Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS15620

Experiment: Ying_Others16 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 1
3,389,393	+		ABIE51_RS15615	0.19	-1.3
3,389,393	+		ABIE51_RS15615	0.19	-0.6
3,389,393	+		ABIE51_RS15615	0.19	+1.0
3,389,393	+		ABIE51_RS15615	0.19	-1.0
3,389,394	-		ABIE51_RS15615	0.20	-0.8
3,389,394	-		ABIE51_RS15615	0.20	-4.3
3,389,394	-		ABIE51_RS15615	0.20	-3.0
3,389,489	+		ABIE51_RS15615	0.30	-1.8
3,389,580	-		ABIE51_RS15615	0.41	-0.6
3,389,580	-		ABIE51_RS15615	0.41	+1.4
3,389,580	-		ABIE51_RS15615	0.41	-2.8
3,389,598	-		ABIE51_RS15615	0.43	-1.5
3,389,831	+		ABIE51_RS15615	0.69	-1.4
3,389,831	+		ABIE51_RS15615	0.69	-4.3
3,389,831	+		ABIE51_RS15615	0.69	-0.8
3,389,870	+		ABIE51_RS15615	0.73	-1.5
3,389,870	+		ABIE51_RS15615	0.73	-3.1
3,389,870	+		ABIE51_RS15615	0.73	+0.2
3,389,871	-		ABIE51_RS15615	0.73	-1.6
3,389,871	-		ABIE51_RS15615	0.73	-0.8
3,389,993	+		ABIE51_RS15615	0.87	-2.3
3,389,996	+		ABIE51_RS15615	0.88	-1.2
3,389,996	+		ABIE51_RS15615	0.88	-1.5
3,389,997	-		ABIE51_RS15615	0.88	-0.6
3,389,997	-		ABIE51_RS15615	0.88	-3.5
3,389,997	-		ABIE51_RS15615	0.88	-0.3
3,390,014	+		ABIE51_RS15615	0.90	-1.0
3,390,014	+		ABIE51_RS15615	0.90	-2.6
3,390,015	-		ABIE51_RS15615	0.90	-2.0
3,390,057	-				-2.5
3,390,096	+				-0.2
3,390,097	-				-0.8
3,390,097	-				-0.8
3,390,116	+				+0.2
3,390,116	+				+0.1
3,390,117	-				-0.2
3,390,117	-				+0.0
3,390,144	-				+1.0
3,390,144	-				+0.1
3,390,189	-				-1.3
3,390,428	+		ABIE51_RS15620	0.30	-2.3
3,390,428	+		ABIE51_RS15620	0.30	-1.7
3,390,428	+		ABIE51_RS15620	0.30	-2.5
3,390,429	-		ABIE51_RS15620	0.30	-0.2
3,390,429	-		ABIE51_RS15620	0.30	-1.7
3,390,429	-		ABIE51_RS15620	0.30	-1.3
3,390,429	-		ABIE51_RS15620	0.30	-1.0
3,390,524	+		ABIE51_RS15620	0.39	-1.7
3,390,602	+		ABIE51_RS15620	0.46	-1.5
3,390,641	+		ABIE51_RS15620	0.50	-1.7
3,390,641	+		ABIE51_RS15620	0.50	-2.0
3,390,642	-		ABIE51_RS15620	0.50	-0.5
3,390,642	-		ABIE51_RS15620	0.50	-2.4
3,390,714	-		ABIE51_RS15620	0.57	-1.8
3,390,827	+		ABIE51_RS15620	0.68	-3.3
3,391,045	-		ABIE51_RS15620	0.88	-0.0
3,391,162	-				+0.4
3,391,735	-				+0.6
3,391,735	-				-0.0
3,391,801	+				+0.8
3,391,801	+				+0.3
3,391,801	+				+0.0
3,391,802	-				+0.3
3,391,802	-				-0.5
3,391,802	-				-0.9
3,391,802	-				-0.7
3,391,802	-				+0.6
3,391,802	-				-2.0
3,391,802	-				+0.0
3,391,802	-				+0.8
3,391,802	-				+0.2
3,391,802	-				-1.7
3,391,947	+		ABIE51_RS15630	0.29	-0.5
3,391,948	-		ABIE51_RS15630	0.29	+0.4