX73_018070	0.19	+0.5
3,939,857	-		TX73_018070	0.39	-0.0
3,939,858	-		TX73_018070	0.40	+0.4
3,939,871	+		TX73_018070	0.46	-0.2
3,939,890	-		TX73_018070	0.56	+0.8
3,939,891	+		TX73_018070	0.56	-0.8
3,939,910	+		TX73_018070	0.66	-0.6
3,939,910	+		TX73_018070	0.66	-0.2
3,939,952	-		TX73_018070	0.87	-0.3
3,939,952	-		TX73_018070	0.87	-0.6
3,939,966	+				+0.2
3,939,966	+				-0.7
3,939,966	+				+0.6
3,939,974	-				-0.8
3,940,039	+				-0.5
3,940,098	+				-0.6
3,940,104	-				-1.2
3,940,106	-				+0.5
3,940,106	-				-0.1
3,940,129	-				-0.4
3,940,185	+				-0.4
3,940,219	+				+0.2
3,940,227	-				-0.9
3,940,235	-				+0.3
3,940,241	-				+0.1
3,940,242	+				+1.5
3,940,275	+				+1.2
3,940,283	+				-0.4
3,940,289	-				+0.9
3,940,301	-				+0.2
3,940,341	-		TX73_018075	0.13	+1.2
3,940,361	+		TX73_018075	0.15	-0.7
3,940,361	+		TX73_018075	0.15	-0.0
3,940,361	+		TX73_018075	0.15	-0.0
3,940,361	+		TX73_018075	0.15	+0.3
3,940,361	+		TX73_018075	0.15	+1.3
3,940,369	-		TX73_018075	0.16	+0.5
3,940,369	-		TX73_018075	0.16	-0.2
3,940,369	-		TX73_018075	0.16	+1.8
3,940,379	-		TX73_018075	0.17	+1.5
3,940,447	-		TX73_018075	0.24	+2.1
3,940,452	-		TX73_018075	0.25	+1.8
3,940,471	+		TX73_018075	0.27	-1.6
3,940,479	-		TX73_018075	0.28	+0.2
3,940,485	-		TX73_018075	0.28	+0.9
3,940,516	+		TX73_018075	0.32	+2.9
3,940,524	-		TX73_018075	0.33	+1.4
3,940,539	-		TX73_018075	0.34	-0.9