Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS17910 and ABIE51_RS17915 are separated by 7 nucleotides ABIE51_RS17915 and ABIE51_RS17920 are separated by 177 nucleotides ABIE51_RS17920 and ABIE51_RS17925 are separated by 7 nucleotides ABIE51_RS17925 and ABIE51_RS17930 overlap by 11 nucleotides
ABIE51_RS17910: ABIE51_RS17910 - BamA/TamA family outer membrane protein, at 3,909,836 to 3,911,047
_RS17910
ABIE51_RS17915: ABIE51_RS17915 - low affinity iron permease family protein, at 3,911,055 to 3,911,546
_RS17915
ABIE51_RS17920: ABIE51_RS17920 - hypothetical protein, at 3,911,724 to 3,911,912
_RS17920
ABIE51_RS17925: ABIE51_RS17925 - DUF3182 family protein, at 3,911,920 to 3,913,089
_RS17925
ABIE51_RS17930: ABIE51_RS17930 - alpha/beta fold hydrolase, at 3,913,079 to 3,913,867
_RS17930
Position (kb)
3911
3912
3913
3914 Strain fitness (log2 ratio)
-1
0
1
2 at 3910.973 kb on + strand at 3910.973 kb on + strand at 3910.973 kb on + strand at 3911.018 kb on + strand at 3911.018 kb on + strand at 3911.018 kb on + strand at 3911.185 kb on + strand, within ABIE51_RS17915 at 3911.187 kb on - strand, within ABIE51_RS17915 at 3911.219 kb on - strand, within ABIE51_RS17915 at 3911.546 kb on + strand at 3911.546 kb on + strand at 3911.682 kb on + strand at 3911.683 kb on - strand at 3911.683 kb on - strand at 3911.683 kb on - strand at 3911.738 kb on + strand at 3911.738 kb on + strand at 3911.738 kb on + strand at 3911.739 kb on - strand at 3911.739 kb on - strand at 3911.739 kb on - strand at 3911.739 kb on - strand at 3911.814 kb on - strand, within ABIE51_RS17920 at 3912.121 kb on + strand, within ABIE51_RS17925 at 3912.122 kb on - strand, within ABIE51_RS17925 at 3912.562 kb on + strand, within ABIE51_RS17925 at 3912.604 kb on + strand, within ABIE51_RS17925 at 3912.809 kb on - strand, within ABIE51_RS17925 at 3912.809 kb on - strand, within ABIE51_RS17925 at 3913.048 kb on + strand at 3913.048 kb on + strand at 3913.049 kb on - strand at 3913.406 kb on + strand, within ABIE51_RS17930 at 3913.406 kb on + strand, within ABIE51_RS17930 at 3913.416 kb on - strand, within ABIE51_RS17930 at 3913.482 kb on - strand, within ABIE51_RS17930 at 3913.545 kb on - strand, within ABIE51_RS17930 at 3913.602 kb on - strand, within ABIE51_RS17930 at 3913.670 kb on + strand, within ABIE51_RS17930 at 3913.670 kb on + strand, within ABIE51_RS17930 at 3913.671 kb on - strand, within ABIE51_RS17930 at 3913.671 kb on - strand, within ABIE51_RS17930 at 3913.763 kb on + strand, within ABIE51_RS17930 at 3913.970 kb on + strand at 3913.970 kb on + strand at 3913.970 kb on + strand at 3913.971 kb on - strand at 3914.027 kb on + strand at 3914.027 kb on + strand at 3914.028 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 3,910,973 + -0.3 3,910,973 + +0.2 3,910,973 + -0.0 3,911,018 + -0.5 3,911,018 + +0.5 3,911,018 + +0.5 3,911,185 + ABIE51_RS17915 0.26 +0.3 3,911,187 - ABIE51_RS17915 0.27 -0.2 3,911,219 - ABIE51_RS17915 0.33 +0.0 3,911,546 + +0.2 3,911,546 + +1.0 3,911,682 + -0.7 3,911,683 - -0.1 3,911,683 - -0.2 3,911,683 - -0.1 3,911,738 + -0.4 3,911,738 + +1.0 3,911,738 + +0.2 3,911,739 - +0.3 3,911,739 - +0.1 3,911,739 - +0.7 3,911,739 - +1.4 3,911,814 - ABIE51_RS17920 0.48 +0.1 3,912,121 + ABIE51_RS17925 0.17 -0.4 3,912,122 - ABIE51_RS17925 0.17 +0.7 3,912,562 + ABIE51_RS17925 0.55 +0.3 3,912,604 + ABIE51_RS17925 0.58 +0.2 3,912,809 - ABIE51_RS17925 0.76 +0.1 3,912,809 - ABIE51_RS17925 0.76 +0.1 3,913,048 + -0.3 3,913,048 + +0.5 3,913,049 - -0.1 3,913,406 + ABIE51_RS17930 0.41 +0.2 3,913,406 + ABIE51_RS17930 0.41 -0.5 3,913,416 - ABIE51_RS17930 0.43 -1.4 3,913,482 - ABIE51_RS17930 0.51 +0.1 3,913,545 - ABIE51_RS17930 0.59 -0.2 3,913,602 - ABIE51_RS17930 0.66 +0.7 3,913,670 + ABIE51_RS17930 0.75 +2.6 3,913,670 + ABIE51_RS17930 0.75 +1.0 3,913,671 - ABIE51_RS17930 0.75 +0.1 3,913,671 - ABIE51_RS17930 0.75 -0.3 3,913,763 + ABIE51_RS17930 0.87 +0.0 3,913,970 + +0.4 3,913,970 + +0.1 3,913,970 + +0.0 3,913,971 - -0.6 3,914,027 + -0.1 3,914,027 + -0.4 3,914,028 - +0.5
Or see this region's nucleotide sequence