Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS08060

Experiment: Ying_Others16 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS08050 and ABIE51_RS08055 overlap by 4 nucleotidesABIE51_RS08055 and ABIE51_RS08060 are separated by 87 nucleotidesABIE51_RS08060 and ABIE51_RS08065 are separated by 144 nucleotides ABIE51_RS08050: ABIE51_RS08050 - NAD(P)H-hydrate dehydratase, at 1,711,984 to 1,713,486 _RS08050 ABIE51_RS08055: ABIE51_RS08055 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 1,713,483 to 1,713,956 _RS08055 ABIE51_RS08060: ABIE51_RS08060 - N-acetylmuramoyl-L-alanine amidase, at 1,714,044 to 1,715,723 _RS08060 ABIE51_RS08065: ABIE51_RS08065 - DNA mismatch repair endonuclease MutL, at 1,715,868 to 1,717,706 _RS08065 Position (kb) 1714 1715 1716Strain fitness (log2 ratio) -2 -1 0 1 2at 1713.185 kb on - strand, within ABIE51_RS08050at 1713.185 kb on - strand, within ABIE51_RS08050at 1714.036 kb on + strandat 1715.662 kb on - strandat 1715.662 kb on - strandat 1715.686 kb on - strandat 1716.197 kb on + strand, within ABIE51_RS08065at 1716.197 kb on + strand, within ABIE51_RS08065at 1716.198 kb on - strand, within ABIE51_RS08065at 1716.536 kb on - strand, within ABIE51_RS08065at 1716.621 kb on + strand, within ABIE51_RS08065at 1716.621 kb on + strand, within ABIE51_RS08065at 1716.621 kb on + strand, within ABIE51_RS08065at 1716.622 kb on - strand, within ABIE51_RS08065at 1716.622 kb on - strand, within ABIE51_RS08065at 1716.622 kb on - strand, within ABIE51_RS08065at 1716.622 kb on - strand, within ABIE51_RS08065at 1716.622 kb on - strand, within ABIE51_RS08065at 1716.627 kb on + strand, within ABIE51_RS08065at 1716.627 kb on + strand, within ABIE51_RS08065at 1716.627 kb on + strand, within ABIE51_RS08065at 1716.627 kb on + strand, within ABIE51_RS08065at 1716.627 kb on + strand, within ABIE51_RS08065at 1716.628 kb on + strand, within ABIE51_RS08065at 1716.628 kb on - strand, within ABIE51_RS08065at 1716.628 kb on - strand, within ABIE51_RS08065at 1716.628 kb on - strand, within ABIE51_RS08065at 1716.628 kb on - strand, within ABIE51_RS08065at 1716.684 kb on + strand, within ABIE51_RS08065at 1716.684 kb on + strand, within ABIE51_RS08065at 1716.685 kb on - strand, within ABIE51_RS08065at 1716.685 kb on - strand, within ABIE51_RS08065at 1716.685 kb on - strand, within ABIE51_RS08065at 1716.720 kb on + strand, within ABIE51_RS08065at 1716.720 kb on + strand, within ABIE51_RS08065at 1716.720 kb on + strand, within ABIE51_RS08065at 1716.720 kb on + strand, within ABIE51_RS08065

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1
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1,713,185 - ABIE51_RS08050 0.80 +0.5
1,713,185 - ABIE51_RS08050 0.80 +0.7
1,714,036 + -1.2
1,715,662 - -1.0
1,715,662 - -0.9
1,715,686 - +0.4
1,716,197 + ABIE51_RS08065 0.18 -0.3
1,716,197 + ABIE51_RS08065 0.18 +0.1
1,716,198 - ABIE51_RS08065 0.18 +0.4
1,716,536 - ABIE51_RS08065 0.36 -2.1
1,716,621 + ABIE51_RS08065 0.41 +0.0
1,716,621 + ABIE51_RS08065 0.41 -0.1
1,716,621 + ABIE51_RS08065 0.41 +0.3
1,716,622 - ABIE51_RS08065 0.41 +0.4
1,716,622 - ABIE51_RS08065 0.41 -0.5
1,716,622 - ABIE51_RS08065 0.41 -0.2
1,716,622 - ABIE51_RS08065 0.41 -1.2
1,716,622 - ABIE51_RS08065 0.41 +0.8
1,716,627 + ABIE51_RS08065 0.41 +0.1
1,716,627 + ABIE51_RS08065 0.41 -0.1
1,716,627 + ABIE51_RS08065 0.41 -0.6
1,716,627 + ABIE51_RS08065 0.41 -1.3
1,716,627 + ABIE51_RS08065 0.41 +0.2
1,716,628 + ABIE51_RS08065 0.41 +0.3
1,716,628 - ABIE51_RS08065 0.41 +2.2
1,716,628 - ABIE51_RS08065 0.41 +0.7
1,716,628 - ABIE51_RS08065 0.41 -0.7
1,716,628 - ABIE51_RS08065 0.41 +0.2
1,716,684 + ABIE51_RS08065 0.44 +0.6
1,716,684 + ABIE51_RS08065 0.44 -0.8
1,716,685 - ABIE51_RS08065 0.44 -0.1
1,716,685 - ABIE51_RS08065 0.44 -0.4
1,716,685 - ABIE51_RS08065 0.44 -0.4
1,716,720 + ABIE51_RS08065 0.46 +0.5
1,716,720 + ABIE51_RS08065 0.46 -0.0
1,716,720 + ABIE51_RS08065 0.46 +0.3
1,716,720 + ABIE51_RS08065 0.46 -0.5

Or see this region's nucleotide sequence