Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_006055

Experiment: PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM
1,287,188	-		TX73_006050	0.33	+0.4
1,287,211	+		TX73_006050	0.35	+0.1
1,287,258	+		TX73_006050	0.39	+0.6
1,287,263	+		TX73_006050	0.39	-0.1
1,287,313	+		TX73_006050	0.43	-0.3
1,287,314	+		TX73_006050	0.43	-1.1
1,287,322	-		TX73_006050	0.43	-0.6
1,287,338	-		TX73_006050	0.45	-0.3
1,287,351	+		TX73_006050	0.46	+0.7
1,287,353	+		TX73_006050	0.46	-0.0
1,287,362	+		TX73_006050	0.46	+0.3
1,287,362	+		TX73_006050	0.46	-0.6
1,287,370	-		TX73_006050	0.47	-0.1
1,287,370	-		TX73_006050	0.47	-0.3
1,287,376	-		TX73_006050	0.47	+0.1
1,287,385	-		TX73_006050	0.48	-1.0
1,287,387	+		TX73_006050	0.48	+0.2
1,287,395	-		TX73_006050	0.49	+0.1
1,287,462	+		TX73_006050	0.54	-0.3
1,287,473	-		TX73_006050	0.55	-0.5
1,287,498	+		TX73_006050	0.56	+0.1
1,287,498	+		TX73_006050	0.56	-0.7
1,287,510	+		TX73_006050	0.57	-0.1
1,287,530	+		TX73_006050	0.59	+0.1
1,287,530	+		TX73_006050	0.59	+0.1
1,287,538	-		TX73_006050	0.59	+0.0
1,287,544	+		TX73_006050	0.60	+0.1
1,287,551	+		TX73_006050	0.60	-0.4
1,287,553	-		TX73_006050	0.61	+2.1
1,287,573	+		TX73_006050	0.62	-1.1
1,287,579	+		TX73_006050	0.62	+0.1
1,287,581	-		TX73_006050	0.63	-0.1
1,287,587	-		TX73_006050	0.63	-0.2
1,287,618	+		TX73_006050	0.65	+0.4
1,287,631	-		TX73_006050	0.66	-0.2
1,287,631	-		TX73_006050	0.66	-0.2
1,287,638	+		TX73_006050	0.67	+0.6
1,287,645	+		TX73_006050	0.67	+0.7
1,287,650	+		TX73_006050	0.68	+0.3
1,287,653	-		TX73_006050	0.68	+1.4
1,287,653	-		TX73_006050	0.68	-0.7
1,287,663	-		TX73_006050	0.69	-0.1
1,287,667	+		TX73_006050	0.69	+0.2
1,287,667	+		TX73_006050	0.69	+0.0
1,287,667	+		TX73_006050	0.69	+0.2
1,287,675	-		TX73_006050	0.70	+0.2
1,287,675	-		TX73_006050	0.70	+0.3
1,287,675	-		TX73_006050	0.70	-0.3
1,287,701	+		TX73_006050	0.71	-0.1
1,287,712	+		TX73_006050	0.72	-0.7
1,287,712	+		TX73_006050	0.72	+0.4
1,287,714	-		TX73_006050	0.72	+0.1
1,287,728	+		TX73_006050	0.73	+0.2
1,287,736	-		TX73_006050	0.74	+0.3
1,287,755	+		TX73_006050	0.76	+0.2
1,287,755	-		TX73_006050	0.76	-0.5
1,287,814	-		TX73_006050	0.80	-0.6
1,287,853	-		TX73_006050	0.83	+0.2
1,287,870	+		TX73_006050	0.84	-0.5
1,287,870	-		TX73_006050	0.84	+1.0
1,287,887	+		TX73_006050	0.85	+0.0
1,287,925	+		TX73_006050	0.88	-0.2
1,287,927	-		TX73_006050	0.88	+0.2
1,287,960	+				+0.6
1,287,960	+				-0.7
1,287,966	+				-0.2
