Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS17190

Experiment: Ying_Others16 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 1
3,749,089	+		ABIE51_RS17185	0.33	-0.5
3,749,090	-		ABIE51_RS17185	0.33	-0.0
3,749,090	-		ABIE51_RS17185	0.33	-0.1
3,749,090	-		ABIE51_RS17185	0.33	-0.3
3,749,158	+		ABIE51_RS17185	0.39	+0.4
3,749,158	+		ABIE51_RS17185	0.39	+0.1
3,749,158	+		ABIE51_RS17185	0.39	-0.3
3,749,158	+		ABIE51_RS17185	0.39	-0.3
3,749,464	+		ABIE51_RS17185	0.68	-0.9
3,749,464	+		ABIE51_RS17185	0.68	+0.6
3,749,464	+		ABIE51_RS17185	0.68	-0.1
3,749,464	+		ABIE51_RS17185	0.68	-0.0
3,749,464	+		ABIE51_RS17185	0.68	-0.1
3,749,464	+		ABIE51_RS17185	0.68	-0.3
3,749,464	+		ABIE51_RS17185	0.68	-0.2
3,749,464	+		ABIE51_RS17185	0.68	+1.6
3,749,465	-		ABIE51_RS17185	0.68	-0.1
3,749,465	-		ABIE51_RS17185	0.68	+0.1
3,749,465	-		ABIE51_RS17185	0.68	+0.8
3,749,465	-		ABIE51_RS17185	0.68	+0.9
3,749,465	-		ABIE51_RS17185	0.68	+0.0
3,749,465	-		ABIE51_RS17185	0.68	+0.1
3,749,465	-		ABIE51_RS17185	0.68	-0.0
3,749,465	-		ABIE51_RS17185	0.68	+0.5
3,749,465	-		ABIE51_RS17185	0.68	-0.1
3,749,465	-		ABIE51_RS17185	0.68	-0.1
3,749,465	-		ABIE51_RS17185	0.68	-0.2
3,749,689	+		ABIE51_RS17185	0.89	+0.1
3,749,689	+		ABIE51_RS17185	0.89	-0.5
3,749,739	+				-0.4
3,749,739	+				-0.5
3,749,756	+				-0.1
3,749,804	+				-0.0
3,749,828	+				+1.4
3,749,828	+				-0.1
3,749,829	-				+1.0
3,749,829	-				-0.2
3,749,829	-				-0.2
3,749,829	-				-0.1
3,749,829	-				+0.1
3,749,854	+				+0.1
3,749,855	-				-0.0
3,749,855	-				-0.1
3,749,859	-				+0.2
3,749,904	+				-0.8
3,749,904	+				-1.1
3,749,904	+				-0.3
3,749,905	-				+0.5
3,750,040	+				-0.2
3,750,040	+				-0.7
3,750,040	+				-0.8
3,750,040	+				+0.3
3,750,040	+				+0.1
3,750,041	-				-0.1
3,750,041	-				-0.4
3,750,041	-				-0.6
3,750,041	-				-0.2
3,750,041	-				+0.1
3,750,041	-				+0.2
3,750,041	-				+0.4
3,750,042	+				+0.3
3,750,042	+				-0.5
3,750,042	+				+0.3
3,750,042	+				+0.6
3,750,043	-				+0.8
3,750,043	-				-0.1
3,750,043	-				+0.3
3,750,043	-				+1.9
3,750,043	-				+0.9
3,750,043	-				+1.8
3,750,043	-				+0.3
3,750,056	+				+0.8
3,750,056	+				-0.7
3,750,057	-				-0.5
3,750,057	-				+0.2
3,750,057	-				+1.3
3,750,090	-				+1.0
3,750,091	+				-0.4
3,750,091	+				-0.3
3,750,091	+				+0.4
3,750,091	+				+0.6
3,750,091	+				-0.2
3,750,091	+				+0.5
3,750,092	-				+0.2
3,750,092	-				+0.8
3,750,092	-				+0.2
3,750,092	-				-0.1
3,750,092	-				+1.0
3,750,092	-				+0.3
3,750,092	-				+0.2
3,750,168	+				-0.8
3,750,169	-				+1.0
3,750,171	+				+2.0
3,750,171	+				+0.0
3,750,172	-				-0.8
3,750,237	+				-0.3
3,750,237	+				-0.8
3,750,238	-				+0.0
3,750,238	-				+1.0
3,750,238	-				-1.3
3,750,498	+		ABIE51_RS17190	0.17	+0.4
3,750,499	-		ABIE51_RS17190	0.17	-0.3
3,750,504	+		ABIE51_RS17190	0.17	+2.0
3,750,504	+		ABIE51_RS17190	0.17	-0.1
3,750,571	+		ABIE51_RS17190	0.20	+0.0
3,750,642	+		ABIE51_RS17190	0.23	-0.3
