Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS02740 and ABIE51_RS02745 are separated by 230 nucleotides ABIE51_RS02745 and ABIE51_RS02750 are separated by 100 nucleotides ABIE51_RS02750 and ABIE51_RS02755 are separated by 102 nucleotides
ABIE51_RS02740: ABIE51_RS02740 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 604,524 to 606,278
_RS02740
ABIE51_RS02745: ABIE51_RS02745 - hypothetical protein, at 606,509 to 606,790
_RS02745
ABIE51_RS02750: ABIE51_RS02750 - peptide-methionine (S)-S-oxide reductase MsrA, at 606,891 to 607,397
_RS02750
ABIE51_RS02755: ABIE51_RS02755 - M20/M25/M40 family metallo-hydrolase, at 607,500 to 609,044
_RS02755
Position (kb) 606
607 Strain fitness (log2 ratio) -1
0
1 at 605.533 kb on + strand, within ABIE51_RS02740 at 605.582 kb on - strand, within ABIE51_RS02740 at 605.791 kb on + strand, within ABIE51_RS02740 at 605.791 kb on + strand, within ABIE51_RS02740 at 605.791 kb on + strand, within ABIE51_RS02740 at 605.792 kb on - strand, within ABIE51_RS02740 at 605.792 kb on - strand, within ABIE51_RS02740 at 605.935 kb on + strand, within ABIE51_RS02740 at 605.935 kb on + strand, within ABIE51_RS02740 at 605.935 kb on + strand, within ABIE51_RS02740 at 605.935 kb on + strand, within ABIE51_RS02740 at 605.936 kb on - strand, within ABIE51_RS02740 at 605.936 kb on - strand, within ABIE51_RS02740 at 605.936 kb on - strand, within ABIE51_RS02740 at 606.071 kb on - strand, within ABIE51_RS02740 at 606.537 kb on + strand at 606.537 kb on + strand at 606.537 kb on + strand at 606.537 kb on + strand at 606.538 kb on - strand, within ABIE51_RS02745 at 606.538 kb on - strand, within ABIE51_RS02745 at 606.538 kb on - strand, within ABIE51_RS02745 at 606.994 kb on - strand, within ABIE51_RS02750 at 607.023 kb on + strand, within ABIE51_RS02750 at 607.023 kb on + strand, within ABIE51_RS02750 at 607.024 kb on - strand, within ABIE51_RS02750 at 607.167 kb on + strand, within ABIE51_RS02750 at 607.168 kb on - strand, within ABIE51_RS02750 at 607.185 kb on + strand, within ABIE51_RS02750 at 607.185 kb on + strand, within ABIE51_RS02750 at 607.185 kb on + strand, within ABIE51_RS02750 at 607.185 kb on + strand, within ABIE51_RS02750 at 607.186 kb on - strand, within ABIE51_RS02750 at 607.186 kb on - strand, within ABIE51_RS02750 at 607.186 kb on - strand, within ABIE51_RS02750 at 607.186 kb on - strand, within ABIE51_RS02750 at 607.187 kb on + strand, within ABIE51_RS02750 at 607.188 kb on - strand, within ABIE51_RS02750 at 607.323 kb on + strand, within ABIE51_RS02750 at 607.324 kb on - strand, within ABIE51_RS02750 at 607.324 kb on - strand, within ABIE51_RS02750 at 607.335 kb on + strand, within ABIE51_RS02750 at 607.335 kb on + strand, within ABIE51_RS02750 at 607.347 kb on + strand at 607.499 kb on + strand at 607.499 kb on + strand at 607.499 kb on + strand at 607.500 kb on - strand at 607.500 kb on - strand at 607.500 kb on - strand at 607.500 kb on - strand