Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS04620

Experiment: Ying_Others16 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS04615 and ABIE51_RS04620 are separated by 168 nucleotidesABIE51_RS04620 and ABIE51_RS04625 are separated by 101 nucleotidesABIE51_RS04625 and ABIE51_RS04630 overlap by 1 nucleotides ABIE51_RS04615: ABIE51_RS04615 - lipid A hydroxylase LpxO, at 1,000,362 to 1,001,267 _RS04615 ABIE51_RS04620: ABIE51_RS04620 - serine hydroxymethyltransferase, at 1,001,436 to 1,002,704 _RS04620 ABIE51_RS04625: ABIE51_RS04625 - transcriptional regulator NrdR, at 1,002,806 to 1,003,327 _RS04625 ABIE51_RS04630: ABIE51_RS04630 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 1,003,327 to 1,004,421 _RS04630 Position (kb) 1001 1002 1003Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1000.471 kb on + strand, within ABIE51_RS04615at 1000.471 kb on + strand, within ABIE51_RS04615at 1000.477 kb on + strand, within ABIE51_RS04615at 1000.478 kb on - strand, within ABIE51_RS04615at 1000.478 kb on - strand, within ABIE51_RS04615at 1000.478 kb on - strand, within ABIE51_RS04615at 1000.478 kb on - strand, within ABIE51_RS04615at 1000.663 kb on + strand, within ABIE51_RS04615at 1000.663 kb on + strand, within ABIE51_RS04615at 1000.663 kb on + strand, within ABIE51_RS04615at 1000.664 kb on - strand, within ABIE51_RS04615at 1000.664 kb on - strand, within ABIE51_RS04615at 1000.664 kb on - strand, within ABIE51_RS04615at 1000.664 kb on - strand, within ABIE51_RS04615at 1000.664 kb on - strand, within ABIE51_RS04615at 1000.664 kb on - strand, within ABIE51_RS04615at 1000.664 kb on - strand, within ABIE51_RS04615at 1000.664 kb on - strand, within ABIE51_RS04615at 1000.664 kb on - strand, within ABIE51_RS04615at 1000.664 kb on - strand, within ABIE51_RS04615at 1000.705 kb on + strand, within ABIE51_RS04615at 1000.706 kb on - strand, within ABIE51_RS04615at 1000.706 kb on - strand, within ABIE51_RS04615at 1000.706 kb on - strand, within ABIE51_RS04615at 1000.706 kb on - strand, within ABIE51_RS04615at 1000.706 kb on - strand, within ABIE51_RS04615at 1000.922 kb on - strand, within ABIE51_RS04615at 1000.922 kb on - strand, within ABIE51_RS04615at 1000.933 kb on + strand, within ABIE51_RS04615at 1000.934 kb on - strand, within ABIE51_RS04615at 1000.934 kb on - strand, within ABIE51_RS04615at 1000.934 kb on - strand, within ABIE51_RS04615at 1000.984 kb on + strand, within ABIE51_RS04615at 1000.985 kb on - strand, within ABIE51_RS04615at 1001.134 kb on + strand, within ABIE51_RS04615at 1001.134 kb on + strand, within ABIE51_RS04615at 1001.134 kb on + strand, within ABIE51_RS04615at 1001.135 kb on - strand, within ABIE51_RS04615at 1001.135 kb on - strand, within ABIE51_RS04615at 1001.150 kb on + strand, within ABIE51_RS04615at 1001.150 kb on + strand, within ABIE51_RS04615at 1001.151 kb on - strand, within ABIE51_RS04615at 1001.151 kb on - strand, within