Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS02580 and ABIE51_RS02585 are separated by 52 nucleotides ABIE51_RS02585 and ABIE51_RS02590 are separated by 121 nucleotides
ABIE51_RS02580: ABIE51_RS02580 - MFS transporter, at 570,289 to 571,863
_RS02580
ABIE51_RS02585: ABIE51_RS02585 - SDR family oxidoreductase, at 571,916 to 572,725
_RS02585
ABIE51_RS02590: ABIE51_RS02590 - GlxA family transcriptional regulator, at 572,847 to 573,788
_RS02590
Position (kb) 571
572
573 Strain fitness (log2 ratio) -1
0
1
2
3 at 570.984 kb on - strand, within ABIE51_RS02580 at 571.192 kb on + strand, within ABIE51_RS02580 at 571.193 kb on - strand, within ABIE51_RS02580 at 571.193 kb on - strand, within ABIE51_RS02580 at 571.608 kb on - strand, within ABIE51_RS02580 at 571.677 kb on - strand, within ABIE51_RS02580 at 572.260 kb on - strand, within ABIE51_RS02585 at 572.423 kb on + strand, within ABIE51_RS02585 at 572.659 kb on - strand at 572.799 kb on + strand at 572.801 kb on + strand at 572.802 kb on - strand at 572.802 kb on - strand at 572.858 kb on - strand at 572.949 kb on + strand, within ABIE51_RS02590 at 572.949 kb on + strand, within ABIE51_RS02590 at 572.950 kb on - strand, within ABIE51_RS02590 at 572.950 kb on - strand, within ABIE51_RS02590 at 572.950 kb on - strand, within ABIE51_RS02590 at 572.950 kb on - strand, within ABIE51_RS02590 at 572.950 kb on - strand, within ABIE51_RS02590 at 573.399 kb on + strand, within ABIE51_RS02590 at 573.486 kb on + strand, within ABIE51_RS02590 at 573.487 kb on - strand, within ABIE51_RS02590 at 573.487 kb on - strand, within ABIE51_RS02590 at 573.487 kb on - strand, within ABIE51_RS02590
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 570,984 - ABIE51_RS02580 0.44 -0.0 571,192 + ABIE51_RS02580 0.57 +0.9 571,193 - ABIE51_RS02580 0.57 -0.2 571,193 - ABIE51_RS02580 0.57 -0.9 571,608 - ABIE51_RS02580 0.84 -1.3 571,677 - ABIE51_RS02580 0.88 +0.2 572,260 - ABIE51_RS02585 0.42 -0.4 572,423 + ABIE51_RS02585 0.63 -0.5 572,659 - +0.5 572,799 + +3.2 572,801 + -0.4 572,802 - +1.1 572,802 - +0.2 572,858 - -0.0 572,949 + ABIE51_RS02590 0.11 -0.1 572,949 + ABIE51_RS02590 0.11 +0.4 572,950 - ABIE51_RS02590 0.11 -0.2 572,950 - ABIE51_RS02590 0.11 +0.1 572,950 - ABIE51_RS02590 0.11 +0.1 572,950 - ABIE51_RS02590 0.11 -1.3 572,950 - ABIE51_RS02590 0.11 +0.1 573,399 + ABIE51_RS02590 0.59 -0.8 573,486 + ABIE51_RS02590 0.68 -0.2 573,487 - ABIE51_RS02590 0.68 -0.9 573,487 - ABIE51_RS02590 0.68 +0.8 573,487 - ABIE51_RS02590 0.68 +0.4
Or see this region's nucleotide sequence