3,750,642	+		ABIE51_RS17190	0.23	-0.6
3,750,642	+		ABIE51_RS17190	0.23	-0.6
3,750,642	+		ABIE51_RS17190	0.23	+0.4
3,750,643	-		ABIE51_RS17190	0.23	-0.6
3,750,765	+		ABIE51_RS17190	0.27	+0.0
3,750,766	-		ABIE51_RS17190	0.27	+0.0
3,750,766	-		ABIE51_RS17190	0.27	-0.6
3,750,873	+		ABIE51_RS17190	0.32	+1.0
3,750,874	-		ABIE51_RS17190	0.32	+0.8
3,750,874	-		ABIE51_RS17190	0.32	-1.0
3,750,882	+		ABIE51_RS17190	0.32	-0.6
3,750,883	-		ABIE51_RS17190	0.32	+0.0
3,750,883	-		ABIE51_RS17190	0.32	+0.7
3,750,948	+		ABIE51_RS17190	0.35	-0.3
3,751,024	-		ABIE51_RS17190	0.38	+0.0
3,751,378	+		ABIE51_RS17190	0.52	-0.8
3,751,704	+		ABIE51_RS17190	0.65	-0.6
3,751,705	-		ABIE51_RS17190	0.65	-1.0
3,751,716	+		ABIE51_RS17190	0.66	+2.0
3,751,717	-		ABIE51_RS17190	0.66	-0.6
3,752,119	-		ABIE51_RS17190	0.82	+0.0
3,752,119	-		ABIE51_RS17190	0.82	-1.4
3,752,263	-		ABIE51_RS17190	0.88	-1.0
3,752,263	-		ABIE51_RS17190	0.88	-1.4
3,752,295	+		ABIE51_RS17190	0.89	+0.4
3,752,295	+		ABIE51_RS17190	0.89	-0.8
3,752,295	+		ABIE51_RS17190	0.89	-0.8
3,752,295	+		ABIE51_RS17190	0.89	-0.8
3,752,296	-		ABIE51_RS17190	0.89	-0.3
3,752,296	-		ABIE51_RS17190	0.89	+0.0
3,752,296	-		ABIE51_RS17190	0.89	-0.8
3,752,355	+				+0.0
3,752,355	+				-1.7
3,752,356	-				+2.0
3,752,356	-				-0.6
3,752,514	+				+0.1
3,752,514	+				+2.3
3,752,515	-				+0.2
3,752,515	-				+1.1
3,752,515	-				+0.9
3,752,515	-				-0.9
3,752,523	+				-0.6
3,752,524	-				+0.8
3,752,587	+				-0.3
3,752,588	-				+0.3
3,752,588	-				+0.0
3,752,701	+				-0.4
3,752,701	+				-0.7
3,752,701	+				-0.2
3,752,702	-				+0.6
3,752,727	+				+0.4
3,752,727	+				+0.3
3,752,727	+				+0.1
3,752,727	+				+0.3
3,752,727	+				-0.2
3,752,727	+				+0.1
3,752,727	+				+0.0
3,752,727	+				+0.3
3,752,727	+				-0.1
3,752,727	+				+1.7
3,752,727	+				-0.3
3,752,727	+				-0.2
3,752,727	+				+0.6
3,752,727	+				+0.0
3,752,727	+				-1.8
3,752,727	+				+0.3
3,752,727	+				+0.0
3,752,728	-				+0.4
3,752,728	-				-0.2
3,752,728	-				+0.1
3,752,728	-				+0.3
3,752,728	-				+0.1
3,752,728	-				-1.1
3,752,728	-				+0.1
3,752,728	-				+0.2
3,752,728	-				-0.1
3,752,728	-				+0.8
3,752,728	-				+0.2
3,752,728	-				+0.7
3,752,910	+		ABIE51_RS17195	0.17	-0.1
3,752,910	+		ABIE51_RS17195	0.17	-0.0
3,752,911	-		ABIE51_RS17195	0.18	+0.2
3,752,911	-		ABIE51_RS17195	0.18	+0.3
3,753,006	+		ABIE51_RS17195	0.32	+1.2
3,753,007	-		ABIE51_RS17195	0.32	-0.2
3,753,007	-		ABIE51_RS17195	0.32	+1.1
3,753,272	-		ABIE51_RS17195	0.73	-0.1
3,753,319	+		ABIE51_RS17195	0.80	-0.1
3,753,319	+		ABIE51_RS17195	0.80	+0.2
3,753,319	+		ABIE51_RS17195	0.80	-0.9
3,753,319	+		ABIE51_RS17195	0.80	-0.1
3,753,319	+		ABIE51_RS17195	0.80	+0.0
3,753,319	+		ABIE51_RS17195	0.80	-0.4
3,753,320	-		ABIE51_RS17195	0.80	-0.5
3,753,320	-		ABIE51_RS17195	0.80	-0.5
3,753,320	-		ABIE51_RS17195	0.80	+0.4
3,753,320	-		ABIE51_RS17195	0.80	-0.2
3,753,320	-		ABIE51_RS17195	0.80	+0.1