ABIE51_RS04615at 1001.151 kb on - strand, within ABIE51_RS04615at 1001.151 kb on - strand, within ABIE51_RS04615at 1001.216 kb on - strandat 1001.224 kb on + strandat 1001.224 kb on + strandat 1001.224 kb on + strandat 1001.224 kb on + strandat 1001.224 kb on + strandat 1001.225 kb on - strandat 1001.225 kb on - strandat 1001.225 kb on - strandat 1001.225 kb on - strandat 1001.466 kb on + strandat 1001.547 kb on + strandat 1001.547 kb on + strandat 1001.547 kb on + strandat 1001.547 kb on + strandat 1001.548 kb on - strandat 1001.548 kb on - strandat 1001.598 kb on + strand, within ABIE51_RS04620at 1001.598 kb on + strand, within ABIE51_RS04620at 1001.599 kb on - strand, within ABIE51_RS04620at 1001.599 kb on - strand, within ABIE51_RS04620at 1001.599 kb on - strand, within ABIE51_RS04620at 1001.625 kb on + strand, within ABIE51_RS04620at 1001.625 kb on + strand, within ABIE51_RS04620at 1001.626 kb on - strand, within ABIE51_RS04620at 1001.644 kb on + strand, within ABIE51_RS04620at 1001.644 kb on - strand, within ABIE51_RS04620at 1001.714 kb on + strand, within ABIE51_RS04620at 1001.714 kb on + strand, within ABIE51_RS04620at 1001.714 kb on + strand, within ABIE51_RS04620at 1001.714 kb on + strand, within ABIE51_RS04620at 1001.714 kb on + strand, within ABIE51_RS04620at 1001.714 kb on + strand, within ABIE51_RS04620at 1001.714 kb on + strand, within ABIE51_RS04620at 1001.714 kb on + strand, within ABIE51_RS04620at 1001.714 kb on + strand, within ABIE51_RS04620at 1001.714 kb on + strand, within ABIE51_RS04620at 1001.714 kb on + strand, within ABIE51_RS04620at 1001.714 kb on + strand, within ABIE51_RS04620at 1001.714 kb on + strand, within ABIE51_RS04620at 1001.714 kb on + strand, within ABIE51_RS04620at 1001.715 kb on - strand, within ABIE51_RS04620at 1001.715 kb on - strand, within ABIE51_RS04620at 1001.715 kb on - strand, within ABIE51_RS04620at 1001.715 kb on - strand, within ABIE51_RS04620at 1001.715 kb on - strand, within ABIE51_RS04620at 1001.715 kb on - strand, within ABIE51_RS04620at 1001.715 kb on - strand, within ABIE51_RS04620at 1001.715 kb on - strand, within ABIE51_RS04620at 1001.715 kb on - strand, within ABIE51_RS04620at 1001.715 kb on - strand, within ABIE51_RS04620at 1001.715 kb on - strand, within ABIE51_RS04620at 1001.715 kb on - strand, within ABIE51_RS04620at 1001.718 kb on + strand, within ABIE51_RS04620at 1001.718 kb on + strand, within ABIE51_RS04620at 1001.718 kb on + strand, within ABIE51_RS04620at 1001.718 kb on + strand, within ABIE51_RS04620at 1001.718 kb on + strand, within ABIE51_RS04620at 1001.718 kb on + strand, within ABIE51_RS04620at 1001.719 kb on - strand, within ABIE51_RS04620at 1001.719 kb on - strand, within ABIE51_RS04620at 1001.719 kb on - strand, within ABIE51_RS04620at 1001.719 kb on - strand, within ABIE51_RS04620at 1001.719 kb on - strand, within ABIE51_RS04620at 1001.719 kb on - strand, within ABIE51_RS04620at 1001.719 kb