Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS17925

Experiment: Ying_Others16 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS17910 and ABIE51_RS17915 are separated by 7 nucleotidesABIE51_RS17915 and ABIE51_RS17920 are separated by 177 nucleotidesABIE51_RS17920 and ABIE51_RS17925 are separated by 7 nucleotidesABIE51_RS17925 and ABIE51_RS17930 overlap by 11 nucleotides ABIE51_RS17910: ABIE51_RS17910 - BamA/TamA family outer membrane protein, at 3,909,836 to 3,911,047 _RS17910 ABIE51_RS17915: ABIE51_RS17915 - low affinity iron permease family protein, at 3,911,055 to 3,911,546 _RS17915 ABIE51_RS17920: ABIE51_RS17920 - hypothetical protein, at 3,911,724 to 3,911,912 _RS17920 ABIE51_RS17925: ABIE51_RS17925 - DUF3182 family protein, at 3,911,920 to 3,913,089 _RS17925 ABIE51_RS17930: ABIE51_RS17930 - alpha/beta fold hydrolase, at 3,913,079 to 3,913,867 _RS17930 Position (kb) 3911 3912 3913 3914Strain fitness (log2 ratio) -1 0 1 2at 3910.973 kb on + strandat 3910.973 kb on + strandat 3910.973 kb on + strandat 3911.018 kb on + strandat 3911.018 kb on + strandat 3911.018 kb on + strandat 3911.185 kb on + strand, within ABIE51_RS17915at 3911.187 kb on - strand, within ABIE51_RS17915at 3911.219 kb on - strand, within ABIE51_RS17915at 3911.546 kb on + strandat 3911.546 kb on + strandat 3911.682 kb on + strandat 3911.683 kb on - strandat 3911.683 kb on - strandat 3911.683 kb on - strandat 3911.738 kb on + strandat 3911.738 kb on + strandat 3911.738 kb on + strandat 3911.739 kb on - strandat 3911.739 kb on - strandat 3911.739 kb on - strandat 3911.739 kb on - strandat 3911.814 kb on - strand, within ABIE51_RS17920at 3912.121 kb on + strand, within ABIE51_RS17925at 3912.122 kb on - strand, within ABIE51_RS17925at 3912.562 kb on + strand, within ABIE51_RS17925at 3912.604 kb on + strand, within ABIE51_RS17925at 3912.809 kb on - strand, within ABIE51_RS17925at 3912.809 kb on - strand, within ABIE51_RS17925at 3913.048 kb on + strandat 3913.048 kb on + strandat 3913.049 kb on - strandat 3913.406 kb on + strand, within ABIE51_RS17930at 3913.406 kb on + strand, within ABIE51_RS17930at 3913.416 kb on - strand, within ABIE51_RS17930at 3913.482 kb on - strand, within ABIE51_RS17930at 3913.545 kb on - strand, within ABIE51_RS17930at 3913.602 kb on - strand, within ABIE51_RS17930at 3913.670 kb on + strand, within ABIE51_RS17930at 3913.670 kb on + strand, within ABIE51_RS17930at 3913.671 kb on - strand, within ABIE51_RS17930at 3913.671 kb on - strand, within ABIE51_RS17930at 3913.763 kb on + strand, within ABIE51_RS17930at 3913.970 kb on + strandat 3913.970 kb on + strandat 3913.970 kb on + strandat 3913.971 kb on - strandat 3914.027 kb on + strandat 3914.027 kb on + strandat 3914.028 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1
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3,910,973 + -0.3
3,910,973 + +0.2
3,910,973 + -0.0
3,911,018 + -0.5
3,911,018 + +0.5
3,911,018 + +0.5
3,911,185 + ABIE51_RS17915 0.26 +0.3
3,911,187 - ABIE51_RS17915 0.27 -0.2
3,911,219 - ABIE51_RS17915 0.33 +0.0
3,911,546 + +0.2
3,911,546 + +1.0
3,911,682 + -0.7
3,911,683 - -0.1
3,911,683 - -0.2
3,911,683 - -0.1
3,911,738 + -0.4
3,911,738 + +1.0
3,911,738 + +0.2
3,911,739 - +0.3
3,911,739 - +0.1
3,911,739 - +0.7
3,911,739 - +1.4
3,911,814 - ABIE51_RS17920 0.48 +0.1
3,912,121 + ABIE51_RS17925 0.17 -0.4
3,912,122 - ABIE51_RS17925 0.17 +0.7
3,912,562 + ABIE51_RS17925 0.55 +0.3
3,912,604 + ABIE51_RS17925 0.58 +0.2
3,912,809 - ABIE51_RS17925 0.76 +0.1
3,912,809 - ABIE51_RS17925 0.76 +0.1
3,913,048 + -0.3
3,913,048 + +0.5
3,913,049 - -0.1
3,913,406 + ABIE51_RS17930 0.41 +0.2
3,913,406 + ABIE51_RS17930 0.41 -0.5
3,913,416 - ABIE51_RS17930 0.43 -1.4
3,913,482 - ABIE51_RS17930 0.51 +0.1
3,913,545 - ABIE51_RS17930 0.59 -0.2
3,913,602 - ABIE51_RS17930 0.66 +0.7
3,913,670 + ABIE51_RS17930 0.75 +2.6
3,913,670 + ABIE51_RS17930 0.75 +1.0
3,913,671 - ABIE51_RS17930 0.75 +0.1
3,913,671 - ABIE51_RS17930 0.75 -0.3
3,913,763 + ABIE51_RS17930 0.87 +0.0
3,913,970 + +0.4
3,913,970 + +0.1
3,913,970 + +0.0
3,913,971 - -0.6
3,914,027 + -0.1
3,914,027 + -0.4
3,914,028 - +0.5

Or see this region's nucleotide sequence