Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS03310

Experiment: Ying_Others16 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS03305 and ABIE51_RS03310 are separated by 394 nucleotidesABIE51_RS03310 and ABIE51_RS03315 overlap by 25 nucleotides ABIE51_RS03305: ABIE51_RS03305 - hypothetical protein, at 731,779 to 733,056 _RS03305 ABIE51_RS03310: ABIE51_RS03310 - hypothetical protein, at 733,451 to 734,080 _RS03310 ABIE51_RS03315: ABIE51_RS03315 - DDE-type integrase/transposase/recombinase, at 734,056 to 736,029 _RS03315 Position (kb) 733 734 735Strain fitness (log2 ratio) -2 -1 0 1 2at 732.476 kb on - strand, within ABIE51_RS03305at 732.602 kb on + strand, within ABIE51_RS03305at 732.639 kb on - strand, within ABIE51_RS03305at 732.659 kb on + strand, within ABIE51_RS03305at 732.659 kb on + strand, within ABIE51_RS03305at 732.660 kb on - strand, within ABIE51_RS03305at 732.660 kb on - strand, within ABIE51_RS03305at 732.661 kb on + strand, within ABIE51_RS03305at 732.661 kb on + strand, within ABIE51_RS03305at 732.662 kb on - strand, within ABIE51_RS03305at 732.682 kb on - strand, within ABIE51_RS03305at 732.700 kb on - strand, within ABIE51_RS03305at 732.700 kb on - strand, within ABIE51_RS03305at 732.710 kb on + strand, within ABIE51_RS03305at 732.710 kb on + strand, within ABIE51_RS03305at 732.718 kb on + strand, within ABIE51_RS03305at 732.718 kb on + strand, within ABIE51_RS03305at 732.718 kb on + strand, within ABIE51_RS03305at 732.731 kb on + strand, within ABIE51_RS03305at 732.731 kb on + strand, within ABIE51_RS03305at 732.874 kb on + strand, within ABIE51_RS03305at 733.004 kb on + strandat 733.004 kb on + strandat 733.005 kb on - strandat 733.027 kb on - strandat 733.057 kb on - strandat 733.057 kb on - strandat 733.091 kb on + strandat 733.102 kb on + strandat 733.102 kb on + strandat 733.186 kb on + strandat 733.186 kb on + strandat 733.216 kb on + strandat 733.216 kb on + strandat 733.216 kb on + strandat 733.217 kb on - strandat 733.217 kb on - strandat 733.244 kb on + strandat 733.244 kb on + strandat 733.253 kb on - strandat 733.253 kb on - strandat 733.253 kb on - strandat 733.279 kb on - strandat 733.463 kb on + strandat 733.464 kb on - strandat 733.494 kb on + strandat 733.547 kb on - strand, within ABIE51_RS03310at 733.593 kb on - strand, within ABIE51_RS03310at 733.677 kb on - strand, within ABIE51_RS03310at 733.754 kb on + strand, within ABIE51_RS03310at 733.755 kb on - strand, within ABIE51_RS03310at 733.855 kb on + strand, within ABIE51_RS03310at 733.856 kb on - strand, within ABIE51_RS03310at 734.029 kb on + strandat 734.029 kb on + strandat 734.030 kb on - strandat 734.030 kb on - strandat 734.030 kb on - strandat 734.030 kb on - strandat 734.078 kb on + strandat 734.144 kb on + strandat 734.144 kb on + strandat 734.144 kb on + strandat 734.145 kb on - strandat 734.145 kb on - strandat 734.147 kb on + strandat 734.147 kb on + strandat 734.147 kb on + strandat 734.147 kb on + strandat 734.147 kb on + strandat 734.147 kb on + strandat 734.147 kb on + strandat 734.148 kb on - strandat 734.160 kb on - strandat 734.160 kb on - strandat 734.314 kb on + strand, within ABIE51_RS03315at 734.352 kb on + strand, within ABIE51_RS03315at 734.352 kb on + strand, within ABIE51_RS03315at 734.352 kb on + strand, within ABIE51_RS03315at 734.352 kb on + strand, within ABIE51_RS03315at 734.352 kb on + strand, within ABIE51_RS03315at 734.352 kb on + strand, within ABIE51_RS03315at 734.353 kb on - strand, within ABIE51_RS03315at 734.353 kb on - strand, within ABIE51_RS03315at 734.353 kb on - strand, within ABIE51_RS03315at 734.353 kb on - strand, within ABIE51_RS03315at 734.506 kb on + strand, within ABIE51_RS03315at 734.574 kb on + strand, within ABIE51_RS03315at 734.575 kb on - strand, within ABIE51_RS03315at 734.575 kb on - strand, within ABIE51_RS03315at 734.575 kb on - strand, within ABIE51_RS03315at 734.674 kb on - strand, within ABIE51_RS03315at 734.674 kb on - strand, within ABIE51_RS03315at 734.685 kb on - strand, within ABIE51_RS03315at 734.738 kb on - strand, within ABIE51_RS03315at 734.744 kb on - strand, within ABIE51_RS03315at 734.744 kb on - strand, within ABIE51_RS03315at 734.744 kb on - strand, within ABIE51_RS03315at 734.776 kb on + strand, within ABIE51_RS03315at 734.776 kb on + strand, within ABIE51_RS03315at 734.776 kb on + strand, within ABIE51_RS03315at 734.777 kb on - strand, within ABIE51_RS03315at 734.784 kb on - strand, within ABIE51_RS03315at 734.784 kb on - strand, within ABIE51_RS03315at 734.797 kb on + strand, within ABIE51_RS03315at 734.797 kb on + strand, within ABIE51_RS03315at 734.798 kb on - strand, within ABIE51_RS03315at 734.854 kb on - strand, within ABIE51_RS03315at 734.854 kb on - strand, within ABIE51_RS03315at 734.977 kb on + strand, within ABIE51_RS03315at 734.978 kb on - strand, within ABIE51_RS03315at 734.978 kb on - strand, within ABIE51_RS03315

