Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS01030 and ABIE51_RS01035 overlap by 46 nucleotides ABIE51_RS01035 and ABIE51_RS01040 are separated by 199 nucleotides
ABIE51_RS01030: ABIE51_RS01030 - exodeoxyribonuclease V subunit alpha, at 219,031 to 220,848
_RS01030
ABIE51_RS01035: ABIE51_RS01035 - phytochelatin synthase family protein, at 220,803 to 221,639
_RS01035
ABIE51_RS01040: ABIE51_RS01040 - LysR family transcriptional regulator, at 221,839 to 222,924
_RS01040
Position (kb) 220
221
222 Strain fitness (log2 ratio) -2
-1
0
1
2 at 219.848 kb on - strand, within ABIE51_RS01030 at 220.453 kb on + strand, within ABIE51_RS01030 at 220.453 kb on + strand, within ABIE51_RS01030 at 220.453 kb on + strand, within ABIE51_RS01030 at 220.493 kb on - strand, within ABIE51_RS01030 at 220.727 kb on - strand at 220.727 kb on - strand at 220.728 kb on + strand at 220.729 kb on - strand at 220.854 kb on - strand at 220.854 kb on - strand at 221.026 kb on + strand, within ABIE51_RS01035 at 221.026 kb on + strand, within ABIE51_RS01035 at 221.135 kb on - strand, within ABIE51_RS01035 at 221.135 kb on - strand, within ABIE51_RS01035 at 221.560 kb on + strand at 221.560 kb on + strand at 221.561 kb on - strand at 221.561 kb on - strand at 221.703 kb on - strand at 221.703 kb on - strand at 221.703 kb on - strand at 221.722 kb on - strand at 221.988 kb on - strand, within ABIE51_RS01040 at 222.024 kb on - strand, within ABIE51_RS01040 at 222.024 kb on - strand, within ABIE51_RS01040 at 222.122 kb on + strand, within ABIE51_RS01040 at 222.161 kb on + strand, within ABIE51_RS01040 at 222.161 kb on + strand, within ABIE51_RS01040 at 222.161 kb on + strand, within ABIE51_RS01040 at 222.161 kb on + strand, within ABIE51_RS01040 at 222.162 kb on - strand, within ABIE51_RS01040 at 222.162 kb on - strand, within ABIE51_RS01040 at 222.162 kb on - strand, within ABIE51_RS01040 at 222.162 kb on - strand, within ABIE51_RS01040 at 222.162 kb on - strand, within ABIE51_RS01040 at 222.176 kb on + strand, within ABIE51_RS01040 at 222.177 kb on - strand, within ABIE51_RS01040 at 222.177 kb on - strand, within ABIE51_RS01040 at 222.320 kb on + strand, within ABIE51_RS01040 at 222.320 kb on + strand, within ABIE51_RS01040 at 222.320 kb on + strand, within ABIE51_RS01040 at 222.321 kb on - strand, within ABIE51_RS01040 at 222.411 kb on - strand, within ABIE51_RS01040 at 222.425 kb on + strand, within ABIE51_RS01040 at 222.426 kb on - strand, within ABIE51_RS01040 at 222.623 kb on + strand, within ABIE51_RS01040 at 222.623 kb on + strand, within ABIE51_RS01040
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 219,848 - ABIE51_RS01030 0.45 +0.3 220,453 + ABIE51_RS01030 0.78 -1.9 220,453 + ABIE51_RS01030 0.78 +0.3 220,453 + ABIE51_RS01030 0.78 -0.0 220,493 - ABIE51_RS01030 0.80 +0.7 220,727 - -1.0 220,727 - +0.0 220,728 + -0.1 220,729 - -0.0 220,854 - -0.6 220,854 - -0.6 221,026 + ABIE51_RS01035 0.27 -0.7 221,026 + ABIE51_RS01035 0.27 +0.1 221,135 - ABIE51_RS01035 0.40 -0.6 221,135 - ABIE51_RS01035 0.40 -0.5 221,560 + +0.1 221,560 + -1.5 221,561 - +0.1 221,561 - -1.1 221,703 - +0.7 221,703 - -0.9 221,703 - -0.5 221,722 - -0.5 221,988 - ABIE51_RS01040 0.14 -0.1 222,024 - ABIE51_RS01040 0.17 +1.4 222,024 - ABIE51_RS01040 0.17 -0.0 222,122 + ABIE51_RS01040 0.26 +0.3 222,161 + ABIE51_RS01040 0.30 +0.1 222,161 + ABIE51_RS01040 0.30 -0.6 222,161 + ABIE51_RS01040 0.30 +0.2 222,161 + ABIE51_RS01040 0.30 +1.8 222,162 - ABIE51_RS01040 0.30 +1.2 222,162 - ABIE51_RS01040 0.30 -0.5 222,162 - ABIE51_RS01040 0.30 -1.7 222,162 - ABIE51_RS01040 0.30 +0.2 222,162 - ABIE51_RS01040 0.30 -0.2 222,176 + ABIE51_RS01040 0.31 -1.0 222,177 - ABIE51_RS01040 0.31 +0.4 222,177 - ABIE51_RS01040 0.31 -0.4 222,320 + ABIE51_RS01040 0.44 -0.0 222,320 + ABIE51_RS01040 0.44 +0.4 222,320 + ABIE51_RS01040 0.44 -1.8 222,321 - ABIE51_RS01040 0.44 +0.4 222,411 - ABIE51_RS01040 0.53 +0.1 222,425 + ABIE51_RS01040 0.54 -0.5 222,426 - ABIE51_RS01040 0.54 -0.4 222,623 + ABIE51_RS01040 0.72 -0.4 222,623 + ABIE51_RS01040 0.72 -0.2
Or see this region's nucleotide sequence