1,287,968	+				+0.2
1,287,971	+				-0.4
1,287,993	+				+0.2
1,287,993	+				-0.2
1,288,001	-				+0.0
1,288,001	-				-0.3
1,288,001	-				+0.0
1,288,011	+				+0.1
1,288,025	-				-1.5
1,288,031	-				+0.0
1,288,052	-				+0.6
1,288,063	-				-0.1
1,288,099	+				-0.5
1,288,183	-				-0.2
1,288,219	-				+0.8
1,288,227	+				-0.1
1,288,228	-				-0.4
1,288,240	+				+0.7
1,288,242	+				+0.5
1,288,242	+				+0.4
1,288,250	-				+0.3
1,288,258	-				-0.4
1,288,305	+				+0.8
1,288,309	+				-0.4
1,288,324	+				+0.1
1,288,332	-				-0.2
1,288,334	+				+0.4
1,288,334	-				+0.1
1,288,357	+		TX73_006055	0.11	+0.1
1,288,357	+		TX73_006055	0.11	-0.5
1,288,384	+		TX73_006055	0.13	-0.1
1,288,398	+		TX73_006055	0.14	+0.4
1,288,447	+		TX73_006055	0.17	+0.2
1,288,481	+		TX73_006055	0.19	-0.1
1,288,486	+		TX73_006055	0.19	+0.0
1,288,489	-		TX73_006055	0.20	+0.3
1,288,489	-		TX73_006055	0.20	+0.1
1,288,489	-		TX73_006055	0.20	-1.9
1,288,491	+		TX73_006055	0.20	+0.2
1,288,522	+		TX73_006055	0.22	-0.6
1,288,522	+		TX73_006055	0.22	+0.1
1,288,522	+		TX73_006055	0.22	+0.2
1,288,524	+		TX73_006055	0.22	-0.3
1,288,530	-		TX73_006055	0.22	+0.2
1,288,550	+		TX73_006055	0.24	-0.4
1,288,558	-		TX73_006055	0.24	+0.4
1,288,573	+		TX73_006055	0.25	+0.9
1,288,574	+		TX73_006055	0.25	-0.3
1,288,582	-		TX73_006055	0.26	-0.7
1,288,582	-		TX73_006055	0.26	+0.1
1,288,582	-		TX73_006055	0.26	-0.3
1,288,582	-		TX73_006055	0.26	+0.7
1,288,590	+		TX73_006055	0.26	-0.7
1,288,603	-		TX73_006055	0.27	+0.1
1,288,605	+		TX73_006055	0.27	-0.5
1,288,613	-		TX73_006055	0.28	-0.7
1,288,613	-		TX73_006055	0.28	+0.2
1,288,613	-		TX73_006055	0.28	+0.6
1,288,623	+		TX73_006055	0.28	+0.2
1,288,638	+		TX73_006055	0.29	-0.1
1,288,646	-		TX73_006055	0.30	-0.0
1,288,654	+		TX73_006055	0.30	-0.2
1,288,662	-		TX73_006055	0.31	-0.3
1,288,695	-		TX73_006055	0.33	-0.1
1,288,696	-		TX73_006055	0.33	-0.5
1,288,697	-		TX73_006055	0.33	-0.0
1,288,742	-		TX73_006055	0.36	-0.1
1,288,789	-		TX73_006055	0.39	-0.2
1,288,800	+		TX73_006055	0.40	+0.8
1,288,803	-		TX73_006055	0.40	+0.1
1,288,813	-		TX73_006055	0.40	+0.4
1,288,818	-		TX73_006055	0.41	-0.2
1,288,833	-		TX73_006055	0.42	-0.2
1,288,835	+		TX73_006055	0.42	-0.2
1,288,851	+		TX73_006055	0.43	+0.5
1,288,854	-		TX73_006055	0.43	-0.2
1,288,902	+		TX73_006055	0.46	+0.0
1,288,936	+		TX73_006055	0.48	-0.9
1,288,950	+		TX73_006055	0.49	-0.0
1,288,951	-		TX73_006055	0.49	-0.2
1,288,951	-		TX73_006055	0.49	+0.2