on - strand, within ABIE51_RS04620at 1001.766 kb on + strand, within ABIE51_RS04620at 1001.766 kb on + strand, within ABIE51_RS04620at 1001.766 kb on + strand, within ABIE51_RS04620at 1001.766 kb on + strand, within ABIE51_RS04620at 1001.767 kb on - strand, within ABIE51_RS04620at 1001.883 kb on + strand, within ABIE51_RS04620at 1001.884 kb on - strand, within ABIE51_RS04620at 1001.914 kb on - strand, within ABIE51_RS04620at 1001.979 kb on + strand, within ABIE51_RS04620at 1002.037 kb on - strand, within ABIE51_RS04620at 1002.037 kb on - strand, within ABIE51_RS04620at 1002.119 kb on + strand, within ABIE51_RS04620at 1002.120 kb on - strand, within ABIE51_RS04620at 1002.309 kb on + strand, within ABIE51_RS04620at 1002.309 kb on + strand, within ABIE51_RS04620at 1002.310 kb on - strand, within ABIE51_RS04620at 1002.369 kb on + strand, within ABIE51_RS04620at 1002.369 kb on + strand, within ABIE51_RS04620at 1002.545 kb on + strand, within ABIE51_RS04620at 1002.751 kb on + strandat 1002.805 kb on + strandat 1002.805 kb on + strandat 1002.805 kb on + strandat 1002.806 kb on - strandat 1002.806 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1
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1,000,471 + ABIE51_RS04615 0.12 +0.1
1,000,471 + ABIE51_RS04615 0.12 +0.3
1,000,477 + ABIE51_RS04615 0.13 +0.0
1,000,478 - ABIE51_RS04615 0.13 -0.0
1,000,478 - ABIE51_RS04615 0.13 -1.0
1,000,478 - ABIE51_RS04615 0.13 -0.4
1,000,478 - ABIE51_RS04615 0.13 +0.2
1,000,663 + ABIE51_RS04615 0.33 +0.3
1,000,663 + ABIE51_RS04615 0.33 +0.3
1,000,663 + ABIE51_RS04615 0.33 -0.9
1,000,664 - ABIE51_RS04615 0.33 +0.1
1,000,664 - ABIE51_RS04615 0.33 -1.3
1,000,664 - ABIE51_RS04615 0.33 -0.2
1,000,664 - ABIE51_RS04615 0.33 +0.3
1,000,664 - ABIE51_RS04615 0.33 +0.6
1,000,664 - ABIE51_RS04615 0.33 +0.1
1,000,664 - ABIE51_RS04615 0.33 -1.1
1,000,664 - ABIE51_RS04615 0.33 -1.9
1,000,664 - ABIE51_RS04615 0.33 -0.4
1,000,664 - ABIE51_RS04615 0.33 +0.0
1,000,705 + ABIE51_RS04615 0.38 +0.5
1,000,706 - ABIE51_RS04615 0.38 +0.8
1,000,706 - ABIE51_RS04615 0.38 +0.3
1,000,706 - ABIE51_RS04615 0.38 +2.0
1,000,706 - ABIE51_RS04615 0.38 +0.2
1,000,706 - ABIE51_RS04615 0.38 +1.0
1,000,922 - ABIE51_RS04615 0.62 -0.1
1,000,922 - ABIE51_RS04615 0.62 -0.1
1,000,933 + ABIE51_RS04615 0.63 -0.0
1,000,934 - ABIE51_RS04615 0.63 -0.5
1,000,934 - ABIE51_RS04615 0.63 +0.9
1,000,934 - ABIE51_RS04615 0.63 +0.6
1,000,984 + ABIE51_RS04615 0.69 -1.1
1,000,985 - ABIE51_RS04615 0.69 +0.8
1,001,134 + ABIE51_RS04615 0.85 +0.2
1,001,134 + ABIE51_RS04615 0.85 -0.1
1,001,134 + ABIE51_RS04615 0.85 -0.0
1,001,135 - ABIE51_RS04615 0.85 +0.3
1,001,135 - ABIE51_RS04615 0.85 -0.9
1,001,150 + ABIE51_RS04615 0.87 -0.0
1,001,150 + ABIE51_RS04615 0.87 +1.9
1,001,151 - ABIE51_RS04615 0.87 -0.8
1,001,151 - ABIE51_RS04615 0.87 -0.2
1,001,151 - ABIE51_RS04615 0.87 +0.4
1,001,151 - ABIE51_RS04615 0.87 -0.2
1,001,216 - -0.1
1,001,224 + -0.1