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1
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732,476 - ABIE51_RS03305 0.55 -0.4
732,602 + ABIE51_RS03305 0.64 +0.4
732,639 - ABIE51_RS03305 0.67 -0.0
732,659 + ABIE51_RS03305 0.69 -1.3
732,659 + ABIE51_RS03305 0.69 -0.2
732,660 - ABIE51_RS03305 0.69 -0.3
732,660 - ABIE51_RS03305 0.69 +0.3
732,661 + ABIE51_RS03305 0.69 +0.3
732,661 + ABIE51_RS03305 0.69 +1.6
732,662 - ABIE51_RS03305 0.69 -1.0
732,682 - ABIE51_RS03305 0.71 -0.1
732,700 - ABIE51_RS03305 0.72 -0.3
732,700 - ABIE51_RS03305 0.72 -0.4
732,710 + ABIE51_RS03305 0.73 -0.0
732,710 + ABIE51_RS03305 0.73 -0.3
732,718 + ABIE51_RS03305 0.73 +1.3
732,718 + ABIE51_RS03305 0.73 -0.7
732,718 + ABIE51_RS03305 0.73 +0.6
732,731 + ABIE51_RS03305 0.74 -0.4
732,731 + ABIE51_RS03305 0.74 -0.5
732,874 + ABIE51_RS03305 0.86 -0.3
733,004 + +0.4
733,004 + -1.2
733,005 - +0.6
733,027 - -0.4
733,057 - -0.6
733,057 - -1.8
733,091 + -0.1
733,102 + -0.2
733,102 + -0.3
733,186 + -0.2
733,186 + +0.2
733,216 + +0.5
733,216 + -0.2
733,216 + +0.1
733,217 - +0.3
733,217 - +0.0
733,244 + +0.3
733,244 + +0.3
733,253 - -0.1
733,253 - +0.1
733,253 - +0.9
733,279 - +1.3
733,463 + -0.3
733,464 - -0.2
733,494 + +0.3
733,547 - ABIE51_RS03310 0.15 -0.3
733,593 - ABIE51_RS03310 0.23 -0.6
733,677 - ABIE51_RS03310 0.36 -0.3
733,754 + ABIE51_RS03310 0.48 -1.3
733,755 - ABIE51_RS03310 0.48 +0.1
733,855 + ABIE51_RS03310 0.64 -0.5
733,856 - ABIE51_RS03310 0.64 -0.3
734,029 + +0.9
734,029 + -0.4
734,030 - +0.6
734,030 - +0.8
734,030 - +0.0
734,030 - +0.6
734,078 + -0.6
734,144 + -0.9
734,144 + +1.0
734,144 + +0.3
734,145 - -0.1
734,145 - +0.1
734,147 + -0.4
734,147 + -0.2
734,147 + -0.0
734,147 + +0.6
734,147 + -0.1
734,147 + +0.1
734,147 + +0.1
734,148 - +0.8
734,160 - +0.1
734,160 - -0.9
734,314 + ABIE51_RS03315 0.13 -0.0
734,352 + ABIE51_RS03315 0.15 -0.2
734,352 + ABIE51_RS03315 0.15 -0.5
734,352 + ABIE51_RS03315 0.15 +0.2
734,352 + ABIE51_RS03315 0.15 +0.3
734,352 + ABIE51_RS03315 0.15 -0.1
734,352 + ABIE51_RS03315 0.15 -1.1
734,353 - ABIE51_RS03315 0.15 +0.3
734,353 - ABIE51_RS03315 0.15 -0.3
734,353 - ABIE51_RS03315 0.15 -0.1
734,353 - ABIE51_RS03315 0.15 +2.6
734,506 + ABIE51_RS03315 0.23 +1.8
734,574 + ABIE51_RS03315 0.26 +1.4
734,575 - ABIE51_RS03315 0.26 +0.6
734,575 - ABIE51_RS03315 0.26 +0.1
734,575 - ABIE51_RS03315 0.26 -2.1
734,674 - ABIE51_RS03315 0.31 -0.5
734,674 - ABIE51_RS03315 0.31 -0.1
734,685 - ABIE51_RS03315 0.32 +0.8
734,738 - ABIE51_RS03315 0.35 +0.3
734,744 - ABIE51_RS03315 0.35 -0.6
734,744 - ABIE51_RS03315 0.35 -0.9
734,744 - ABIE51_RS03315 0.35 -0.2
734,776 + ABIE51_RS03315 0.36 -0.4
734,776 + ABIE51_RS03315 0.36 -0.4
734,776 + ABIE51_RS03315 0.36 -0.2
734,777 - ABIE51_RS03315 0.37 -0.2
734,784 - ABIE51_RS03315 0.37 +0.4
734,784 - ABIE51_RS03315 0.37 +0.6
734,797 + ABIE51_RS03315 0.38 +0.0
734,797 + ABIE51_RS03315 0.38 -0.3
734,798 - ABIE51_RS03315 0.38 -0.1
734,854 - ABIE51_RS03315 0.40 +0.2
734,854 - ABIE51_RS03315 0.40 -0.6
734,977 + ABIE51_RS03315 0.47 -0.1
734,978 - ABIE51_RS03315 0.47 +0.8
734,978 - ABIE51_RS03315 0.47 -0.0

Or see this region's nucleotide sequence