1,288,958	-		TX73_006055	0.50	-0.0
1,288,975	+		TX73_006055	0.51	-0.2
1,288,983	-		TX73_006055	0.51	-0.2
1,288,983	-		TX73_006055	0.51	+0.6
1,288,983	-		TX73_006055	0.51	+0.9
1,288,988	-		TX73_006055	0.52	-0.5
1,288,988	-		TX73_006055	0.52	-0.3
1,288,991	-		TX73_006055	0.52	+0.2
1,289,015	-		TX73_006055	0.53	-1.0
1,289,028	+		TX73_006055	0.54	+0.6
1,289,068	-		TX73_006055	0.57	+0.3
1,289,095	+		TX73_006055	0.58	+0.5
1,289,120	-		TX73_006055	0.60	+0.6
1,289,122	+		TX73_006055	0.60	-0.1
1,289,139	+		TX73_006055	0.61	+0.1
1,289,174	+		TX73_006055	0.63	-0.5
1,289,175	+		TX73_006055	0.63	-0.9
1,289,220	+		TX73_006055	0.66	-0.1
1,289,236	-		TX73_006055	0.67	-0.1
1,289,250	+		TX73_006055	0.68	-0.5
1,289,250	+		TX73_006055	0.68	+0.4
1,289,250	+		TX73_006055	0.68	+0.4
1,289,250	+		TX73_006055	0.68	+0.4
1,289,250	+		TX73_006055	0.68	+0.1
1,289,250	+		TX73_006055	0.68	-0.2
1,289,250	+		TX73_006055	0.68	+0.3
1,289,250	+		TX73_006055	0.68	+0.1
1,289,250	+		TX73_006055	0.68	-0.1
1,289,250	+		TX73_006055	0.68	-0.4
1,289,250	+		TX73_006055	0.68	+0.1
1,289,250	+		TX73_006055	0.68	+0.4
1,289,250	+		TX73_006055	0.68	+0.2
1,289,250	+		TX73_006055	0.68	+0.2
1,289,250	+		TX73_006055	0.68	-0.1
1,289,250	+		TX73_006055	0.68	+0.0
1,289,250	+		TX73_006055	0.68	+0.4
1,289,250	+		TX73_006055	0.68	-0.5
1,289,250	+		TX73_006055	0.68	+0.1
1,289,250	+		TX73_006055	0.68	-0.0
1,289,250	+		TX73_006055	0.68	+0.4
1,289,253	-		TX73_006055	0.68	-0.4
1,289,258	-		TX73_006055	0.69	-0.9
1,289,258	-		TX73_006055	0.69	-0.3
1,289,258	-		TX73_006055	0.69	-0.4
1,289,258	-		TX73_006055	0.69	+0.1
1,289,258	-		TX73_006055	0.69	+0.3
1,289,258	-		TX73_006055	0.69	+0.1
1,289,258	-		TX73_006055	0.69	-1.5
1,289,258	-		TX73_006055	0.69	-0.3
1,289,258	-		TX73_006055	0.69	-0.3
1,289,258	-		TX73_006055	0.69	-0.0
1,289,258	-		TX73_006055	0.69	-0.0
1,289,258	-		TX73_006055	0.69	+0.1
1,289,258	-		TX73_006055	0.69	+0.2
1,289,258	-		TX73_006055	0.69	+0.0
1,289,260	+		TX73_006055	0.69	+0.1
1,289,335	+		TX73_006055	0.74	-0.1
1,289,343	+		TX73_006055	0.74	-0.1
1,289,377	-		TX73_006055	0.76	-0.2
1,289,389	-		TX73_006055	0.77	+0.5
1,289,415	-		TX73_006055	0.79	+0.7
1,289,423	+		TX73_006055	0.79	-0.1
1,289,444	-		TX73_006055	0.81	-0.5
1,289,469	+		TX73_006055	0.82	-0.4
1,289,477	-		TX73_006055	0.83	-0.3
1,289,491	+		TX73_006055	0.84	+0.4
1,289,491	+		TX73_006055	0.84	-0.4
1,289,551	-		TX73_006055	0.87	+0.7