1,001,224 + -0.5
1,001,224 + +0.4
1,001,224 + +0.6
1,001,224 + -0.2
1,001,225 - -0.9
1,001,225 - -0.3
1,001,225 - +0.8
1,001,225 - -0.2
1,001,466 + -1.7
1,001,547 + -1.0
1,001,547 + +0.3
1,001,547 + -0.3
1,001,547 + +0.0
1,001,548 - -2.0
1,001,548 - -0.8
1,001,598 + ABIE51_RS04620 0.13 -2.0
1,001,598 + ABIE51_RS04620 0.13 -0.0
1,001,599 - ABIE51_RS04620 0.13 -1.3
1,001,599 - ABIE51_RS04620 0.13 -0.7
1,001,599 - ABIE51_RS04620 0.13 -1.2
1,001,625 + ABIE51_RS04620 0.15 -1.9
1,001,625 + ABIE51_RS04620 0.15 -1.5
1,001,626 - ABIE51_RS04620 0.15 +0.7
1,001,644 + ABIE51_RS04620 0.16 +0.0
1,001,644 - ABIE51_RS04620 0.16 -3.0
1,001,714 + ABIE51_RS04620 0.22 -0.3
1,001,714 + ABIE51_RS04620 0.22 -2.2
1,001,714 + ABIE51_RS04620 0.22 -1.0
1,001,714 + ABIE51_RS04620 0.22 -1.2
1,001,714 + ABIE51_RS04620 0.22 -0.4
1,001,714 + ABIE51_RS04620 0.22 -0.0
1,001,714 + ABIE51_RS04620 0.22 -0.2
1,001,714 + ABIE51_RS04620 0.22 -1.3
1,001,714 + ABIE51_RS04620 0.22 -0.2
1,001,714 + ABIE51_RS04620 0.22 -0.6
1,001,714 + ABIE51_RS04620 0.22 +0.5
1,001,714 + ABIE51_RS04620 0.22 -0.3
1,001,714 + ABIE51_RS04620 0.22 -0.1
1,001,714 + ABIE51_RS04620 0.22 -1.2
1,001,715 - ABIE51_RS04620 0.22 -3.0
1,001,715 - ABIE51_RS04620 0.22 -0.8
1,001,715 - ABIE51_RS04620 0.22 -2.1
1,001,715 - ABIE51_RS04620 0.22 -1.4
1,001,715 - ABIE51_RS04620 0.22 -0.4
1,001,715 - ABIE51_RS04620 0.22 +0.0
1,001,715 - ABIE51_RS04620 0.22 -0.3
1,001,715 - ABIE51_RS04620 0.22 -1.5
1,001,715 - ABIE51_RS04620 0.22 -0.5
1,001,715 - ABIE51_RS04620 0.22 -1.3
1,001,715 - ABIE51_RS04620 0.22 -1.2
1,001,715 - ABIE51_RS04620 0.22 -0.3
1,001,718 + ABIE51_RS04620 0.22 -1.3
1,001,718 + ABIE51_RS04620 0.22 +1.0
1,001,718 + ABIE51_RS04620 0.22 -0.4
1,001,718 + ABIE51_RS04620 0.22 +0.8
1,001,718 + ABIE51_RS04620 0.22 -1.7
1,001,718 + ABIE51_RS04620 0.22 -1.4
1,001,719 - ABIE51_RS04620 0.22 -0.3
1,001,719 - ABIE51_RS04620 0.22 -1.5
1,001,719 - ABIE51_RS04620 0.22 -1.4
1,001,719 - ABIE51_RS04620 0.22 -1.8
1,001,719 - ABIE51_RS04620 0.22 -0.1
1,001,719 - ABIE51_RS04620 0.22 -2.1
1,001,719 - ABIE51_RS04620 0.22 +1.7
1,001,766 + ABIE51_RS04620 0.26 -1.5
1,001,766 + ABIE51_RS04620 0.26 -0.2
1,001,766 + ABIE51_RS04620 0.26 -2.1
1,001,766 + ABIE51_RS04620 0.26 -1.0
1,001,767 - ABIE51_RS04620 0.26 -2.3
1,001,883 + ABIE51_RS04620 0.35 -1.7
1,001,884 - ABIE51_RS04620 0.35 -1.0
1,001,914 - ABIE51_RS04620 0.38 -0.7
1,001,979 + ABIE51_RS04620 0.43 +0.5
1,002,037 - ABIE51_RS04620 0.47 -0.0
1,002,037 - ABIE51_RS04620 0.47 -0.4
1,002,119 + ABIE51_RS04620 0.54 +0.9
1,002,120 - ABIE51_RS04620 0.54 -2.2
1,002,309 + ABIE51_RS04620 0.69 -0.5
1,002,309 + ABIE51_RS04620 0.69 -1.4
1,002,310 - ABIE51_RS04620 0.69 -1.3
1,002,369 + ABIE51_RS04620 0.74 -0.5
1,002,369 + ABIE51_RS04620 0.74 -0.2
1,002,545 + ABIE51_RS04620 0.87 +1.3
1,002,751 + +0.2
1,002,805 + +0.0
1,002,805 + -1.0
1,002,805 + +0.5
1,002,806 - -0.3
1,002,806 - +0.1

Or see this region's nucleotide sequence