at 607.500 kb on - strand at 607.728 kb on + strand, within ABIE51_RS02755 at 607.728 kb on + strand, within ABIE51_RS02755 at 607.728 kb on + strand, within ABIE51_RS02755 at 607.728 kb on + strand, within ABIE51_RS02755 at 607.728 kb on + strand, within ABIE51_RS02755 at 607.728 kb on + strand, within ABIE51_RS02755 at 607.729 kb on - strand, within ABIE51_RS02755 at 607.729 kb on - strand, within ABIE51_RS02755 at 607.729 kb on - strand, within ABIE51_RS02755 at 607.729 kb on - strand, within ABIE51_RS02755 at 607.729 kb on - strand, within ABIE51_RS02755 at 607.729 kb on - strand, within ABIE51_RS02755 at 607.729 kb on - strand, within ABIE51_RS02755 at 607.729 kb on - strand, within ABIE51_RS02755 at 607.729 kb on - strand, within ABIE51_RS02755
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 605,533 + ABIE51_RS02740 0.57 -0.2 605,582 - ABIE51_RS02740 0.60 +0.4 605,791 + ABIE51_RS02740 0.72 +0.0 605,791 + ABIE51_RS02740 0.72 -0.0 605,791 + ABIE51_RS02740 0.72 -0.3 605,792 - ABIE51_RS02740 0.72 -1.2 605,792 - ABIE51_RS02740 0.72 -0.0 605,935 + ABIE51_RS02740 0.80 +0.4 605,935 + ABIE51_RS02740 0.80 -0.2 605,935 + ABIE51_RS02740 0.80 +1.3 605,935 + ABIE51_RS02740 0.80 +0.3 605,936 - ABIE51_RS02740 0.80 -0.1 605,936 - ABIE51_RS02740 0.80 +0.2 605,936 - ABIE51_RS02740 0.80 -0.1 606,071 - ABIE51_RS02740 0.88 +0.5 606,537 + +0.2 606,537 + +0.1 606,537 + +0.8 606,537 + -0.4 606,538 - ABIE51_RS02745 0.10 +0.2 606,538 - ABIE51_RS02745 0.10 -0.8 606,538 - ABIE51_RS02745 0.10 -0.9 606,994 - ABIE51_RS02750 0.20 -0.4 607,023 + ABIE51_RS02750 0.26 +0.2 607,023 + ABIE51_RS02750 0.26 +1.3 607,024 - ABIE51_RS02750 0.26 -0.0 607,167 + ABIE51_RS02750 0.54 +0.3 607,168 - ABIE51_RS02750 0.55 +0.4 607,185 + ABIE51_RS02750 0.58 +0.4 607,185 + ABIE51_RS02750 0.58 +0.4 607,185 + ABIE51_RS02750 0.58 +0.1 607,185 + ABIE51_RS02750 0.58 +0.2 607,186 - ABIE51_RS02750 0.58 +0.5 607,186 - ABIE51_RS02750 0.58 -0.8 607,186 - ABIE51_RS02750 0.58 -0.3 607,186 - ABIE51_RS02750 0.58 +0.1 607,187 + ABIE51_RS02750 0.58 -0.6 607,188 - ABIE51_RS02750 0.59 +0.5 607,323 + ABIE51_RS02750 0.85 +0.3 607,324 - ABIE51_RS02750 0.85 +0.5 607,324 - ABIE51_RS02750 0.85 +0.5 607,335 + ABIE51_RS02750 0.88 -0.2 607,335 + ABIE51_RS02750 0.88 -0.5 607,347 + +0.1 607,499 + +0.7 607,499 + -0.2 607,499 + -0.5 607,500 - +0.2 607,500 - -0.6 607,500 - +0.2 607,500 - +0.0 607,500 - -0.2 607,728 + ABIE51_RS02755 0.15 +0.6 607,728 + ABIE51_RS02755 0.15 -0.7 607,728 + ABIE51_RS02755 0.15 +0.1 607,728 + ABIE51_RS02755 0.15 -0.5 607,728 + ABIE51_RS02755 0.15 -0.8 607,728 + ABIE51_RS02755 0.15 -0.1 607,729 - ABIE51_RS02755 0.15 -0.0 607,729 - ABIE51_RS02755 0.15 +0.5 607,729 - ABIE51_RS02755 0.15 -0.1 607,729 - ABIE51_RS02755 0.15 +0.2 607,729 - ABIE51_RS02755 0.15 +1.5 607,729 - ABIE51_RS02755 0.15 +0.7 607,729 - ABIE51_RS02755 0.15 +0.8 607,729 - ABIE51_RS02755 0.15 +0.1 607,729 - ABIE51_RS02755 0.15 +0.0
Or see this region's nucleotide sequence