1,289,557	-		TX73_006055	0.88	+0.3
1,289,600	-				+0.7
1,289,622	-				+0.4
1,289,740	+				+0.1
1,289,794	+				+0.8
1,289,813	+				-0.3
1,289,821	-				+0.0
1,289,827	+				+0.0
1,289,827	+				-0.4
1,289,827	+				+0.0
1,289,830	+				-0.6
1,289,835	-				-0.7
1,289,835	-				-0.7
1,289,835	-				-0.3
1,289,840	+				-0.2
1,289,840	+				+0.6
1,289,840	+				-0.2
1,289,842	+				-0.8
1,289,848	-		TX73_006060	0.10	+0.3
1,289,849	+		TX73_006060	0.11	-0.3
1,289,849	+		TX73_006060	0.11	-0.3
1,289,849	+		TX73_006060	0.11	-0.4
1,289,849	+		TX73_006060	0.11	+0.5
1,289,857	-		TX73_006060	0.11	-1.6
1,289,864	+		TX73_006060	0.12	-0.0
1,289,872	-		TX73_006060	0.13	-0.5
1,289,879	+		TX73_006060	0.14	+0.3
1,289,879	+		TX73_006060	0.14	+0.1
1,289,879	+		TX73_006060	0.14	-0.5
1,289,881	+		TX73_006060	0.14	+0.4
1,289,887	-		TX73_006060	0.15	-0.5
1,289,887	-		TX73_006060	0.15	-0.3
1,289,889	-		TX73_006060	0.15	-0.5
1,289,889	-		TX73_006060	0.15	+0.2
1,289,905	-		TX73_006060	0.17	+0.1
1,289,964	-		TX73_006060	0.24	-0.2
1,289,979	+		TX73_006060	0.26	-0.2
1,289,987	-		TX73_006060	0.27	+0.1
1,289,991	-		TX73_006060	0.27	-0.4
1,290,028	+		TX73_006060	0.31	+0.4
1,290,045	+		TX73_006060	0.33	+0.2
1,290,045	+		TX73_006060	0.33	-0.0
1,290,113	+		TX73_006060	0.41	+0.0
1,290,150	+		TX73_006060	0.46	-0.5
1,290,153	-		TX73_006060	0.46	+0.2
1,290,190	-		TX73_006060	0.50	+0.3
1,290,190	-		TX73_006060	0.50	+0.3
1,290,225	+		TX73_006060	0.55	-0.7
1,290,225	+		TX73_006060	0.55	-0.3
1,290,230	+		TX73_006060	0.55	+0.4
1,290,235	+		TX73_006060	0.56	-0.1
1,290,245	+		TX73_006060	0.57	+0.6
1,290,253	-		TX73_006060	0.58	-0.7
1,290,286	-		TX73_006060	0.62	-0.6
1,290,288	-		TX73_006060	0.62	+1.0
1,290,325	-		TX73_006060	0.66	+0.3
1,290,337	-		TX73_006060	0.68	+0.3
1,290,362	+		TX73_006060	0.71	-0.5
1,290,370	-		TX73_006060	0.71	+0.2
1,290,370	-		TX73_006060	0.71	+0.3
1,290,370	-		TX73_006060	0.71	-0.4
1,290,413	+		TX73_006060	0.76	+0.2
1,290,425	+		TX73_006060	0.78	+0.1
1,290,454	-		TX73_006060	0.81	-0.6
1,290,472	+		TX73_006060	0.83	-0.4
1,290,480	-		TX73_006060	0.84	-0.4
1,290,480	-		TX73_006060	0.84	-0.4
1,290,480	-		TX73_006060	0.84	-0.0
1,290,485	+		TX73_006060	0.85	+0.1
1,290,529	-				-0.1
1,290,531	-				-0.1
1,290,595	-				+0.2
1,290,595	-				-0.6
1,290,602	-				-0.4
1,290,604	+				-0.1
1,290,604	+				+0.0
1,290,609	+				+0.1
1,290,609	+				-0.0
1,290,617	-				-0.5
1,290,651	-				-0.0
1,290,707	+				-0.3
1,290,719	-				+0.2